BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480501
Length=742
Score E
Sequences producing significant alignments: (Bits) Value
AT2G19690.2 | Symbols: PLA2-BETA | phospholipase A2-beta | chr2... 771 0.0
AT4G29460.1 | Symbols: | Phospholipase A2 family protein | chr... 226 3e-58
> AT2G19690.2 | Symbols: PLA2-BETA | phospholipase A2-beta | chr2:8503260-8504821
FORWARD LENGTH=699
Length=699
Score = 771 bits (417), Expect = 0.0
Identities = 463/485 (95%), Gaps = 4/485 (1%)
Strand=Plus/Plus
Query 44 GGAA-CTTTAGCCACAA-TTCGAAACCTTAGCGAAGAAGACAACAGCGATTCACGAGACG 101
|||| |||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1 GGAATCTTTAGCCACAATTTCGAAACCTTAGCGAAGAAGACAACAACGATTTACGAGACG 60
Query 102 ACGACGATGATGATTCGCACTTCTTTGATGCGTTTCGCCGCAGCTTTCTTCGTCGTTGTC 161
|||||||||||| |||||||||| |||||||||||||| ||||||||||||| | |||||
Sbjct 61 ACGACGATGATGTTTCGCACTTCATTGATGCGTTTCGCGGCAGCTTTCTTCGCCATTGTC 120
Query 162 TTCGTCGTCCTCGTCGGTGTCGTTCGCAGTGAGGAGTGTACAAGAAAGTGCATTGCACAG 221
|||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 121 TTCGTCGTTCTCGTCGGTGTCGCTCGCAGTGAGGAGTGTACAAGAACTTGCATTGCACAG 180
Query 222 AATTGTGACACTCTTTCTATTCGATATGGCAAGTATTGTGGGATTGGACATTCTGGATGT 281
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 181 AATTGTGACACTCTTTCTATTCGATATGGGAAGTATTGTGGGATTGGACATTCTGGTTGT 240
Query 282 CCTGGTGAGGAGCCTTGTGATGATCTTGATGCTTGTTGTATGGTCCATGA-CAGTTGTGT 340
|||||||||||||||||||||||||||||||||||||||| | ||||||| || ||||||
Sbjct 241 CCTGGTGAGGAGCCTTGTGATGATCTTGATGCTTGTTGTAAGATCCATGACCA-TTGTGT 299
Query 341 TGAGTTAAACGGTATGACTAACATAAGCTGTCATAAGAAGTTCCAGCGATGCGTAAACAG 400
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 300 TGAGTTAAACGGTATGACTAACATAAGCTGCCATAAGAAGTTCCAGCGATGCGTAAACAG 359
Query 401 GCTAAGCAAAGCGATAAAACAGTCTAAAAACAAAAAGGTCGGCTTTTCCACAAAGTGCCC 460
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 360 GCTAAGCAAAGCGATAAAACAGTCTAAAAACAAAAAGGTTGGATTTTCCACAAAGTGCCC 419
Query 461 TTATTCAGTAGTCATACCTACGGTGAATCAAGGAATGGATATTGGAATCTTATTCAGTCA 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TTATTCAGTAGTCATACCTACGGTGAATCAAGGAATGGATATTGGAATCTTATTCAGTCA 479
Query 521 ATTAG 525
|||||
Sbjct 480 ATTAG 484
Score = 191 bits (103), Expect = 9e-48
Identities = 123/133 (92%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 610 AGCTTACCTCAGAtttttttttACTGACTGGTGATTACCTTAATTATTGCAATTGCAAGT 669
|||||||| |||| ||| ||||||| || ||||||||||| |||||||||||||||||
Sbjct 483 AGCTTACCACAGAAAATTTGTTACTGATTGATGATTACCTTATTTATTGCAATTGCAAGT 542
Query 670 CGCTGATAGATTACATGTATGAAGCGATGGCACTACGTGAATCTGTACTATACACAATGC 729
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 543 TGCTGATAGATTACATGTATGAAGCGATGGTACTACGTGAATCTGTACTATACACAATGC 602
Query 730 AAGTTTTGATCGG 742
|||||||||||||
Sbjct 603 AAGTTTTGATCGG 615
> AT4G29460.1 | Symbols: | Phospholipase A2 family protein | chr4:14482875-14483936
REVERSE LENGTH=761
Length=761
Score = 226 bits (122), Expect = 3e-58
Identities = 300/382 (79%), Gaps = 28/382 (7%)
Strand=Plus/Plus
Query 169 TCCTCGTCGGTGTCGTTCGCAGTGAGGAG-TGTACAAG-AA-A-GTGCATTGCACAGAAT 224
||||| ||| |||||| |||| ||||| || | || || | ||||||||||||||
Sbjct 59 TCCTCCTCGCCGTCGTTAGCAGCCAGGAGAAGTGC-AGCAACACCTGCATTGCACAGAAC 117
Query 225 TGTGACACTCTTTCTATTCGATATGGCAAGTATTGTGGGATTGG--ACATTCTGGATGTC 282
|| ||| |||| |||||| ||||| |||||||||||||| || || || ||||||||
Sbjct 118 TGCAACAGTCTTGGTATTCGCTATGGGAAGTATTGTGGGATAGGTTAC-TT-TGGATGTC 175
Query 283 CTGGTGAG-GAGCCTTGTGATGATCTTGATGCTTGTTGTATGG-TCCATGACAGTTGTGT 340
|||| ||| | |||||||||||||||||||||||||||||| || |||||| ||||||
Sbjct 176 CTGGAGAGCCA-CCTTGTGATGATCTTGATGCTTGTTGTATGACTC-ATGACAATTGTGT 233
Query 341 TGAGTTAAACGGTATGACTAACAT-AAGCTGTCATAAGAAGTTCCAGCGATGCGTAAACA 399
||| ||||| ||||||||| || | || ||| || ||| ||||| | || ||||||||||
Sbjct 234 TGATTTAAAAGGTATGACTTACGTTAA-CTGCCACAAGCAGTTCAAACGTTGCGTAAACA 292
Query 400 GGCTAAGCAAAGCGATAAAACAGTCTAAAA-ACAAAAAGGTCGGCTTTTCCACA-AAGTG 457
|||||||||| | || ||||| ||||| | |||| | | || || |||||| || ||
Sbjct 293 AGCTAAGCAAATCTATTAAACACTCTAACGGAGAAAA-GATTGGATTCTCCACACAA-TG 350
Query 458 CCCTTATTC-AGTAGTCATACCTACGGTGAATCAA-GGAATGGAT-ATTGGAATCTTATT 514
||||||||| | |||| ||||| || ||| |||| ||||||||| | || || || ||
Sbjct 351 CCCTTATTCGA-TAGTGATACCAACCGTGT-TCAATGGAATGGATTAC-GGCATTTTCTT 407
Query 515 CAGTCA-ATTAGGTAATGATAT 535
|||| || ||||||| ||||
Sbjct 408 CAGTGGGAT-AGGTAAT-ATAT 427
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36017883399
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5