BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480476
Length=737
Score E
Sequences producing significant alignments: (Bits) Value
AT2G19970.1 | Symbols: | CAP (Cysteine-rich secretory proteins... 1083 0.0
> AT2G19970.1 | Symbols: | CAP (Cysteine-rich secretory proteins,
Antigen 5, and Pathogenesis-related 1 protein) superfamily
protein | chr2:8623730-8624476 REVERSE LENGTH=747
Length=747
Score = 1083 bits (586), Expect = 0.0
Identities = 693/743 (93%), Gaps = 14/743 (2%)
Strand=Plus/Plus
Query 1 TCCaaaaaaaTTCACAAAAACATAACAAAATGTTGC-CTTTTCGTTATAGC-TTCGTCGT 58
||||||| | || |||||| || ||||||||| | | |||||||||||| | |||||| |
Sbjct 2 TCCAAAACATTTTACAAAACCACAACAAAATG-TCCTCTTTTCGTTATA-CTTTCGTCCT 59
Query 59 TCTGACATTACTCTCTGTTTTGTTAACTCTAGCCTATGGTCTACCTAGGGTAAGACCAAT 118
|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 60 ACTGACATTACTCTCTGTTTTGTTAACTCGAGCGTATGGTCTACCTAGGGTAAGACCAAT 119
Query 119 CAAAGATGTCCAACCGaaaaaaaCGCTAAAGGTTCACAACCAGATCCGAGCCGCGGTCGG 178
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CAAAGATGTCCAACCGAGAAAAACGCTAAAGGTTCACAACCAGATCCGAGCCGCGGTCGG 179
Query 179 GGTGGCTCCATTGAAGTGGAACAGAACAGTAGCGGCCTATGCACAGAAGTTCGCAAATAG 238
|||||||||| |||||||||||| ||| |||||||||||||||||||| || ||||||||
Sbjct 180 GGTGGCTCCACTGAAGTGGAACAAAACCGTAGCGGCCTATGCACAGAAATTTGCAAATAG 239
Query 239 ACAAGCCAAAGCCGGAGTCTGCGACTACAGCTCCATGAGACATTCTGATGGACCTTACGG 298
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 ACAAGCTAAAGCCGGAGTCTGCGACTACAGCTCCATGAGACATTCTGATGGACCTTACGG 299
Query 299 CGAGAATATCGCTGCGGGATGGGTCCAACCTGAAG-ACCAAATGAGCGGTCCGATCGCGG 357
|||||||||||| |||||||||||||||||| ||| ||||||||||||||||||| ||||
Sbjct 300 CGAGAATATCGCCGCGGGATGGGTCCAACCT-AAGGACCAAATGAGCGGTCCGATAGCGG 358
Query 358 CAAAGTATTGGTTGACGGAGAAGCCAAACTACGATTATGCGACCAACAAGTGCAAAGATG 417
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 359 CAAAGTATTGGTTGACGGAGAAGCCAAACTACGATCATGCGACCAACAAATGCAAAGATG 418
Query 418 TTTGCGGACACTACACTCAGATGGTGGCCAATCAGTCGTTCAGTCTCGGATGTGGCTCGT 477
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 419 TTTGCGGACACTACACTCAGATGGTGGCCAATCAATCGTTAAGTCTCGGATGTGGCTCGT 478
Query 478 TCAGGTGTCATGAGAATGAGTTAATTTATATTGTATGTAACTATTATCCTATGCCAGTGG 537
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 479 TCAGGTGTCATGAGAATGAGTTGATTTATATTGTATGTAACTATTATCCTATGCCAGTGG 538
Query 538 GTGATGAGAATACACGTCCTTATTGATTATGTTGATGTGAAGAAATGATCCATATGGTAA 597
||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 539 GTGATGAGAATACCCGTCCTTATTGATTATATTGATGCAAAGAAATGATCCATATGGTAA 598
Query 598 TGTGATTTGACAATAATTAATATGTTAAGTTACTGATCCAT-TATATGTATAAGACTATA 656
|||||||||||||| ||||||||||||||||||||||| || ||||||||||||| ||||
Sbjct 599 TGTGATTTGACAATTATTAATATGTTAAGTTACTGATCAATATATATGTATAAGAATATA 658
Query 657 AAACCAAGTTTATGATCTA--TTGGTTTGTATTATTAGTGTTGTTGCTGTGAAATCATTC 714
|||||||||||||||| || ||||||||||| | ||| | | ||||||||||| ||||
Sbjct 659 AAACCAAGTTTATGATATACATTGGTTTGTAT-A--AGT-T-GCTGCTGTGAAATGATTC 713
Query 715 AGAATAATATGTGATGGTCAATT 737
||||||| |||||||| ||||||
Sbjct 714 AGAATAAAATGTGATGTTCAATT 736
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35766712664
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5