BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480500
Length=3212
Score E
Sequences producing significant alignments: (Bits) Value
AT2G19710.1 | Symbols: | Regulator of Vps4 activity in the MVB... 2313 0.0
> AT2G19710.1 | Symbols: | Regulator of Vps4 activity in the MVB
pathway protein | chr2:8506130-8510081 FORWARD LENGTH=3287
Length=3287
Score = 2313 bits (1252), Expect = 0.0
Identities = 1565/1706 (92%), Gaps = 62/1706 (4%)
Strand=Plus/Plus
Query 35 CCCCGCGAAAAATTCCATTCTTCAGATCATAGATTTGCGTCTGATCT-TCATAACAAGC- 92
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
Sbjct 65 CCCCGCGAAAAATTCCATTCTTCAGATCATAGATTTGCGTCTGATCTAT-ATAACAAACA 123
Query 93 -----CaaaaaaaTCT-AGC--tt-tt-t---ttttA-CCCTGATTCGAt---ttt---- 131
||||||| || | | || || | ||||| ||||||||||| |||
Sbjct 124 AAAAAAAAAAAAAACTAATCTATTATTCTAGCTTTTATACCTGATTCGATCAATTTCCGA 183
Query 132 --ttttttGTGATAAATTTCGTGTCCATGAAGAAGGTTCTTCAACGAGGTTTTAAGCCTG 189
|||||| || |||||||||||| |||||||||||| |||||| |||||||||||||||
Sbjct 184 GGTTTTTTTTGCTAAATTTCGTGTACATGAAGAAGGTGCTTCAAAGAGGTTTTAAGCCTG 243
Query 190 CTAAATGCAAAACAGCTCTGCAAATGGCGAATTCACGCCTGAAGATACTCAAGAACAAAA 249
| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 244 CAAAATGCAAAACAGCTTTGCAAATGGCGAATTCACGCCTGAAGATACTCAAGAACAAGA 303
Query 250 AGGAGATTCAGATTAAACAGCTGAGGAGAGAATTAGCTCAATTGCTCGAATCCGGAC--A 307
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 304 AGGAGATTCAGATTAAACAGCTGAGGAGAGAATTAGCTCAATTGCTCGAATCTGGACAAA 363
Query 308 -CCCTACTGCTAGAATTCGGGTGGAACATGTGGTTAGGGAAGAGAAGACAGTGGCTGCTT 366
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 364 CCCCTACTGCTAGGATTCGGGTGGAACATGTTGTTAGGGAAGAGAAGACAGTGGCGGCTT 423
Query 367 ATGAGCTCATTGGAATATATTGTGAACTTCTTGTTGTTCGTTTGGGTGTTATTGAGTCAC 426
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||
Sbjct 424 ATGAGCTCATTGGAATATACTGTGAACTTCTTGTTGTTCGTTTAGGTGTTATTGAATCAC 483
Query 427 AGAAAAACTGCCCCATTGATCTGAAAGAAGCTGTCACAAGTGTCTTGTTTGCTTCACAGA 486
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 484 AGAAAAATTGCCCCATTGATCTGAAAGAAGCTGTCACAAGTGTCTTGTTTGCTTCCCAGA 543
Query 487 GGTTATCAGATGTTCCAGAGCTCTCAGAAATCTTTAAGCAATTCACAACCAAGTATGGGA 546
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 544 GGTTATCAGATGTTCCAGAGCTCTCAGAGATCTTTAAGCAATTCACAACCAAGTATGGCA 603
Query 547 AGGATTTTTCTACGGCGGCTATTGAGTTGCGTCCTGATTCTGGTGTGAGTCGTCTGTTGG 606
||||||||||||| | ||| ||||||||||||| ||||||||||| ||||| |||||||
Sbjct 604 AGGATTTTTCTACCTCTGCTGTTGAGTTGCGTCCGGATTCTGGTGTTAGTCGCCTGTTGG 663
Query 607 TGGAAAAATTGTCTGCCAAAGCCCCTGATGGTCCAACAAAGGTCAAAATTTTGATGGCAA 666
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 TCGAAAAATTGTCTGCCAAAGCCCCTGATGGTCCAACAAAGGTCAAAATTTTGATGGCAA 723
Query 667 TCGCTGAGGAACATAATGTCGTCTGGGAGGCGCAATCTTTCGTTGAATCAGATCCAAAAG 726
|||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 724 TCGCTGAGGAGCATAATGTCGTCTGGGAGGCACAATCTTTCGTCGAATCAGATCCAAAAG 783
Query 727 ATACTGAGTTGTTGAGTGGAGCAAGCTCGTTTCAGCCAGCGAGTAGTATGAACATGGATT 786
|||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 784 ATACCGAGTTGTTGAATGGAGCAAACTCGTTTCAGCCAGCGAGTAGTATGAACATGGATT 843
Query 787 CATCTATAAACTCAAACAAGGAACAGCCTCCAAACGTCCCA-GCTCCAGCTACTGTCAAT 845
||||||||||||| ||||||||||||||||||||| | ||| ||||||||||||||||||
Sbjct 844 CATCTATAAACTCGAACAAGGAACAGCCTCCAAACAT-CCATGCTCCAGCTACTGTCAAT 902
Query 846 GCTTATCATGGATCAAGTGAAAGAAATCATTTCCCAGAGAACTCTTATGCAAATGGGGGA 905
||| |||||||||||||||||||| |||||| |||||||||||||||||||||||| |||
Sbjct 903 GCTCATCATGGATCAAGTGAAAGACATCATTCCCCAGAGAACTCTTATGCAAATGGTGGA 962
Query 906 AGATCTTCAAGCCGTAGCAATAATGTTACTTCTGGGAAGGCTGATGACTACTATCA-TCC 964
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 963 AGATCTTCAAGCCGTAGTAATAATGTTACTTCTGGGAAGGCTGATGACTACTATCATTCG 1022
Query 965 AAATGCGAGACCTTCTCGACCTAGGCCTGATGAAGGAGAATGTAGAAATCCAAATCATGG 1024
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 AAA-GCGAGACCTTCTCGATCTAGGCCTGATGAAGGAGAATGTAGAAATCCAAATCATGG 1081
Query 1025 CTATGCA-AATTCATCTTCAAGAACTAAGAATAAGCGGGAAACAGAATTTGTTAG-TTCC 1082
||||| | |||||||||||||||| |||| | || ||||| ||||||||||| | ||||
Sbjct 1082 CTATG-AGAATTCATCTTCAAGAAATAAGCAGAAATGGGAACCAGAATTTGTT-GATTCC 1139
Query 1083 ACAGATGCTGC-TGAAGCTGCCGCTGAAGCTGCTGAAAGAGCAAGTTTCGCTGCTAGAGC 1141
||||| ||||| | ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1140 ACAGACGCTGCACG-TGCTGCTGCTGAAGCTGCTGAAAGAGCAAGTTTCGCTGCTAGAGC 1198
Query 1142 AGCTGCCGAACTTTCGAACAAAGAAAGGATGATGAGGCAGGATTCAACAGAGTCGCATAT 1201
|||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||
Sbjct 1199 AGCTGCCGAACTTTCGAACAAAGAAAGGATGACGAGGCAGGATTCCACACAGTCGCATAT 1258
Query 1202 ATCCTCTGCATCTGTAAATCTCAGAAACGAGCCTTCACATCGACGTAACCGATCGAATGC 1261
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1259 ATCCTCTGCATCTGTAAATCTCAGAAACGAGCCTTCACATCGACGTGACAGATCGAATGC 1318
Query 1262 ACAAAGTGAAAGTTATTCTGAAGATCATTTTTCGCCTAGACGAAATGTT-GGAATGCAGT 1320
|||||| ||||||| ||||||||||||| |||||||| ||||||||||| ||| ||||||
Sbjct 1319 ACAAAGAGAAAGTTTTTCTGAAGATCATGTTTCGCCTCGACGAAATGTTAGGA-TGCAGT 1377
Query 1321 ATGAAGATATGGACAGAACCCGGCAAGATAGATATGATAAGGCAGAGGAATCTGAGATTC 1380
|||||||||||||||||||| ||||||| |||||||||| |||||| | | ||||||
Sbjct 1378 ATGAAGATATGGACAGAACCAGGCAAGACAGATATGATAGGGCAGA--A--C--AGATTC 1431
Query 1381 CTCCTGTAGATCAGTCATCAGGAAGACATTCCCTGGATAACTCGAGAAATAATGGTTCCT 1440
|||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 1432 CTCCTGTAGATCAGCCATCAGGAAGACATTCCGTGGATAACTCGAGAAATAACGGTTCCT 1491
Query 1441 TTGGTAAAAAAGGTAGAGAGAAGCAGCCAAGTCAGGATGAGACAGATTTAAATGTTGGTT 1500
|||||| | ||||| | ||||||||| ||||||||||| ||| ||||||||||||
Sbjct 1492 TTGGTA-----G--AGAGA-A-GCAGCCAAGCCAGGATGAGACGGATATAAATGTTGGTT 1542
Query 1501 ACTCAGAAGATGTTCACCTCAGGAAGCAGTCAAGCCGGGCTTCATCACATTCACATTCAC 1560
|||||||||||||||||||||||||||||||||| |||| || ||| | |||||||||
Sbjct 1543 ACTCAGAAGATGTTCACCTCAGGAAGCAGTCAAGTCGGG-TT--TCA--T-CACATTCAC 1596
Query 1561 ATTCAAGCAATTATTCTGATGAGAATGACCTTGCCTCAGATTATATGAAGTCACCGAGCA 1620
||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||
Sbjct 1597 ATTCAAGCAATTATTCTGATGAGAATGACCTTGGCTCAGATTTTATGAAGTCACCAAGCA 1656
Query 1621 TCGTGGAGGAAAACATATTTGCCACTGAATATGATCACCAATCTCAGAGCAGCTTTAAAG 1680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1657 TCGTGGAGGAAAACATATTTGCCACTGAATATGATCACCAATCTCAGAGCAGCTTTAAAG 1716
Query 1681 ATATAGATTCCCATGATCATGGACAT 1706
||||||||||||||||||||||||||
Sbjct 1717 ATATAGATTCCCATGATCATGGACAT 1742
Score = 2043 bits (1106), Expect = 0.0
Identities = 1397/1532 (91%), Gaps = 41/1532 (3%)
Strand=Plus/Plus
Query 1702 GAC-ATAGTTCATTTTTTGATCAACCTAAATTTGATGCGGAAGATAATCATTAT---GAT 1757
||| |||||||||||||| |||||||||||||| |||||||||||||||||||| |||
Sbjct 1776 GACTATAGTTCATTTTTTTATCAACCTAAATTTCATGCGGAAGATAATCATTATCAAGAT 1835
Query 1758 GAAATTG---A---TGTAGGATTCTCATTGCTTGGCAGCAAAACATCTGCTTCAGCGGCT 1811
||||||| | |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1836 GAAATTGATCATGGTGTAGGATTCTCATTGCTTGGCAGCAAAACATCTGCTTCAGCTGCT 1895
Query 1812 TCGTGGAGCTTCAAAGAAGATCTTAGTAAGTCCTCATATGGAAAAAACAGCAGCTCGAGC 1871
|||||||||||||||| ||||| |||||||||| | |||||||| ||||||||||||||
Sbjct 1896 TCGTGGAGCTTCAAAGGAGATCATAGTAAGTCC-C--ATGGAAAACACAGCAGCTCGAGC 1952
Query 1872 TCACAAGTTTTCCAAGAGAACCTAAGTTCCCCATTATTTGATGATGTCTCTACAAGTCCT 1931
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1953 TCACAAGTTTTCCAAGAGAACCCAAGTTCCCGATTATTTGATGATGTCTCTACAAGTCCT 2012
Query 1932 CCTGCATCTTACCACGAGCCTGACCCACATGCCAAGTTTGACAATTATGGTCCAAATTCA 1991
|| || |||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2013 CCGGCTTCTTACCATGAGCCTGACCCACATGCCAAGTTTGACAATTATGGTCCAAACTCA 2072
Query 1992 GAAAGCGACGGCGATCAGCCAAGGCATAGAGGCAAAGTTTCTGGAGATGTACATGAGAAG 2051
|||||||| || |||||||| ||||| |||||||||||||||||||||||||| |
Sbjct 2073 GAAAGCGATGGTGATCAGCC----TATAGA--CAAAGTTTCTGGAGATGTACATGAGAGG 2126
Query 2052 GGGATTCTGACATCTGATCGATCTCAGAAATTTAAAGTCTCTGATTCTGAC-GGACAGGA 2110
|||| ||||||||||||||||||||| |||||||||||||||||||||| | ||||| ||
Sbjct 2127 GGGAATCTGACATCTGATCGATCTCACAAATTTAAAGTCTCTGATTCTG-CTGGACACGA 2185
Query 2111 ATTTTTCCCTTTAGACACAGAGGAACACAAAGATAATTTGAGGAAACAGGAAGAATCAGA 2170
| ||||||||||||||||||| ||||||| |||||||| |||| || ||||||||||||
Sbjct 2186 AGTTTTCCCTTTAGACACAGAAGAACACACAGATAATTCAAGGACACGGGAAGAATCAGA 2245
Query 2171 TTCAGAGTCAGAGCCTCAGCTTGGTCTGAGGCTTGGAACTTTGGGCGGTGGATTTAGGAA 2230
|||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 2246 TTCAGACTCAGAGCCTCAGCTTGGTCTGAGGCTTGGAGCTTTGGCCGGTGGATTTAGGAA 2305
Query 2231 CAAAAAGACACTCCCACCCTACACAATGAGTTTGGCATCGTCCAAGTCTGAAAAGAAATA 2290
||||||||||||||||||||||| |||||||| ||||||||||||| |||||||| ||||
Sbjct 2306 CAAAAAGACACTCCCACCCTACAGAATGAGTTCGGCATCGTCCAAGGCTGAAAAGGAATA 2365
Query 2291 TATCCAAACCGATGATTTTGGTCAGTCTAGCAGAAAAGATCTTTACAGTAAGAAAGCAAG 2350
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2366 TATCCAAATCGATGATTTTGGTCAGTCTAGCAGAAAAGATCTTTACAGTAAGAAAGCAAG 2425
Query 2351 CAACACCGAGATGAGACCTAGTTTTATGCCTCCTCATCCATCTTCTAGTGATGAAGACGA 2410
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2426 CAACACCGAGACAAGACCAAGTTTTATGCCTCCTCATCCATCTTCTAGTGATGAAGACGA 2485
Query 2411 CTCAGACATGCAACTTCCAGTAAGAACAAAAACAAAATCCGATTCCTTATTTAGTCATGC 2470
|||||||||||||| ||||| ||||||| |||||||||| |||||||||| ||||||| |
Sbjct 2486 CTCAGACATGCAACATCCAGGAAGAACAGAAACAAAATCAGATTCCTTATATAGTCATTC 2545
Query 2471 CCGTGTCAACCTTGAAGACTCGGATGAAGAAAAACTCTCAACTCGATCTTCTTCAAGAAG 2530
||||||||||| ||| |||||||| |||||||||||| |||| || |||||||||||||
Sbjct 2546 CCGTGTCAACCATGATGACTCGGAGGAAGAAAAACTCCCAACACGGTCTTCTTCAAGAAT 2605
Query 2531 TCAAGAGAGGAGTCGTAAGCCATCAACGGGAATGAGAGATCACAAGAGAACAAACTTCAA 2590
|||||||||||||| |||||||||||| ||||| || | ||| |||||||| ||||||||
Sbjct 2606 TCAAGAGAGGAGTCATAAGCCATCAACAGGAATAAGGGTTCAGAAGAGAACGAACTTCAA 2665
Query 2591 GACGCCAGTTTCATCATCGTCTGAAGATGAGGAAGAAGTCGAAAGAGAGGCTGCACACAT 2650
|| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2666 GATGCCAGTTTCAGCATCGTCTGAAGATGAGGAAGAAGTCGAAAGAGAGGCTGCACGCAT 2725
Query 2651 CAATGCCAAGCCAAATAAAACAACCGGGTACGGGTTCTCTCTAAGGACAAAGGGCCAATC 2710
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2726 CAATGCCAAGCCAAATAAAACAACCGGGTATGGGTTCTCTCTAAGGACAAAGGGCCAATC 2785
Query 2711 GAAAGCTTATGAGAAACATTCTTTACCAGTGACAACGAAGAAAACCGACAAAGAGTCTCA 2770
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2786 GAAAGCTAATGAGAAACATTCATTACCAGTGACAACGAAGAAAACCGACAAAGAGTCTCA 2845
Query 2771 TGATCAGCCATCTCCAAGGCACAAGACAGTAACTTCAAGCCCTGTTTCACAAAGTGTAAA 2830
||||||||||||||||||| ||| | ||||||| |||| |||| |||||| ||||||
Sbjct 2846 TGATCAGCCATCTCCAAGG-ACA-G----TAACTTCCAGCCATGTTCCACAAACTGTAAA 2899
Query 2831 ATCACCCGATCCAGAAACCCCATC-A---AG-GG-AGAGAGCTAGTCACGTTCATCCCAA 2884
||||||||||||||| |||||||| | || || ||||||||||||| ||||| |||||
Sbjct 2900 ATCACCCGATCCAGACACCCCATCCAGGGAGAGGGAGAGAGCTAGTCATGTTCACCCCAA 2959
Query 2885 CCTCCCAGAATATGACGATATCTTTGCAAGGCTCGGGGCCCTTCGTGCTCCTAATCGACG 2944
|||||||||||||||||||||||||||||||||||| || ||||||||||| | ||||||
Sbjct 2960 CCTCCCAGAATATGACGATATCTTTGCAAGGCTCGGAGCGCTTCGTGCTCCCAGTCGACG 3019
Query 2945 CTGAGTATGCTCATCTTGTCCGTCTGTTCATATATTTATTCTTTGC-CACAGAGACCAGT 3003
|||| | |||||||||||||| ||||||||||||| |||||||| | ||| || | ||||
Sbjct 3020 CTGAATCTGCTCATCTTGTCCTTCTGTTCATATATATATTCTTT-CACACGGAAAACAGT 3078
Query 3004 CCCCCTCATTCTTTACTCTGACTGAATTTGATATTCTTACACATTATACATATTGAAGCA 3063
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
Sbjct 3079 TCCCCTCATTCTTTACTCTGACTGAATTTGATATTCTTACACGTTATACAGATTGAAGTA 3138
Query 3064 GTGGTGTGATTCTGCTTGGTCGTGATTGGTGTTCCTTGTCTATTTTATTTTTTGGTGTGG 3123
||||||||||||||||||||| |||||||| |||||||||| |||| ||||||| |||||
Sbjct 3139 GTGGTGTGATTCTGCTTGGTCTTGATTGGTTTTCCTTGTCTTTTTT-TTTTTTG-TGTGG 3196
Query 3124 ATACATAGAATAGGAAATAACTATTTGCGAAGA-A--GATTTTTATAATAACATTCGAAA 3180
||| | ||||||| ||||||||||||||||||| | |||||| |||||| |||||||||
Sbjct 3197 ATAAACAGAATAGAAAATAACTATTTGCGAAGAGAAAGATTTT-ATAATACCATTCGAAA 3255
Query 3181 TGTTGTCACAATAGAAATGAATTTTGTTCTCT 3212
|||||||| ||||||||| |||||||||||||
Sbjct 3256 TGTTGTCATAATAGAAATAAATTTTGTTCTCT 3287
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 159781713455
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5