BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480492
Length=671
Score E
Sequences producing significant alignments: (Bits) Value
AT2G19770.1 | Symbols: PRF5 | profilin 5 | chr2:8519638-8521192... 963 0.0
AT4G29340.1 | Symbols: PRF4 | profilin 4 | chr4:14447647-144486... 412 2e-114
> AT2G19770.1 | Symbols: PRF5 | profilin 5 | chr2:8519638-8521192
REVERSE LENGTH=725
Length=725
Score = 963 bits (521), Expect = 0.0
Identities = 629/679 (93%), Gaps = 16/679 (2%)
Strand=Plus/Plus
Query 1 CATACATACGTagagagat-caaaaaacctaatcgcgcagagtaaaagcaaaaaagaaga 59
||||||||||||||||||| ||||| ||| || | |||||||||||||| ||| ||||
Sbjct 1 CATACATACGTAGAGAGATCCAAAATACCCAACCTCGCAGAGTAAAAGC---AAA-AAGA 56
Query 60 agaagaaatcagagagaaTGTCGTGGCAAGCATACGTTGATGAGCATTTGATGTGTGATG 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 57 AGAAGAAATCAGAGAGAATGTCGTGGCAAGCATACGTTGATGAGCATTTGATGTGTGATG 116
Query 120 TCGGCGACGGCCAAGGTCACCACCTAACCGCCGCCGCTATCATCGGCCATGACGGTAGCG 179
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 117 TCGGCGACGGCCAAGGTCACCACCTTACCGCCGCCGCTATCATCGGCCATGATGGTAGCG 176
Query 180 TTTGGGCTCAGAGCGCTAATTTTCCTCAGTTCAAACCTCAAGAGATCACGGACATTATGA 239
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 177 TTTGGGCTCAGAGCGCTAATTTTCCTCAGTTCAAACCTCAAGAGATCACAGACATTATGA 236
Query 240 AGGATTTCGATGAGCCGGGTCATCTCGCTCCCACGGGCT-TGTTCCTCGCAGGGCTAAAG 298
|||||||||||||||| ||||| |||||||||||||| | ||||||||||||||||||||
Sbjct 237 AGGATTTCGATGAGCCTGGTCACCTCGCTCCCACGGG-TATGTTCCTCGCAGGGCTAAAG 295
Query 299 TATATGGTAATCCAAGGCGAGCCTAATGCTGTCATCCGTGGCAAGAAGGGAGCTGGAGGG 358
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 296 TATATGGTCATCCAAGGCGAGCCTAATGCTGTCATCCGTGGCAAGAAGGGAGCTGG-GGG 354
Query 359 A-TCACGATCAAGAAAACAGGACAATCAATGGTGTTTGGTTTGTACGAAGAGCCAGTGAC 417
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 355 AATCACGATCAAGAAAACAGGACAATCAATGGTGTTTGGTCTGTACGAAGAGCCAGTGAC 414
Query 418 TCCAGGACAATGCAACATGGTTGTCGAGAGGTTGGGTGATTACTTGATCGAACAGGGTCT 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 TCCAGGACAATGCAACATGGTTGTCGAGAGGTTGGGTGATTACTTGATCGAACAGGGTCT 474
Query 478 TTAAACCATCTACAATGCTTTACATCTCTTTTTCTA-AT-TCATAAAACCATTGTCTCTC 535
|| |||||||||||||| |||| |||||||| |||| | |||| ||||| |||| ||||
Sbjct 475 TTGAACCATCTACAATGTTTTATATCTCTTTCTCTATAAATCATTAAACCTTTGTTTCTC 534
Query 536 TTTTTGGGTGCATGGTTTTG-GTTTTTAAAAAATTA-TTTGGGGTCTTTCTGGTTTCTAC 593
||||||||| ||||||| |||| || || ||| ||| ||||||| |||||||||||
Sbjct 535 TTTTTGGGTTT-TGGTTTTCCGTTTCTATAAT-TTAATTTTGGGTCTTCCTGGTTTCTAC 592
Query 594 CTTAGCAAAGTTTAACAGAAAACTGAAGCCTA-GGTTGCAGACAATAACACAAAGCCTGT 652
||||| |||||||||||||| || ||||||| ||||||||| |||||||| ||||||||
Sbjct 593 TTTAGCCAAGTTTAACAGAAAGCTTAAGCCTAAGGTTGCAGATAATAACACTAAGCCTGT 652
Query 653 GTGAAGAAGCCGAGACTTA 671
||||||||||| |||||||
Sbjct 653 GTGAAGAAGCCAAGACTTA 671
> AT4G29340.1 | Symbols: PRF4 | profilin 4 | chr4:14447647-14448698
FORWARD LENGTH=707
Length=707
Score = 412 bits (223), Expect = 2e-114
Identities = 378/452 (84%), Gaps = 14/452 (3%)
Strand=Plus/Plus
Query 49 aaaaaagaagaagaagaaatcagagagaaTGTCGTGGCAAGCATACGTTGATGAGCATTT 108
|||||| ||||| ||| || ||| || |||||||||||| | |||||||||||||||||
Sbjct 48 AAAAAATAAGAA-AAG-AAGAAGA-AG-ATGTCGTGGCAAACTTACGTTGATGAGCATTT 103
Query 109 GATGTGTGATGTCGGCGACGGCCAAGGTCACCACCTAACCGCCGCCGCTATCATCGGCCA 168
|||||||||||| ||||| || ||||| |||||||| || || ||||||||| | || ||
Sbjct 104 GATGTGTGATGTTGGCGATGGTCAAGGACACCACCTTACTGCTGCCGCTATCGTTGGTCA 163
Query 169 TGACGGTAGCGTTTGGGCTCAGAGCGCTAATTTTCCTCAGTTCAAACCTCAAGAGATCAC 228
||||||||||||||||||||||||||| || || ||||||||||| || ||| |||
Sbjct 164 TGACGGTAGCGTTTGGGCTCAGAGCGCCAACTTCCCTCAGTTCAAGGGACAGGAGTTCA- 222
Query 229 G-GACATTATGAAGGATTTCGATGAGCCGGGTCATCTCG-CTCCCACGGGCTTGTTCCTC 286
| || |||||||| |||||||| || |||||||| || | | |||||||| || ||| |
Sbjct 223 GTGATATTATGAAAGATTTCGACGAACCGGGTCA-CTTGGCACCCACGGGATTATTCATG 281
Query 287 GCAGG-GCTAAAGTATATGGTAATCCAAGGCGAGCCTAATGCTGTCATCCGTGGCAAGAA 345
||||| || |||||| ||||| |||||||| ||||| ||||| ||||||||||||||
Sbjct 282 GCAGGAGC-AAAGTACATGGTGATCCAAGGTGAGCCCGGGGCTGTAATCCGTGGCAAGAA 340
Query 346 GGGAGCTGGAGGGATCACGATCAAGAAAACAGGACAATCAATG-GTGTTTGGTTTGTACG 404
|||||| ||||| || ||||| |||||||||||||| ||| || |||||||| | || |
Sbjct 341 GGGAGCAGGAGGCATAACGATAAAGAAAACAGGACAGTCA-TGTGTGTTTGGGATCTATG 399
Query 405 AAGAGCCAGTGACTCCAGGACAATGCAACATGGTTGTCGAGAGGTTGGGTGATTACTTGA 464
||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||| |
Sbjct 400 AAGAGCCAGTGACACCAGGACAGTGCAACATGGTCGTCGAGAGGTTGGGTGATTACCTCC 459
Query 465 TCGAACAGGGTCTTTA-AACCATCT-ACAATG 494
||||||||||||| || || | ||| ||||||
Sbjct 460 TCGAACAGGGTCTCTAGAATCTTCTTACAATG 491
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32451258962
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5