BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480484
Length=2076
Score E
Sequences producing significant alignments: (Bits) Value
AT2G19870.1 | Symbols: | tRNA/rRNA methyltransferase (SpoU) fa... 3140 0.0
> AT2G19870.1 | Symbols: | tRNA/rRNA methyltransferase (SpoU)
family protein | chr2:8575878-8577947 FORWARD LENGTH=2070
Length=2070
Score = 3140 bits (1700), Expect = 0.0
Identities = 1957/2081 (94%), Gaps = 18/2081 (1%)
Strand=Plus/Plus
Query 1 CTGGTCTCTCTCTTAAACCCTaaaaaaaaaaTCTCTGGTAGTCAGATTGGTCTATCAATG 60
||||||| || |||||||||| | |||||||||||||||| |||||||||| ||||
Sbjct 1 CTGGTCTTTCCCTTAAACCCT-----AGAAATCTCTGGTAGTCA-ATTGGTCTATGAATG 54
Query 61 GGAGAATCTTCAAATACCATTTTCTAATAGCTCTTCGTTT-ATAAAATTCACCTTTCTCC 119
||||||||||||| ||| || || ||| || |||||||| | ||||||||||| || ||
Sbjct 55 GGAGAATCTTCAACCACCGTTATCCAATTGCGCTTCGTTTGA-AAAATTCACCTATCCCC 113
Query 120 ACCGGAAAAAGTTGGATTTTTCTCTCTTCTGTTTACTCCGAAATCATGTACTGTAATTTA 179
|||||| || |||||| |||||||||||||||||| ||||||||||||||| |||
Sbjct 114 ACCGGATTTTTTTTTATTTTT-TCTCTTCTGTTTACTCCG-AATCATGTACTGTAACTTA 171
Query 180 ACAAGAAGCCAAGGATTTCCAATGGCGATTAGGGTTTCATTACAACAAACAACAATCCAA 239
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 172 ACAAGAAGCCAAGGCTTTCCAATGGCGATTAGGGTTTCATTACAACAAACAACAATCAAA 231
Query 240 AGCTGTTTCCAATTCTCAAAGTCTTTGTATTTACCAGTTAAGTTTCATTTAAACCCTAAA 299
|| ||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 232 AGTTGTCTCCAGTTCTCAAAGTCTTCGTATTTACCAGTTAAGTTTCATTTAAACCCTAAA 291
Query 300 GGAAG-AGCCTTTGCAAATGTTTCCACTGGTTTAGTTAGTTCTCGTCTTAATTCTATGAA 358
||||| | |||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 292 GGAAGCA-CCTTTGCACATGTTTCGACTGGTTTAGTTAGTTCTCGTCTTAATTCTATGAA 350
Query 359 GATTGGAATGTTGAGGAAACCTGTAA-GTGTTAGAGAGTTTTCGAGTTTTGATTCTCAGA 417
|||| ||||||||||||| |||| || |||||||||||||||||||||||||||| ||||
Sbjct 351 GATTAGAATGTTGAGGAACCCTG-AAGGTGTTAGAGAGTTTTCGAGTTTTGATTCGCAGA 409
Query 418 GATTTGGCAAACGAAGTAGTAATAGTAGTAGTAGAGGGAAGTCAGGATTAGGATCAAAAG 477
||||||| ||||||||||||| || |||||||||||||||||||||||||||||| ||||
Sbjct 410 GATTTGGGAAACGAAGTAGTAGTAATAGTAGTAGAGGGAAGTCAGGATTAGGATCGAAAG 469
Query 478 CTTTCCGAGAGAAGAGAAGTGGTGGTAATGGCCGTTCTAGTGGAGATTCGATTTGGGTGA 537
||| |||||| ||||||||||| |||| ||||||||||||||||||||| ||||||||||
Sbjct 470 CTTACCGAGATAAGAGAAGTGGCGGTAGTGGCCGTTCTAGTGGAGATTCAATTTGGGTGA 529
Query 538 AGTCTGATGAGAAACCAGTGGAAGAAAGGTTTCAGAGAGGTGATAGGCCTTCTTGGGAGA 597
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 530 AGTCTGATGAGAAACCAGTGGAAGAAAGGTTTCAGAGAGGTGATAGACCTTCTTGGGAGA 589
Query 598 AACGAGATGGTAGAAGTGATTC-GGTTTCTGATAGGAGAAGTAGATTCAGAGGTTATGGT 656
||||||||||||||| |||||| || |||||||||||||||||||| |||||||||||||
Sbjct 590 AACGAGATGGTAGAAATGATTCAGG-TTCTGATAGGAGAAGTAGATCCAGAGGTTATGGT 648
Query 657 GAAACGAGGAATCGAGATTCTTTTCGTGATCGAAGAGATGATAGAATCAGTGAAGTGGAA 716
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 649 GAGACGAGGAATCGAGATTCTTTTCGTGGTCGAAGAGATGATAGAATCAGTGAAGTGGAA 708
Query 717 GAACAAAGTAAGAAAGGTAGTGGGAATTCAATTTGGGTGGCTAATGATGATAAACCGGCG 776
||| | |||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 709 GAAGAGAGTAAGAAAGGTGGAGGGAATTCAATTTGGGTGGCTAATGATGATAAACCGGCG 768
Query 777 AAAGAGCAATTGCCGAGAGTTAACAACAGGTCATCTTGGGATGATAGAACAAGAAATCAG 836
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 769 AAAGAGCAATCGCCGAGAGTTAACAACCGGTCATCTTGGGATGATAGAACAAGAAATCAG 828
Query 837 AACTCTTTTAGTGCCCGAGGTGATGATAGAATCGCTGAAGAAGTAGAAGACGAAACTGA- 895
||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||| |
Sbjct 829 AACTCTTTTAGTGCCCGAGGTGATGATAGAATCACTGAAGAAGCAGAAGAGGAAAC-AAT 887
Query 896 GAATCATGGCCGTGATGACGGTGATGGAATCATTGAAGAAGAACCAGATAATACTAGGTG 955
|||||||| || ||| || |||||||||||| ||||||||||||||||||||||||||||
Sbjct 888 GAATCATGCCCCTGAAGATGGTGATGGAATCGTTGAAGAAGAACCAGATAATACTAGGTG 947
Query 956 GTCTGAGATCAAAAATAGGTTCAATAGGTATGATGTAAGAGATCAAGGACGCGATAATGC 1015
|||||||||||||||||| ||||||||||||||||||||||||||||| || || ||||
Sbjct 948 GTCTGAGATCAAAAATAGATTCAATAGGTATGATGTAAGAGATCAAGGGCGTGACGATGC 1007
Query 1016 AGCATATCGAAACTGGAATAGGCAAGAGAGCTGGGGTAGGAAAACATGGCAAGAGGCGAC 1075
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 AGCTTATCGAAACTGGAATAGGCAAGAGAGCTGGGGTAGGAAAACATGGCAAGAGGCGAC 1067
Query 1076 TGAGTCCAGCGTACCTAGGCTGGAGGGTGAAGTGGTCTATGGAGTAAGTCCAGTGTTAGC 1135
||||||||| || ||||||||||| ||||||||||| |||||||||||||||||||| ||
Sbjct 1068 TGAGTCCAGTGTGCCTAGGCTGGAAGGTGAAGTGGTTTATGGAGTAAGTCCAGTGTTGGC 1127
Query 1136 TGCACTCTCTGTTGGGAGACGAGAGTTCTATGCTCTCTATGTTCAAGAAGGTTTAGACTT 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1128 TGCACTCTCTGTTGGGAGACGAGAGTTCTATGCTCTCTATGTTCAAGAAGGTTTAGATTT 1187
Query 1196 GAGCAGTAACAATAGGAAGAAGAAAGACAAGAAAGGGTTCGAGAAAGTCTTGAAAATCTC 1255
|||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||
Sbjct 1188 GAGCAGTAACAATAGGAAGAAGAAAGACAAGAAAGGCTTCGAGAGAGTTTTGAAAATCTC 1247
Query 1256 CGAAAAGCTCGGGTTAAACCTCAAGGAAACTTCGAAGCATGATCTTAACATGGTCGCTGA 1315
||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1248 TGAAAAACTTGGGTTAAACATCAAGGAAACTTCGAAGCATGATCTTAACATGGTCGCTGA 1307
Query 1316 TAACAGACCACATCAAGGATTGGTGCTTGATGCTTCTCCATTAGAATTGGTGAAAGTGAA 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1308 TAACAGACCACATCAAGGATTGGTGCTTGATGCTTCTCCATTAGAATTGGTGAAAGTGAA 1367
Query 1376 AGAACTAGATCCGATTTCATCAGAGGAAGAGAAATATTCTCTTTGGGTAGCTCTTGATGA 1435
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1368 AGAACTAGATCCGATTTCATCAGAGGAAGAGAAATATTCTCTCTGGGTAGCTCTTGATGA 1427
Query 1436 GGTCACTGATCCGCAGAACTTAGGCGCGATCATAAGATCTGCTTACTTTTTTGGAGCAAC 1495
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1428 GGTCACTGATCCACAGAACTTAGGCGCGATCATAAGATCTGCTTACTTTTTTGGAGCCAC 1487
Query 1496 GGGTGTTGTGGTATGCGCGAAAAACTCAGCTCCATTAAGTGCGGTTGTGAGTAAAGCAAG 1555
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1488 GGGTGTTGTGGTATGCGCTAAAAACTCAGCTCCATTAAGTGCAGTTGTGAGTAAAGCAAG 1547
Query 1556 TGCTGGATCACTCGAAGTTATGGAACTCAGGTACTGCAAAAACATGATGCAGTTTTTAGA 1615
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1548 CGCTGGATCACTCGAAGTAATGGAACTCAGGTACTGCAAAAACATGATGCAGTTTTTGGA 1607
Query 1616 AGCTTCTGCTGAGAACGGTTGGCGTGTAGTTGGTGGTTCGGTATCTCCAAAGGCTGTTGC 1675
|||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1608 AGCTTCTGCTGAGAACGGCTGGCGTGTGGTTGGTGGTTCGGTATCACCAAAGGCTGTTGC 1667
Query 1676 TTTGAACGAGGTTTTACCCGGCAGCCCGACAATACTTGTCTTGGGGAATGAAGGAACGGG 1735
|||||||||||||||||| |||||||| ||||| ||||||||||| ||||||||||||||
Sbjct 1668 TTTGAACGAGGTTTTACCTGGCAGCCCAACAATTCTTGTCTTGGGTAATGAAGGAACGGG 1727
Query 1736 TTTAAGGCCATTAGTAGAGCGATCATGTACCGAATTAGTCAGGATTAGTGGTAATATGCC 1795
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1728 TTTAAGGCCATTAGTAGAGCGATCATGTACCGATTTAGTGAGGATTAGTGGTAATATGCC 1787
Query 1796 CAATGATGTTGCAGTTACAGAGTCTGATGATGCGGAAGGTGAAGGTTTCAGATCATTTCT 1855
||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1788 CAACGAAGTTGCAGTAACAGAGTCTGATGATGCGGAAGGTGAAGGTTTCAGATCATTTCT 1847
Query 1856 TGCTGTGGAGAGCTTGAACGTGAGTGTTGCAGCTGGTTTGTTTCTTCATCACTTAATAGG 1915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1848 TGCTGTGGAGAGCTTGAACGTGAGTGTTGCAGCTGGTTTGTTTCTTCATCACTTAATAGG 1907
Query 1916 CAACAAAGCAAGTGCTTGATTCCTCCTTGCGTTCTTCGTATCAATTACATTTTTGCACCA 1975
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||
Sbjct 1908 CAACAAAGCAAGTGCTTGATTCCTCCTTGAGTTCTTCTTATCAATTACATTTTTGAACCA 1967
Query 1976 AACTTGGGATTTGCTCTCTACTTGTATAACTTTATGCTCTCATTCTATGGTTTGTTTTCC 2035
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1968 AACTTGGGATTTGCTCTTTACTTGTATAACTTTATGCTCTCATTCTATGGTTTGTTTTCC 2027
Query 2036 TATCATGACCTGATCTATCTATGCTCGAAAAGCCGCATTAT 2076
|| |||||||||||||||||||||||||||||| |||||||
Sbjct 2028 TAACATGACCTGATCTATCTATGCTCGAAAAGCTGCATTAT 2068
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102911117250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5