BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480493
Length=754
Score E
Sequences producing significant alignments: (Bits) Value
AT2G19760.1 | Symbols: PFN1, PRF1 | profilin 1 | chr2:8516787-8... 1029 0.0
AT4G29350.1 | Symbols: PFN2, PRO2, PRF2 | profilin 2 | chr4:144... 405 3e-112
> AT2G19760.1 | Symbols: PFN1, PRF1 | profilin 1 | chr2:8516787-8518167
REVERSE LENGTH=783
Length=783
Score = 1029 bits (557), Expect = 0.0
Identities = 715/785 (91%), Gaps = 36/785 (5%)
Strand=Plus/Plus
Query 1 ATTTCATTGTCTACACGATCATAAAGCTAAC-GA-AGAGAATTGAGAAGAAACAAACTCG 58
||||| |||||||||||||||||||||| || | |||||||||||||||||||||||||
Sbjct 1 ATTTCCTTGTCTACACGATCATAAAGCTCACAAAGAGAGAATTGAGAAGAAACAAACTCG 60
Query 59 TCGGAGAATTCAATACTCACCG--GA-GAAGAATAAGAAGATGTCGTGGCAATCATACGT 115
|||||||||||| ||||| ||| || |||||| ||||||||||| ||||||||||||||
Sbjct 61 TCGGAGAATTCAGTACTCGCCGAAGAGGAAGAAGAAGAAGATGTCTTGGCAATCATACGT 120
Query 116 CGATGATCACCTTATGTGTGATGTCGAAGGCAACAAGCTCACCGCCGCCGCAATTCTCGG 175
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 121 CGATGATCACCTTATGTGTGATGTCGAAGGCAACCATCTCACCGCCGCCGCAATTCTCGG 180
Query 176 TCAAGACGGCAGTGTCTGGGCTCAGAGCGACAAATTTCCTCAGTTGAAGCCTCAAGAAAT 235
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 CCAAGACGGCAGTGTCTGGGCTCAGAGCGCCAAATTTCCTCAGTTGAAGCCTCAAGAAAT 240
Query 236 CGATGGAATCAAGAAGGACTTTGAGGAGCCCGGGTTTCTTGCCCCAACCGGACTATTTCT 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CGATGGAATCAAGAAGGACTTTGAGGAGCCCGGGTTTCTTGCCCCAACCGGACTATTTCT 300
Query 296 TGGTGGCGAAAAATATATGGTTATCCAAGGTGAACAAGGAGCTGTCATCCGAGGGAAGAA 355
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 301 CGGTGGCGAAAAATACATGGTTATCCAAGGTGAACAAGGAGCTGTGATCCGAGGGAAGAA 360
Query 356 GGGACCTGGAGGCGTCACTATCAAGAAGACAAACCAAGCTCTAGTCTTTGGCATCTATGA 415
|||||||||||| ||||||||||||||||||||||||||| | ||||||||| |||| ||
Sbjct 361 GGGACCTGGAGGTGTCACTATCAAGAAGACAAACCAAGCTTTGGTCTTTGGCTTCTACGA 420
Query 416 TGAACCAATGACTGGAGGTCAATGCAACTTGGTTGTGGAAAGGCTCGGGGATTACCTCAT 475
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 421 TGAACCAATGACTGGAGGTCAATGCAACTTGGTTGTCGAAAGGCTCGGGGATTACCTTAT 480
Query 476 CGAGTCTGAACTCTAAA-CCAAGGTTTCGTTTCAGGTTCTTCTTTAACTAAAAAGAGTGT 534
||||||||||||||||| |||||||||| ||||||||||||||| ||||||| ||||||
Sbjct 481 CGAGTCTGAACTCTAAAACCAAGGTTTCATTTCAGGTTCTTCTT-AACTAAA--GAGTGT 537
Query 535 CAATGCCCTTTT-ATTGTGATTGATTGTAATGCTTTCAAACACAA-TCAATTGTTACTTT 592
|||||| ||||| |||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 538 CAATGCACTTTTTATTGTGATTGATTGTAATGCTTTCAAACACAAATCATTTGTTACTTT 597
Query 593 AGAACCAATTGTGATTG-TT--T-------G-----G-GTTTG--T--GTGT-T-CTTGT 630
||||||||||||||||| || | | | ||||| | |||| | |||||
Sbjct 598 AGAACCAATTGTGATTGATTGGTCTCCTTCGTTACCGAGTTTGAGTTTGTGTGTTCTTGT 657
Query 631 AATGACATTTGATCATCTTTATTTCTTCCATTTGTGTTGAGTCTTGATTTTTGTTTCTTC 690
|||||||||||||||||||| ||||| |||| ||| |||||| |||||||||||||||||
Sbjct 658 AATGACATTTGATCATCTTT-TTTCT-CCATATGTATTGAGTTTTGATTTTTGTTTCTTC 715
Query 691 CTACT-TTACTTTTTCTCGAATTGATCTGCGGTTTATGATCTGGGGTTCAAAACATTTTT 749
|| | ||||||||||| ||| |||||||| ||||||||| |||||||||||| ||||||
Sbjct 716 ATATTATTACTTTTTCTTGAAATGATCTGCTGTTTATGATTTGGGGTTCAAAATATTTTT 775
Query 750 GGTTT 754
|||||
Sbjct 776 GGTTT 780
> AT4G29350.1 | Symbols: PFN2, PRO2, PRF2 | profilin 2 | chr4:14450008-14451394
FORWARD LENGTH=798
Length=798
Score = 405 bits (219), Expect = 3e-112
Identities = 360/426 (85%), Gaps = 18/426 (4%)
Strand=Plus/Plus
Query 74 CTCACCGGAGAAGAATAAGAAGATGTCGTGGCAATCATACGTCGATGATCACCTTATGTG 133
||| ||||||||||| | ||||||||||||||||||||||||||||| || || |||||
Sbjct 108 CTCGCCGGAGAAGAA-GA-AAGATGTCGTGGCAATCATACGTCGATGACCATCTCATGTG 165
Query 134 TGATGTCGAAGGCAACAAGCTCAC-CGCCGCCGCAATTCT-CGGTCAAGACGGCAGTGTC 191
|| |||||||||||| | ||||| | | ||||| || || ||| |||||||||||||||
Sbjct 166 CGAGGTCGAAGGCAACCACCTCACACAC-GCCGCCAT-CTTCGGCCAAGACGGCAGTGTC 223
Query 192 TGGGCTCAGAGCGACAAATTTCC-TCAGTTGAAGCCT-CA-AGAAATCGATGGAATCAAG 248
|||||||||||| || ||||| ||||||||||||| || ||| | | | ||||||||
Sbjct 224 TGGGCTCAGAGCT-CAGCTTTCCCTCAGTTGAAGCCTGCAGAGATAGC-A-GGAATCAAC 280
Query 249 AAGGACTTTGAGGA-GCCCGGGTTTCTTGCCCCAACCGGACTATTTCTTGGTGGCGAAAA 307
|| |||||||| || ||| || ||||||||||||||| ||||| ||||| || || ||
Sbjct 281 AAAGACTTTGAAGAAGCC-GGACATCTTGCCCCAACCGGGCTATTCCTTGGCGGTGAGAA 339
Query 308 ATATATGGTTATCCAAGGTGAA-CAAGGAGCTGTCATCCGAGGGAAGAAGGGACCTGGAG 366
|| |||||| |||||||||| | ||||| |||||||||||||| ||||||||||| |
Sbjct 340 GTACATGGTTGTCCAAGGTGAGGCT-GGAGCCGTCATCCGAGGGAAAAAGGGACCTGGTG 398
Query 367 GCGTCACTATCAAGAAGACAAAC-CAAGCTCTAGTCTTTGGCATCTATGATGAACCAATG 425
| ||||||||||||||||| | | ||||||||||||||||| |||||||||||||| |||
Sbjct 399 GAGTCACTATCAAGAAGACTA-CTCAAGCTCTAGTCTTTGGTATCTATGATGAACCGATG 457
Query 426 ACTGGAGGTCAATGCAACTTGGTTGTGGAAAGGCTCGGGGATTACCTCATCGAGTCTGAA 485
|| ||||| |||||||||||||| ||||| |||||||| |||||||| ||||||||||
Sbjct 458 ACCGGAGGGCAATGCAACTTGGTCGTGGAGAGGCTCGGCGATTACCTTATCGAGTCTGGT 517
Query 486 CTCTAA 491
||||||
Sbjct 518 CTCTAA 523
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36620693163
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5