BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480494
Length=443
Score E
Sequences producing significant alignments: (Bits) Value
AT2G19750.1 | Symbols: | Ribosomal protein S30 family protein ... 656 0.0
AT4G29390.1 | Symbols: | Ribosomal protein S30 family protein ... 237 7e-62
> AT2G19750.1 | Symbols: | Ribosomal protein S30 family protein
| chr2:8514954-8516138 FORWARD LENGTH=604
Length=604
Score = 656 bits (355), Expect = 0.0
Identities = 416/445 (93%), Gaps = 5/445 (1%)
Strand=Plus/Plus
Query 1 GAGCATCGTCGTCTCCAACAGCCAAGAG-AGCAGAAGCTTGAAGAATCTCTGTAATCTGA 59
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 21 GAGCATCGTCGTCTCCAACAGCCAAGAGAAGCAGAAGCTTGAAGAATCTCTGTAATCTAA 80
Query 60 AAAATGGGAAAGGTCCACGGTTCACTGGCTCGTGCCGGTAAGGTGAGAGGTCAGACGCCT 119
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 81 AAAATGGGAAAGGTCCACGGTTCATTGGCTCGTGCCGGTAAGGTGAGAGGTCAGACACCT 140
Query 120 AAAGTGGCTAAACAGGACAAGAAGAAGAAGCCTCGTGGTCGTGCTCACAAGCGTCTGCAA 179
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 141 AAAGTGGCTAAGCAGGACAAGAAGAAGAAGCCTCGTGGTCGTGCTCATAAGCGTCTGCAA 200
Query 180 CACAACCGCCGTTTCGTCACCGCCGTTGTTGGTTTTGGCAAGAAGAGAGGACCAAACTCA 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 CACAACCGCCGTTTCGTCACCGCCGTTGTTGGTTTTGGCAAGAAGAGAGGACCAAACTCA 260
Query 240 TCAGAGAAGTAGACaaaaaaaaaaTGTTTTACTCTTT-CAGATTTTATGGAATGTTTTTG 298
||||||||||||| | || || ||||||| |||| |||||||||||| |||||||||
Sbjct 261 TCAGAGAAGTAGATAGAAGAAG---GTTTTACCCTTTTCAGATTTTATGGGATGTTTTTG 317
Query 299 ATATTGTGCCATTAGTTGGTACAAACTCATCAATATCCAAGTGGTTTAACTTTCGTTATC 358
|||||||| ||||||||||| |||||||||| ||||| |||||||||||| || ||||||
Sbjct 318 ATATTGTGTCATTAGTTGGTCCAAACTCATCGATATCAAAGTGGTTTAACCTTGGTTATC 377
Query 359 TACAAATCAGTGGATGTTATGTCAATGTTCTTGTCAATTTGATTTGTGTTTCTCCCCGGA 418
|||||||||||||||||| ||||||| |||||||||||||||||| ||||||||| | ||
Sbjct 378 TACAAATCAGTGGATGTTGTGTCAATTTTCTTGTCAATTTGATTTTTGTTTCTCCTCAGA 437
Query 419 TTAGACATAAGTTCTTGGATTATTG 443
|||||| |||||||||| |||||||
Sbjct 438 TTAGACTTAAGTTCTTGAATTATTG 462
> AT4G29390.1 | Symbols: | Ribosomal protein S30 family protein
| chr4:14464987-14465983 REVERSE LENGTH=495
Length=495
Score = 237 bits (128), Expect = 7e-62
Identities = 189/217 (87%), Gaps = 10/217 (5%)
Strand=Plus/Plus
Query 40 GAAGAAT-CTCTGTAATCTGAAAAATGGGAAAGGTCCACGGTTCAC-TGGCTCGTGCCGG 97
||||||| ||| |||| | || ||||| ||||| |||||||| | |||||||||||||
Sbjct 61 GAAGAATCCTC-GTAAAC--AATCATGGGTAAGGTACACGGTTC-CTTGGCTCGTGCCGG 116
Query 98 TAAGGTGAGAGGTCAGACGCCTAAAGTGGCTAAA-CAGGACAAGAAGAAGAAGCCTCGTG 156
|||||||||||||||||| || |||||||| ||| ||||| |||||||||||||| ||||
Sbjct 117 TAAGGTGAGAGGTCAGACACCGAAAGTGGC-AAAGCAGGATAAGAAGAAGAAGCCACGTG 175
Query 157 GTCGTGCTCACAAGCG-TCTGCAACACAACCGCCGTTTCGTCACCGCCGTTGTTGGTTTT 215
| ||||||||||| | | |||||||||| ||||||||||| |||||||||||||| |||
Sbjct 176 GCCGTGCTCACAAAAGGT-TGCAACACAATCGCCGTTTCGTAACCGCCGTTGTTGGATTT 234
Query 216 GGCAAGAAGAGAGGACCAAACTCATCAGAGAAGTAGA 252
||||||||||||||||| ||||| || ||||||||||
Sbjct 235 GGCAAGAAGAGAGGACCCAACTCTTCTGAGAAGTAGA 271
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21062186831
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5