BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg480498

Length=559
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G19730.1 | Symbols:  | Ribosomal L28e protein family | chr2:...   850    0.0  


> AT2G19730.1 | Symbols:  | Ribosomal L28e protein family | chr2:8511510-8513221 
FORWARD LENGTH=722
Length=722

 Score =  850 bits (460),  Expect = 0.0
 Identities = 529/562 (94%), Gaps = 6/562 (1%)
 Strand=Plus/Plus

Query  4    GCTCCGGCGCCACCATTAAAAACTATCTCTCCCTCTCTGCGAAATTTCACGGT---T-TT  59
            ||||||||||||||||||||| || ||  || || ||||||||||||||||||   | ||
Sbjct  1    GCTCCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGGTAGGTATT  60

Query  60   CGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAGAACAACAACTGTTT  119
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   TGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAGAACAACAACTGTTT  120

Query  120  CTTGGTGAAACAGTTCGGTAGAGGAAACTCTAAGGTTCTATTCAGCAAGGAGACCAACAA  179
            ||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct  121  CTTGGTGAAGCAGTTCGGTAGAGGAAACTCTAAGGTTCAATTCAGCAAGGAGACTAACAA  180

Query  180  TCTCGCCAACGTTCACTCCTACAAGCACTCTGGTCTTGCAAACAAAAAGACTGTGACTAT  239
             ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct  181  CCTCACCAACGTTCACTCTTACAAGCACTCTGGTCTTGCAAACAAAAAGACTGTGACCAT  240

Query  240  CCAGGCCGCTGACAAGGAACAAGCTGTTGTGCTTGCCACCACCAAGACCAAGAAGCAGAA  299
            |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct  241  CCAGGCCGCTGACAAGGACCAAGCTGTTGTGCTCGCCACCACCAAGACCAAGAAGCAGAA  300

Query  300  CAAGCCTAAGCTCTCTGTCAACAAGTCTATCCTTAAGAAGGAATTCCCCAGGATGTCAAA  359
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  301  CAAGCCTAAGCTCTCTGTCAACAAGTCTATCCTCAAGAAGGAATTCCCCAGGATGTCAAA  360

Query  360  GGCTGTTGCTAACCAGGTGGTTGACAACTACTACAGGCCAGACTTGAAGAAAGCTGCTCT  419
            ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||
Sbjct  361  GGCTGTTGCTAACCAGGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACT  420

Query  420  TGCTAGACTCAGTGTCATCAGCAAAGGTCTTAGGGTTGCTAAGTCCGGTGCCAAGCAAAG  479
            |||||||||||| | ||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct  421  TGCTAGACTCAGCGCCATCAGCAAAGGTCTCAGGGTTGCCAAGTCCGGTGCCAAGCAAAG  480

Query  480  AAACAGACAAGCTTAAGCTTCTTCTTTCACTATGTGTTTTTTG-GA-GTAAAAGATTTTG  537
            |||||||||||||||||||||||||||||| || ||||||||  || |||||||||||||
Sbjct  481  AAACAGACAAGCTTAAGCTTCTTCTTTCACAATCTGTTTTTTTTGAAGTAAAAGATTTTG  540

Query  538  TTGAACAGGTTTTATTTAAGTT  559
            ||||||||||||||||||||||
Sbjct  541  TTGAACAGGTTTTATTTAAGTT  562



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26825034498


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5