BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480488
Length=1442
Score E
Sequences producing significant alignments: (Bits) Value
AT2G19810.1 | Symbols: | CCCH-type zinc finger family protein ... 1666 0.0
AT4G29190.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type fam... 654 0.0
> AT2G19810.1 | Symbols: | CCCH-type zinc finger family protein
| chr2:8550313-8551858 FORWARD LENGTH=1546
Length=1546
Score = 1666 bits (902), Expect = 0.0
Identities = 1043/1110 (94%), Gaps = 14/1110 (1%)
Strand=Plus/Plus
Query 67 TaaaaaaaTGATGATCGGAGAATCTCATCGTGGTTTTAATCCTACGGTTCATATTCCAT- 125
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 100 TAAAAAAATGATGATCGGAGAATCTCATCGTGGTTTTAATCCAACGGTTCATATTCC-TC 158
Query 126 CATGGCCACTGTCTGAAGATTTAACGGCGTCAGATGTTTACGGAAGTCCAGACGGAGGAA 185
|||||||||| ||||||||| |||||| ||| ||| ||||||||||||||||||||||||
Sbjct 159 CATGGCCACTTTCTGAAGATCTAACGGTGTCTGATATTTACGGAAGTCCAGACGGAGGAA 218
Query 186 GTAGTATGATGGAAGCTTTGGCTGCGTTACAACGTTATCTTCCGTCTAACGAACCGGATC 245
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 219 GTAGTATGATGGAAGCTTTGGCTGAGTTACAACGTTATCTTCCGTCAAACGAACCGGATC 278
Query 246 CGGATTCTGATCCGGATCTCTCGGGTCCGGATTCACCCATCGATGCTTATTCGTGTGATC 305
||||||| ||||||||||||||||||||||||||||| |||||||||||| | || ||||
Sbjct 279 CGGATTCAGATCCGGATCTCTCGGGTCCGGATTCACCAATCGATGCTTATACATGCGATC 338
Query 306 ATTTTCGGATGTATGAGTTTAAAGTGAGACGTTGCGCTCGTGGTCGGAGTCATGATTGGA 365
|||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct 339 ATTTTCGGATGTATGAGTTTAAAGTGAGACGTTGTGCTCGTGGCCGGAGCCATGATTGGA 398
Query 366 CGGAGTGTCCTTATGCTCATCCCGGAGAAAAAGCTCGCCGTCGTGATCCGAGGAAGTTTC 425
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 399 CGGAGTGTCCTTACGCTCATCCCGGAGAAAAAGCTCGCCGTCGTGATCCGAGGAAGTTTC 458
Query 426 ATTATTCCGGTACGGCGTGTCCTGAGTTTCGTAAAGGTGGTTGCAAGAGAGGAGACGCGT 485
|||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 459 ATTACTCCGGTACGGCGTGTCCTGAGTTTCGTAAAGGTTGTTGCAAGAGAGGAGACGCAT 518
Query 486 GTGAGTTTTCTCATGGTGTTTTTGAGTGTTGGCTTCATCCGGCGCGTTACCGGACTCAGC 545
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 519 GTGAGTTTTCTCATGGTGTTTTTGAGTGTTGGCTTCACCCGGCGCGTTACCGGACTCAGC 578
Query 546 CGTGTAAAGACGGTGGTAACTGTCGCCGTCGTGTTTGTTTCTTCGCTCATTCGCCGGATC 605
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 579 CGTGTAAAGACGGTGGTAACTGTCGCCGTCGTGTTTGTTTCTTTGCTCATTCGCCGGATC 638
Query 606 AGCTTAGGGTTTTGCCTAGTCAAAGCCCTGATCGTGTTGATTCATTCGACGGTTTGTCTC 665
|| ||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||
Sbjct 639 AGATTAGGGTTTTGCCTAATCAAAGCCCTGATCGTGTTGATTCGTTCGACGTTTTGTCTC 698
Query 666 C---GATTCGTAGAGCGTTTCAGTTTACGATTTCGCCGTCGTCTAACTCCCCGCCGGTGA 722
| |||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||
Sbjct 699 CTACGATTCGTAGAGCGTTTCAGTTTTCGATTTCTCCGTCGTCTAACTCGCCGCCGGTGA 758
Query 723 GTCCTCGAGGTGACTCGGACTCGTCGCCGTCTC-T-ACTGAGTCGTTCACTCGGATCTAA 780
|||| ||||||||||||||||||||| || || | |||||||||||||||||| |||||
Sbjct 759 GTCCACGAGGTGACTCGGACTCGTCGT-GT-TCGTTACTGAGTCGTTCACTCGGGTCTAA 816
Query 781 TTTGGGAAACGACGTCGTTGCGTCCCTGAGGAATCTGCAGCTTAGTAAAGTGAAGTCT-C 839
| |||||||||||||||||||||| || ||||||||||| |||| ||||||||||||| |
Sbjct 817 TCTGGGAAACGACGTCGTTGCGTCTCTCAGGAATCTGCAACTTAATAAAGTGAAGTCTTC 876
Query 840 T-TT-CTTCGTCGTACAACAATGAAATCGGAGGATACGGATCTGGGTTCGGGTCGCCTCG 897
| || | ||||| ||||||||| ||||||||||||||||||| || ||||||||||||||
Sbjct 877 TCTTTCGTCGTCATACAACAATCAAATCGGAGGATACGGATCCGGATTCGGGTCGCCTCG 936
Query 898 TGGATCGGTTTTGGGTCCTGGTTTTCGGAGCTTACCAACAACACCGACCCGACCCGGGTT 957
|||||||||||||||||||||||| || ||||||||||| |||||||||||||| || ||
Sbjct 937 TGGATCGGTTTTGGGTCCTGGTTTCCGTAGCTTACCAACTACACCGACCCGACCTGGTTT 996
Query 958 TATGAACATTTGGGAAAATGGTTTGGAGGAAGAACCGGCGATGGAACGGGTCGAGTCGGG 1017
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 997 TATGAACATTTGGGAGAATGGCTTGGAGGAAGAACCGGCGATGGAACGGGTCGAGTCGGG 1056
Query 1018 TCGTGAACTGCGAGCGCAGCTGTTCCAGAAGCTGAGCAAAGAGAATTGCATGGGTCGTG- 1076
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 1057 TCGTGAACTGCGAGCGCAGCTGTTCGAGAAGCTGAGCAAAGAGAATTGCATGGGTCG-GA 1115
Query 1077 TTGACCCGGATCCGGATCAGGGAGCGGGTGATGCTCCTGATGTCGGGTGGGTCTCTGACT 1136
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1116 TTGAACCGGATCCGGATCAGGGAGCGGGTGATACTCCTGATGTCGGGTGGGTCTCTGACT 1175
Query 1137 TGGTTATGTGATTTTAACCGGATTCGTAAA 1166
|||||||||||||| |||||||||||||||
Sbjct 1176 TGGTTATGTGATTTGAACCGGATTCGTAAA 1205
Score = 276 bits (149), Expect = 5e-73
Identities = 199/222 (90%), Gaps = 8/222 (4%)
Strand=Plus/Plus
Query 1225 TTTATTATTTCCTAATTTCGTATAATCTCTATTTTATAATCGATGATTCCAGGGAGATTT 1284
|||||||||||||||||||||||||||||| || |||||||||||||| ||||||
Sbjct 1329 TTTATTATTTCCTAATTTCGTATAATCTCTGTTCCATAATCGATGATTCGAGGGAG---- 1384
Query 1285 ATTTCTCAGTGTATAGGAGTTGCTTAGGATTTTTCATTATGATGGATTCACTAATAATGA 1344
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1385 ATTCCTCAGTGTATAGGAGTTGCTTAGGATTTTTCATTATGATGGATTCACTAATATTGA 1444
Query 1345 TATTGTTGGTTTTTGGTTTTG--ATAT-T-ATGATGTTCGATGCAAATCTCAATGTAATT 1400
||||||||||| ||| |||| |||| | ||||||| ||||||| || ||||||||||
Sbjct 1445 TATTGTTGGTTATTGTTTTTTTTATATATTATGATGTAAGATGCAAGTCGCAATGTAATT 1504
Query 1401 ATTAAATATCTAATGAATGAAATGAGGATGTAAATTATTTAT 1442
||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1505 ATTAAATATCTTATGAATGAAATGAGAATGTAAATTATTTAT 1546
Score = 52.8 bits (28), Expect = 9e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 1 AAGCTTTGCCGGAGATTTAGCAAACACA 28
||||||||||||||||||||||||||||
Sbjct 12 AAGCTTTGCCGGAGATTTAGCAAACACA 39
> AT4G29190.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family
protein | chr4:14391938-14393373 REVERSE LENGTH=1436
Length=1436
Score = 654 bits (354), Expect = 0.0
Identities = 783/984 (80%), Gaps = 54/984 (5%)
Strand=Plus/Plus
Query 186 GTAGTATGATGGAAGCTTTGGCTGCGTTACAACGTTATCTT-CCGTCTAACGAACCGGAT 244
|||| ||| | ||||||||||| | ||| || |||||| || ||||||||||||||||||
Sbjct 186 GTAGCATGCTTGAAGCTTTGGCGGGGTTGCAGCGTTAT-TTGCCGTCTAACGAACCGGAT 244
Query 245 CCGGATTC-TGATCCGGATCTCTCGGGTCCGGATTCACCCATCGATGCTTATTCGTGTGA 303
||||| || | | |||||||| | ||||||||||||||| ||||||||||| || || ||
Sbjct 245 CCGGAGTCAT-ACCCGGATCTATTGGGTCCGGATTCACCAATCGATGCTTACTCATGCGA 303
Query 304 TCATTTTCGGATGTATGAGTTT-AAAGTGA-GACGTTGCGCTCGTGGTCGGAGTCATGAT 361
||||| || ||||| || ||| ||||| | || | || |||||||| ||||||||||||
Sbjct 304 CCATTTCCGTATGTACGA-TTTCAAAGTCAGGA-GGTGTGCTCGTGGCCGGAGTCATGAT 361
Query 362 TGGACGGAGTGTCCTTATGCTCATCCCGGAGAAAAAGCTCGCCGTCGTGATCCGAGGAAG 421
|||||||||||||| || |||||||||||||||||||||||||| | ||||||||||||
Sbjct 362 TGGACGGAGTGTCCGTACGCTCATCCCGGAGAAAAAGCTCGCCGGAGAGATCCGAGGAAG 421
Query 422 TTTCATTATTCCGGTACGGCGTGTCCTGAGTTTCGTAAAGGTGGTTGCAAGAGAGGAGAC 481
| ||||| || |||||||| |||||||| |||||||||||||| ||||||| ||| |||
Sbjct 422 TACCATTACTCTGGTACGGCTTGTCCTGATTTTCGTAAAGGTGGCTGCAAGAAAGGTGAC 481
Query 482 GCGTGTGAGTTTTCTCATGGTGTTTTTGAGTGTTGGCTTCATCCGGCGCGTTACCGGACT 541
| ||||||||| ||||||||||||| ||||||||||||||||| || |||||||| |||
Sbjct 482 TCTTGTGAGTTTGCTCATGGTGTTTTCGAGTGTTGGCTTCATCCAGCTCGTTACCGTACT 541
Query 542 CAGCCGTGTAAAGACGGTGGTAACTGTCGCCGTCGTGTTTGTTTCTTCGCTCATTCGCCG 601
|||||||||||||||||||||||||||| ||| |||||||||| |||||||| |||
Sbjct 542 CAGCCGTGTAAAGACGGTGGTAACTGTCTCCGGAAAATTTGTTTCTTTGCTCATTCACCG 601
Query 602 GATCAGCTTAGGGTTTTGCCTAGTCAAAGCCCTGATC-GTGTTGATTCATTCGACGGTTT 660
|||||||||||| |||| | || || |||||||| | | |||||||| || |||| |||
Sbjct 602 GATCAGCTTAGGTTTTTACATACTCGGAGCCCTGA-CAGAGTTGATTCTTTTGACG-TTT 659
Query 661 -GTCTCCGATTCGT---AGAGCGTTTCAGTT-TACGATTTCGCCG-TCGTCTAACTCCCC 714
||||||||||||| ||||| |||||| | | ||||||| ||| | ||| || ||
Sbjct 660 CGTCTCCGATTCGTGCTAGAGCATTTCAGCTGT-CGATTTCTCCGGTT-TCTGGTTCGCC 717
Query 715 GCCGGTGAGTCCTCGAGGTGACTCGGACTCGTCGCCG-T--CTC--T-ACTGAGTCGTTC 768
||| ||||||| ||| ||||||||| || || ||| | ||| | ||||||||| ||
Sbjct 718 ACCGATGAGTCCAAGAGCTGACTCGGAGTCTTCTCCGATGACTCAGTCACTGAGTCGATC 777
Query 769 ACTCGGATCTAATTTGGGAAACGACGTCGTTGCGTCCCTGAGGAATCTGCAGCTTAGTAA 828
||||| ||| || | ||||||||||||| | || | |||||| | ||| ||| |
Sbjct 778 TCTCGGGTCTTGTTCGATAAACGACGTCGTTCCTTCGTTTAGGAATTTACAGTTTAATTC 837
Query 829 AGTGAAGTCTCTTTCTTCGTCGTACAACAATGAAATCGGAGGATACGGATCTGGGTTCGG 888
|| || || |||| | ||||| | |||| | | | ||||| | |||
Sbjct 838 GGTAAAATCA-TTTC--C-TCGTA-A-CAATCCTTT---AT--T-CGGAT-T-----CGG 879
Query 889 GTCGCCTCGTGGATCGGTTTTGGGTCCTGGTTTTCGGAGCT-TACCAACAACACCGACCC 947
|||||| ||||||||| | ||||||||||| |||| | || | || |||||||||||||
Sbjct 880 GTCGCCCCGTGGATCGATCTTGGGTCCTGGGTTTCAGT-CTCTGCCTACAACACCGACCC 938
Query 948 GACCCGGGTTTATGAACATTTGGGAAAATGGTTTGGAGGAAGAACCGGCGATGGAACGGG 1007
|||| ||| | || | |||||||| ||||||||||||||||||| | ||||| || |
Sbjct 939 GACCAGGGAATCTGGATATTTGGGAGTATGGTTTGGAGGAAGAACCCGTAATGGAGCGTG 998
Query 1008 TCG---AGTCGGGTCGTGAACTGCGAGCGCAGCTGTTCCAGAAGCTG-AGCAAAGAGAAT 1063
||| ||||||||||||| || |||| || || | |||| ||| | ||| ||||||
Sbjct 999 TCGTTGAGTCGGGTCGTGAGCTACGAGAAAAGATGCGCGAGAAACTGCA-CAAGGAGAAT 1057
Query 1064 TGCATGGGTCGTGTTGACCC-GGATCCGGATCAGGGAGC-GGGTGATGCTCCTGATGTCG 1121
||||||| ||| |||| ||| ||||||||||||| | |||||| |||||||||||||
Sbjct 1058 TGCATGGATCGAGTTG-CCCAGGATCCGGATCAGA-ATTTGGGTGAGGCTCCTGATGTCG 1115
Query 1122 GGTGGGTCTCTGACTTGGTTATGT 1145
||||||| |||||| || | ||||
Sbjct 1116 GGTGGGTATCTGACCTGCTCATGT 1139
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71083971720
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5