BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480503
Length=599
Score E
Sequences producing significant alignments: (Bits) Value
AT2G19680.1 | Symbols: | Mitochondrial ATP synthase subunit G ... 922 0.0
AT4G29480.1 | Symbols: | Mitochondrial ATP synthase subunit G ... 385 3e-106
AT4G26210.1 | Symbols: | Mitochondrial ATP synthase subunit G ... 257 7e-68
> AT2G19680.1 | Symbols: | Mitochondrial ATP synthase subunit
G protein | chr2:8501325-8502831 FORWARD LENGTH=645
Length=645
Score = 922 bits (499), Expect = 0.0
Identities = 568/600 (95%), Gaps = 10/600 (2%)
Strand=Plus/Plus
Query 4 AAGGATTTTTGATATAGAAATATGGCATCAAAATTGGTACAACTTCAATCAAAGGCATGT 63
||||| ||||| ||| |||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 48 AAGGA-TTTTGGTATTGAAAAATGGCATCAAAATTGGTTCAACTTCAATCAAAGGCATGT 106
Query 64 CAGGCTTCAAAGTTTGTGGCCAAGCATGGGAATTCTTACTATAAGCAATTGTTGGAGCAG 123
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 107 CAGGCTTCAAAGTTTGTGGCCAAGCATGGGAATTCGTACTACAAGCAATTGTTGGAGCAG 166
Query 124 AACAAGCAATTCGTTCAAGAGCCTGCAACTGTAGAGAAGTGCAGTGAATTGTCTAAGCAA 183
|||||||||| | | ||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 167 AACAAGCAATACATCCAAGAGCCTGCAACTATAGAGAAGTGCAGTGAATTGTCTAAACAA 226
Query 184 TTGCTCTACACTCGTCTTGCTAGCATTCCCGGGCGTTATGAAACATTTTGGAAAGAAGTA 243
||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||
Sbjct 227 TTGCTCTACACTCGTCTTGCTAGCATTCCCGGGCGCTACGAAACATTTAGGAAAGAAGTA 286
Query 244 GACTATGCAAAGAACTTATTGAAGAACAGAGCGAATCTGAAGGTGGAAGATGCAGGAATC 303
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 287 GACTACGCAAAGAACTTATTGAAGAACAGAGCGAATCTGAAGGTGGAAGATGCAGGAATC 346
Query 304 GCTGCATTGTTTGGCTTAGAATGCTTTGCTTGGTTTTGCGCAGGTGAAATCGTCGGCAGA 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 347 GCTGCATTGTTTGGCTTAGAATGCTTTGCTTGGTTTTGCGCAGGTGAAATCGTCGGCAGA 406
Query 364 GGTTTCACTTTCACCGGCTACTACCCTTGAAATGGAGACAACATACAACAATGTCGCCGG 423
|| |||||||||||||||||||||||||||||| ||||||||| ||||| | ||||||||
Sbjct 407 GGATTCACTTTCACCGGCTACTACCCTTGAAATTGAGACAACAAACAACCAGGTCGCCGG 466
Query 424 AATATTCTTCCTGACGCTTGTAACTCCCTCCATATGATTCCTCACT-GAACTATATA--C 480
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 467 AATATTCTTCCTGACGCTTGTAACTCCCTCCATATGATTCCTCACTTGAACTATATATAC 526
Query 481 TTCCTCGAATCCATTTATATTTTCAGTATTTTTCCTGAAACC-AATGTTTTGGAGCTAAG 539
||||||||||||||||||||||||||| ||||||||||||| || || |||||||||||
Sbjct 527 TTCCTCGAATCCATTTATATTTTCAGT-TTTTTCCTGAAACAGAA-GTGTTGGAGCTAAG 584
Query 540 GGaaaaaaaaaaaCCATTTTGGTAAAGCTCTTAATAAGTTGAGAAAAATGCATTTGATAC 599
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 GGAAAAAAAAA--C-ATTTTGGTAAAGCTCTTAATAAGTTGAGAAAAATGCATTTGATAC 641
> AT4G29480.1 | Symbols: | Mitochondrial ATP synthase subunit
G protein | chr4:14486041-14487777 REVERSE LENGTH=725
Length=725
Score = 385 bits (208), Expect = 3e-106
Identities = 322/376 (86%), Gaps = 12/376 (3%)
Strand=Plus/Plus
Query 25 ATGGCATCAAAATTGGTACAACTTCAATCAAAGGCATGTCAGGCTTCAAAGTTTGTGGCC 84
|||||||| || ||| ||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 133 ATGGCATCGAAGTTGATACAAGTTCAATCAAAGGCATGTGAGGCTTCAAAGTTTGTGGCT 192
Query 85 AAGCATGGGAA-TTCTTACTATAAG-CAATTGTTGGAGCAGAACAAGCAAT-TCGTTCAA 141
|||||| |||| ||| ||||| || || |||||||| |||||||||| | | | ||
Sbjct 193 AAGCAT-GGAACTTCCTACTA-CAGACAGCTGTTGGAGAAGAACAAGCAGTAT-ATCCAG 249
Query 142 GAGCCTGCAACTGTAGAGAAGTG-CAGTGAATTGTCTAAGCAATTGCTCTACACTCGTCT 200
|| ||||| ||||| |||||||| || || ||||||||||| ||||||||||| |||||
Sbjct 250 GAACCTGCCACTGTTGAGAAGTGCCA-AGAGTTGTCTAAGCAGTTGCTCTACACCCGTCT 308
Query 201 TGCTAGCATTCCCGGGCGTTATGAAACATTTTGGAAAGAAGTAGACTATGCAAAGAACTT 260
||||||||||||||| || |||||||| || ||||| ||||||||||| ||||||||| |
Sbjct 309 TGCTAGCATTCCCGGACGCTATGAAACCTTCTGGAAGGAAGTAGACTACGCAAAGAACCT 368
Query 261 ATTGAAGAACAGA-GCGAATCTGAAGGTGGAAGATGCAGGAATCGCTGCATTGTTTGG-C 318
|| |||||||||| || ||||||||| ||||||||||||||||||||||||||||| |
Sbjct 369 ATGGAAGAACAGATCCG-GTCTGAAGGTAGAAGATGCAGGAATCGCTGCATTGTTTGGTC 427
Query 319 TTAGAATGCTTTGCTTGGTTTTGCGCAGGTGAAATCGTCGGCAGAGGTTTCACTTTCACC 378
| ||||||||||| |||| ||||||||||||||||| ||||||||| ||||| |||||
Sbjct 428 TC-GAATGCTTTGCATGGTATTGCGCAGGTGAAATCGCCGGCAGAGGATTCACCTTCACA 486
Query 379 GGCTACTACCCTTGAA 394
||||| ||||| ||||
Sbjct 487 GGCTATTACCCATGAA 502
> AT4G26210.1 | Symbols: | Mitochondrial ATP synthase subunit
G protein | chr4:13281937-13283402 FORWARD LENGTH=761
Length=761
Score = 257 bits (139), Expect = 7e-68
Identities = 303/380 (80%), Gaps = 20/380 (5%)
Strand=Plus/Plus
Query 25 ATGGCATCAAAATTGGTACAACTT-CAATCAAAGGCATGTCAGGCTTCAAAGTTTGTGGC 83
||||||||||| ||| ||||| || |||| ||||||||| | || ||||||||||| |
Sbjct 109 ATGGCATCAAAGTTGCTACAA-TTGAAATCCAAGGCATGTGAAGCATCAAAGTTTGTTTC 167
Query 84 CAAGCATGGGAA-TTCTTACTATAAGCAATTGTTGGAGCAGAACAAGCAAT-TCGT-T-C 139
||||||| |||| ||||||| || || ||| |||| |||||||| || | | | |
Sbjct 168 CAAGCAT-GGAACAACTTACTACAAACAGTTGCTGGATAAGAACAAG--ATGT-ATATCC 223
Query 140 AAGAGCCTGCAACTGTAGAGAAGTGCAGTGAATTGTCTAAGCA-ATTGCTCTACACTCGT 198
| ||||| || ||| ||||||| |||| ||||||||||||||| || ||||||||||||
Sbjct 224 AGGAGCCAGCTACTATAGAGAAATGCAATGAATTGTCTAAGCAGCTT-CTCTACACTCGT 282
Query 199 CTTGCTAGCATTCCCGGGCGTTATGAAACATTTTGGAAAGAAGTAGACT-ATGCAAAGAA 257
|||||||||||||| ||||||| ||| |||||||||| ||||| | | | | |||
Sbjct 283 CTTGCTAGCATTCCTGGGCGTTCTGAGTCATTTTGGAAGGAAGT-CAATCACGTGAAGGG 341
Query 258 CTTATTGAAGAA-CAGAGCGAATCTGAAGGTGGAAGATGCAGGAATCGCTGCA-TTGTTT 315
|||| |||||| | | ||| || ||||||| |||||||| ||||| |||||| || |||
Sbjct 342 TTTATGGAAGAATC-GGGCGGATTTGAAGGTTGAAGATGCTGGAATAGCTGCACTT-TTT 399
Query 316 GGCT-TAGAATGCTTTGCTTGGTTTTGCGCAGGTGAAATCGTCGGCAGAGGTTTCACTTT 374
|| | | ||||||||||| |||| || ||||| || || || || || || ||||||||
Sbjct 400 GG-TCTGGAATGCTTTGCGTGGTACTGTGCAGGAGAGATTGTAGGAAGGGGCTTCACTTT 458
Query 375 CACCGGCTACTACCCTTGAA 394
||||||||||||||||||||
Sbjct 459 CACCGGCTACTACCCTTGAA 478
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28834400378
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5