BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg480490

Length=540
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G19790.1 | Symbols:  | SNARE-like superfamily protein | chr2...   784    0.0  


> AT2G19790.1 | Symbols:  | SNARE-like superfamily protein | chr2:8527231-8528533 
FORWARD LENGTH=641
Length=641

 Score =  784 bits (424),  Expect = 0.0
 Identities = 503/537 (94%), Gaps = 21/537 (4%)
 Strand=Plus/Plus

Query  1    GAGCTTGTTGGAGATGGGAATAAGGTTCATATTGATGGTGAACAAGCAAGGCCAGACTCG  60
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  59   GAGCTAGTTGGAGATGGGAATAAGGTTCATATTGATGGTGAACAAGCAAGGCCAGACTCG  118

Query  61   CCTTGCTCAGTACTACGAATGGCTCACTCTCGAGGAACGTCGCGCTCTCGAAGGCGAAAT  120
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  119  TCTTGCTCAGTACTACGAATGGCTCACTCTCGAGGAACGTCGCGCTCTCGAAGGCGAAAT  178

Query  121  CGTCCGTAAATGCCTCGCTCGCAACGACCAGCAGTGTTCGTTTGTTGAACATCGCAACTA  180
            |||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||
Sbjct  179  CGTCCGTAAATGCCTCGCTCGCAACGACCAACAGTGTTCGTTTGTCGAGCATCGCAACTA  238

Query  181  CAAGATAGTCTACAGGCGTTACGCATCTCTCTTCTTCATGGTTGGGGTTGATGACGACGA  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  239  CAAGATAGTCTACAGGCGTTACGCATCTCTCTTCTTCATGGTTGGGGTTGATGACGATGA  298

Query  241  AAACGAGCTGGCGATTCTAGAGTTTATACATCTTTTGGTTGAGACAATGGACAAGCATTT  300
            |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct  299  AAACGAGCTGGCGATTCTAGAGTTCATACATCTTTTGGTCGAGACAATGGACAAGCATTT  358

Query  301  TGGAAATGTGTGTGAGCTTGACATAATGTTCCATCTGGAGAAAGCTCATTTCATGCTGGA  360
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  359  TGGAAATGTGTGTGAGCTAGACATAATGTTCCATCTGGAGAAAGCTCATTTCATGCTGGA  418

Query  361  AGAAATGGTGATGAATGGTTGCATTGTGGAGACAAGCAAAGCCAACATACTTTCACCTAT  420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  419  AGAAATGGTGATGAATGGTTGCATTGTGGAGACAAGCAAAGCCAACATACTTTCACCTAT  478

Query  421  ACAACTTATGGACAAAGCCCATTAA-G-T--------T-T--CTATTTC-------C-GT  459
            ||||||||||||||||||||||||| | |        | |  |||||||       | ||
Sbjct  479  ACAACTTATGGACAAAGCCCATTAATGCTAAACACCCTGTTTCTATTTCTGTTAATCCGT  538

Query  460  TTCATCACTCTGTTACACACCACTTCTTGTATTATTATTAAAGATGCTTCAAAGAGA  516
            ||||||||| ||||||||||  ||||||||||||||||||| |||||||||||||||
Sbjct  539  TTCATCACTTTGTTACACACTTCTTCTTGTATTATTATTAACGATGCTTCAAAGAGA  595



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25870585705


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5