BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480491
Length=1846
Score E
Sequences producing significant alignments: (Bits) Value
AT2G19780.1 | Symbols: | Leucine-rich repeat (LRR) family prot... 2571 0.0
AT4G29240.1 | Symbols: | Leucine-rich repeat (LRR) family prot... 859 0.0
> AT2G19780.1 | Symbols: | Leucine-rich repeat (LRR) family protein
| chr2:8522678-8525093 REVERSE LENGTH=1945
Length=1945
Score = 2571 bits (1392), Expect = 0.0
Identities = 1748/1907 (92%), Gaps = 76/1907 (4%)
Strand=Plus/Plus
Query 1 AGTATTAGCTAATACTATGTGGTAATTTGTCGTTTTTAATAATTTCCTTTGTATCAAA-T 59
||||| | |||||||||| ||||||||||||||||||||| ||||||||||||||||| |
Sbjct 38 AGTATAAACTAATACTATCTGGTAATTTGTCGTTTTTAATTATTTCCTTTGTATCAAATT 97
Query 60 TGGTCATAACACGCAACAGTGATGTTGTTTTTACGTCGGTCAGAATAGTGGTTCAGTTCT 119
||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 98 TGGTCATAATACGCAACAGTAATGTTGTTTTTACGTCGGTCACAATAGTGGTTCAGTTCT 157
Query 120 TCACATTCTTACTTTTGGTGGAAATGGAATAACAGAAAAATCAACTGATAGGACAGACAA 179
||||||| |||| |||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 158 TCACATTATTAC-TTTGGTGGAAATGGAATATCAGAAAAATCAACTGATATGACAGACAA 216
Query 180 ATATTATGATTAGCAAAATCGGAGTCAATGGAAAGTGGAAAC----ACATTATTAttttt 235
||||||||| |||| |||||||||||| |||||||||| ||| | | | || | |
Sbjct 217 ATATTATGA-TAGC-AAATCGGAGTCAGTGGAAAGTGG-AACGTGGA-AACACTA-ATAT 271
Query 236 ttttCAGGTTCTTTAACaaaaaaa-TCGAGACACGAATCCTCTGAACACAGCAGTTGATG 294
| | ||||||||||||||||||| |||| ||| ||||||||||||||||| ||||||||
Sbjct 272 TAGT-AGGTTCTTTAACAAAAAAAGTCGATACAAGAATCCTCTGAACACAGAAGTTGATG 330
Query 295 AATTATAGCACGAAGCCATTGaaaaaaaTAAAACCTAAGTTGAAAACAAAACAGTAACTG 354
||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 331 AATTATAGCACGAGGCCATTGGAAAAAATAAAACCTAAGTTGAAAACAAAACAGTAACGG 390
Query 355 AGAAGCAAAACTCCATCAATC-AA---A-------C-C---TGCT-C--ATCATCAATCA 396
||||||||||||||||||||| || | | | |||| | |||||||||||
Sbjct 391 AGAAGCAAAACTCCATCAATCAAACCCATTGCCCCCACATTTGCTGCTAATCATCAATCA 450
Query 397 ATGCTTCAACGACACTTTTGTTAACAAACCTCATTAATCCAACAAAAGTTTCAACATTCC 456
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 451 ATGCTTCAACCACACTTTTGTTAACAAACCTCATTAATCCAACAAAAGTTTCAACATTCC 510
Query 457 CCAAGAAGAAAAGACAGCAACTTTAATC-AAGC-T-TC-------TTGAGTATCAAAAAG 506
|||||||||||||||||||||||||||| |||| | || |||||||||||||||
Sbjct 511 CCAAGAAGAAAAGACAGCAACTTTAATCAAAGCTTCTCGAGTTTGTTGAGTATCAAAAAG 570
Query 507 CAAAACAAGAATGATGAAGAAGAAAGGCA-C--C-A-AA-AACTTTAGCCTCCTGTCGTT 560
|||||||||||| |||||||||||||||| | | | || ||||||||||| ||||| ||
Sbjct 571 CAAAACAAGAATCATGAAGAAGAAAGGCACCAACAACAACAACTTTAGCCTTCTGTCTTT 630
Query 561 GTTTCTGTTCCTG---GGTTTGATCCTAACAGATGGATACAGCATTGGAGTCGGAGTTGG 617
|| |||||||||| ||||||| |||||| | ||||||||||||||||||||||||||
Sbjct 631 GTCTCTGTTCCTGAATTGTTTGATTCTAACAAACGGATACAGCATTGGAGTCGGAGTTGG 690
Query 618 AATCGGCGGCGGAGACGGTGACGACGGCGGTGTTTGGATAGGTGGAGGAAACCCTAATTC 677
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 691 AATCGGCGGTGGAGACGGTGACGACGGCGGAGTTTGGATAGGTGGAGGAAACCCTAATTC 750
Query 678 CAATCCTGGCTCAGCTCC-AA--AGCAACAGACAACAAATGCAGCTTACAATGCTCTTCA 734
|||||||||||||||||| || | |||||||||||||||||||||||||||||||||||
Sbjct 751 CAATCCTGGCTCAGCTCCAAACCAACAACAGACAACAAATGCAGCTTACAATGCTCTTCA 810
Query 735 ATCTTGGAAATCTGCCATTACAGAAGATCCATCTGGTGTTCTTAAGACATGGGTTGGTGA 794
|||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 811 ATCTTGGAAATCCGCCATTACAGAGGATCCATCTGGTGTTCTTAAAACATGGGTTGGTGA 870
Query 795 AGATGTTTGTTCTTACAGAGGCGTGTTCTGTTCTGGTTCAT-TGATAACCTCCATAGATC 853
|||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||
Sbjct 871 AGATGTTTGTTCTTACAGAGGCGTGTTCTGTTCTGGCTCATCT-ATAACCTCCATAGATC 929
Query 854 TAAACAAAGCAAATCTCAAAGGCACCATTGTTAAAGACCTCTCTTTACTCTCAGACCTAA 913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 930 TAAACAAAGCAAATCTCAAAGGCACCATTGTTAAAGACCTCTCTTTACTCTCAGACCTAA 989
Query 914 CCATTCTTCATCTCAATAGCAACAGATTCTTTGGTCAAATCCCAGATTCTTTCAAGAATC 973
|||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||
Sbjct 990 CCATTCTTCATCTCAACAGTAACAGATTCTCTGGTCAAATCCCAGATTCTTTCAAGAATC 1049
Query 974 TTGATTCTCTTCAAGAACTCGATCTCAGCAACAACAGATTCTCTGGTTCTTTCCCTCAAG 1033
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1050 TTGATTCTCTTCAAGAACTCGATCTCAGCAACAACAGATTCTCCGGTTCTTTCCCTCAAG 1109
Query 1034 TCACACTCTACATCCCAAATCTGGTTTACCTCGATCTCCGGTTCAACAATTTCACTGGCT 1093
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1110 TCACACTCTACATCCCAAATCTGGTTTACCTCGATCTCCGGTTCAACAATTTCACTGGCT 1169
Query 1094 CTATACCGGAAAATCTCTTCAACAAACAATTAGACGCGATTCTTCTCAACAACAATCAAT 1153
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1170 CTATACCGGAAAATCTCTTCAACAAACAATTAGACGCGATTCTCCTCAACAACAATCAAT 1229
Query 1154 TCACCGGAGAAATTCCTGGGAATCTCGGTTACTCTACAGCTTCGGTGATTAATCTCGCTA 1213
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1230 TCACCGGAGAAATCCCTGGGAATCTCGGTTACTCTACAGCTTCGGTGATTAATCTCGCTA 1289
Query 1214 ATAATAAATTATCCGGCGAAATTCCGACGAGTTTTGGTATCACCGGTTCGAAATTGAAAG 1273
| || ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1290 ACAACAAATTATCCGGCGAAATCCCGACGAGTTTCGGTATCACCGGTTCGAAATTGAAAG 1349
Query 1274 AGGTTTTGTTCTTGAATAACCAGTTAACCGGTTGTATACCGGAATCAGTCGGTTTATTCT 1333
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1350 AGGTTTTGTTCTTGAATAACCAGTTAACCGGTTGTATACCGGAATCAGTTGGTTTATTCT 1409
Query 1334 CCGACATTGAAGTCCTCGACGTTAGTTTCAATTCATTGATGGGTCATGTCCCTGATACGA 1393
||||||||||||| | || ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1410 CCGACATTGAAGTGTTTGATGTTAGTTTCAATTCATTGATGGGTCATGTCCCTGACACGA 1469
Query 1394 TCTCTTGCTTATCGGAGATTGAAGTTTTGAATCTCGGGCACAACAAATTCTCCGGTGATC 1453
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1470 TCTCTTGCTTATCGGAGATTGAAGTTTTGAATCTCGGACACAACAAATTCTCCGGTGATC 1529
Query 1454 TTCCCGATTTGGTTTGCACTTTGAGGAATCTGATAAACCTGACGGTTGCTTTCAATTTCT 1513
|||| |||||||| || |||||||||||||||||||| ||||||||| ||||||| ||||
Sbjct 1530 TTCCTGATTTGGTCTGTACTTTGAGGAATCTGATAAATCTGACGGTTTCTTTCAACTTCT 1589
Query 1514 TCTCTGGGTTTAGCTCTGAGTGCTCGAGTCTTAGCGTTGGGTTTGATTTCACCGGAAATT 1573
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 1590 TCTCTGGGTTTAGCTCTCAGTGCTCGAGCCTTAGCGTTGGGTTTGATTTCACCGGAAATT 1649
Query 1574 GTATTCCCGGTAAGGGTTATCAACGGCCGCAACCGGATTGTTCGGCGATTCCCGGCGGTC 1633
|||||||||||||||||||||||||||| || |||||||||||||||||||| || || |
Sbjct 1650 GTATTCCCGGTAAGGGTTATCAACGGCCTCAGCCGGATTGTTCGGCGATTCCTGGTGGCC 1709
Query 1634 AATTGAGCTGTCTTAGGATTCCGGCGCAGCCGTTAACGTGTGCTGCGATTAGCGTGGGAT 1693
||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1710 AATTGAGCTGTTTTAGAATTCCGGCGCAGCCGTTAACGTGTGCTGCGATTAGCTTGGGGT 1769
Query 1694 TGAAGGTGGCGTCATCTCCATGAAAACACAAAG-GTTTTTTGGTAATTGTATTGGTTATG 1752
|||||||||| ||||||||||||||||| ||| ||| | | ||||||||||||||
Sbjct 1770 TGAAGGTGGCTTCATCTCCATGAAAACATAAAAAGTTCGAAGCTT-TTGTATTGGTTATG 1828
Query 1753 CAATTGTG--T-GA-AGAA-AA--TGGTTTTTATCAGTTACATACATTATTAATCAAACT 1805
|||||||| | || |||| || ||||||||||||||||||| | ||||||||||||
Sbjct 1829 CAATTGTGACTTGATAGAAGAAAATGGTTTTTATCAGTTACAT---T-ATTAATCAAACT 1884
Query 1806 GATTTA-----GTAGA-AAGAAGCTTATTTCTGATTTTGAAACCTTT 1846
|||||| ||||| || || ||||||||||||||||||||||||
Sbjct 1885 GATTTATATTAGTAGATAA-AA-CTTATTTCTGATTTTGAAACCTTT 1929
> AT4G29240.1 | Symbols: | Leucine-rich repeat (LRR) family protein
| chr4:14418605-14420250 FORWARD LENGTH=1646
Length=1646
Score = 859 bits (465), Expect = 0.0
Identities = 826/998 (83%), Gaps = 33/998 (3%)
Strand=Plus/Plus
Query 717 AGCTTACAATGCTCTTCAA-TCTTGGAAATCTGCCATTACAGAAGATCCATCTGGTGTTC 775
||||||||||||||||||| | ||||||||| ||||| | ||| |||||||| |||||
Sbjct 446 AGCTTACAATGCTCTTCAAGT-TTGGAAATCAGCCATGAGAGAGGATCCATCAAATGTTC 504
Query 776 TTAAGACATGGGTTGG-TGAAGATGTTTGTTCTTACAGAGGCGTGTTCTGTTCTGGTTC- 833
| || ||||||||||| | ||||||||||||||||| ||| |||||||||||||| ||
Sbjct 505 TCAAAACATGGGTTGGAT-CAGATGTTTGTTCTTACAAAGGTGTGTTCTGTTCTGG-TCA 562
Query 834 AT-TGATAACCTCCATAGATCTAAACAAAGCAAATCTCAAAGGCACCA-TTGTTAAAGAC 891
|| | |||||||| |||||||| ||| | |||||||||||||||| || |||| ||||||
Sbjct 563 ATCT-ATAACCTCTATAGATCTTAACCATGCAAATCTCAAAGGCA-CACTTGTCAAAGAC 620
Query 892 CTCTCTTTACTCTCAGACCT-AACCATTCTTCATCTCAATAGCAACAGATTCTTTGGTCA 950
|| |||||||||||||||| || ||||| |||||||| || |||||||||| || ||
Sbjct 621 CTAGCTTTACTCTCAGACCTCAA-TATTCTCCATCTCAACAGTAACAGATTCTCAGGGCA 679
Query 951 AATCCCAGATTCTTTCAAGAATC-TT-GATTCTCTTCAAGAACTCGATCTCAGCAACAAC 1008
|||||||||||||||| | |||| || | ||||||||||||||| ||||| ||||||||
Sbjct 680 AATCCCAGATTCTTTC-A-AATCTTTAGCTTCTCTTCAAGAACTTGATCTAAGCAACAAT 737
Query 1009 AGATTCTCTGGTTCTTTCCCTCAAGTCACACTCTACATCCCAAATCTGGTTTACCTCGAT 1068
| | |||| ||| |||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 738 AAACTCTCAGGTCCTTTCCCTTTAGTCACACTCTACATACCAAATCTGGTTTACCTCGAT 797
Query 1069 CTCCGGTTCAACAATTTCACTGGCTCT-ATACCGGAAAATCTCTTCAACAAACAATTAGA 1127
|||||||| || | ||| || || | | || || ||| | || |||||||||| |||||
Sbjct 798 CTCCGGTTTAATAGTTTAACCGG-TTTCATCCCTGAAGAGCTTTTCAACAAACGGTTAGA 856
Query 1128 CGCGATTCTTCTCAACAACAATCAATTCACCGGAGAAATTCCTGGGAATCTCGGTTACTC 1187
||||||||| ||||| |||||||||||| ||||||||| || | || ||||| | ||
Sbjct 857 CGCGATTCTCCTCAATAACAATCAATTCGTCGGAGAAATCCCAAGAAACCTCGGAAATTC 916
Query 1188 TACAGCTTCGGTGATTAATCTCGCTAATAATAAATTATCCGGCGAAATTCCGACGAGTTT 1247
| | |||||||| ||||||||||| ||||| | ||| |||||||||||||||||||||||
Sbjct 917 TCCGGCTTCGGTTATTAATCTCGCGAATAACAGATTTTCCGGCGAAATTCCGACGAGTTT 976
Query 1248 TGGTATCACCGGTTCGA-AATTGAAAGAGGTTTTG-TTCTTGAATAACCAGTTAACCGGT 1305
|||| | || || |||| || || || |||||| || |||||||||||||||||||||
Sbjct 977 TGGTCTGACGGGATCGAGGGTT-AAGGAAGTTTTGCTT-TTGAATAACCAGTTAACCGGT 1034
Query 1306 TGTATACCGGAATCAGTCGGTTTATTCTCCGACATTGAAGTCCTCGACGTTAGTTTCAAT 1365
|||||||||||||| || ||| | ||||| || ||||||||| | |||||||| | ||||
Sbjct 1035 TGTATACCGGAATCTGTTGGTATGTTCTCTGAAATTGAAGTCTTTGACGTTAGCTACAAT 1094
Query 1366 TCATTGATGGGTCATGTCCCTGATACGATCTCTTGCTTATCGGAGATTGAAGTTTTGAAT 1425
|||||||||||||||| || ||||||||||||||||| |||| ||||||| ||||||||
Sbjct 1095 GCATTGATGGGTCATGTTCCAGATACGATCTCTTGCTTGTCGGCGATTGAAATTTTGAAT 1154
Query 1426 CTCGGGCACAACAAATTCTCCGGTGATCTTCCCGATTTGGTTTGCACTTTGAGGAATCTG 1485
|| | ||||| |||||||| || || |||| ||||||||||| | |||||||||||
Sbjct 1155 CTTGCTCACAATAAATTCTCTGGGGAGGTTCCTGATTTGGTTTGTTCGTTGAGGAATCTT 1214
Query 1486 ATAAACCTGACGGTTGCTTTCAATTTCTTCTCTGGGTTTAGCTCTGAGTG--CT-CGAGT 1542
|| || || || ||||| ||||||||||||||||||||||||||||| || || | ||
Sbjct 1215 ATTAATCTCACTGTTGCGTTCAATTTCTTCTCTGGGTTTAGCTCTGAATGTTCTTCCAGG 1274
Query 1543 CTTAGCGTT-GGGTTTGATTTCACCGGAAATTGTATTCCCGGTAAGGG-TTATCAACGGC 1600
|||| || |||||||||||| || |||||||||||||| | || || || ||||
Sbjct 1275 GTTAGT-TTCGGGTTTGATTTCGTTGGGAATTGTATTCCCGGGA-GGAATTCGCAGCGGC 1332
Query 1601 CGCAACCGGATTGTTC-GGCGATTCCCGGCGGT-CAATTGAGCTGTCTTAGGATTCCGGC 1658
|||| ||||||||||| || ||||| ||||| | || ||||||| ||||||||||| |
Sbjct 1333 CGCAGCCGGATTGTTCCGGTTATTCC-GGCGGAGCTAT-GAGCTGTTTTAGGATTCCGAC 1390
Query 1659 GCAGCCGTTAACGTGTGCTGCGATTAGCGTGGGATTGA 1696
|||||| || | ||||||||||| || || |||||||
Sbjct 1391 GCAGCCTTTGGCTTGTGCTGCGATAAGTGTTGGATTGA 1428
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91364991900
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5