BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480507
Length=627
Score E
Sequences producing significant alignments: (Bits) Value
AT2G19630.1 | Symbols: | F-box and associated interaction doma... 276 2e-73
AT2G31470.1 | Symbols: DOR | F-box and associated interaction d... 87.9 1e-16
> AT2G19630.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr2:8490217-8491110 REVERSE LENGTH=894
Length=894
Score = 276 bits (149), Expect = 2e-73
Identities = 313/385 (81%), Gaps = 39/385 (10%)
Strand=Plus/Plus
Query 125 TTTGCTTTGATGTCAAGTCTGAGGAGTTTAGATTAATTATTGGAGCAATGTATCATGGAT 184
|||||||||| |||| |||||||||||||||||| ||||| |||||| || |||||||||
Sbjct 458 TTTGCTTTGACGTCAGGTCTGAGGAGTTTAGATTTATTATCGGAGCACTGCATCATGGAT 517
Query 185 TTCTAATAAACTACAATGAGAAACTAGGTTTGTA--T---G---ACA-TTTCTTCTGTCC 235
||| ||||||||||||| ||||||| ||||||| | | ||| ||| ||| ||
Sbjct 518 CTCTCATAAACTACAATGGGAAACTAAGTTTGTATCTGCCGTCAACAGTTTATTC---CC 574
Query 236 G-TTT--TGGAGTAACAACAAGTATTGAATTGTGGGTT-TTAGAAGATGCCGAAAA-ACA 290
| ||| |||||||| || ||||||| ||||||||||| || ||||||||| |||| ||
Sbjct 575 GTTTTAATGGAGTAATAAGAAGTATTAAATTGTGGGTTCTT-GAAGATGCC-AAAAGGCA 632
Query 291 AGAATGGTC-GAAGCATACATACCTATTTCCTGCGATGTTGCATGGTATGATGAGAACCA 349
||||||||| | ||||||||||| |||| ||||| | |||||| ||| |||| |||||
Sbjct 633 AGAATGGTCTG-AGCATACATACATATTGCCTGC-A--ATGCATGATATAATGAAAACCA 688
Query 350 CCGATTTAC-----G-T----TG--T---ACAAAGGAATTTGTGTTCCATTTGGTAGAAG 394
| ||||||| | | || | |||||||||||||| ||| | | || |||
Sbjct 689 CAGATTTACGTTGTGTTGGAATGACTCAGACAAAGGAATTTGTCTTCTGGTCGATAAAAG 748
Query 395 GTAGGCCTTTCTACGTTTTCTACTACAATATCGAGAGAAACACAATCAAAAAGGTTGAAA 454
||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 749 GTATGCGTTTCTACGTTTTCTACTACAATATCGAAAGAAACACAATCAAAAAGGTTGAAA 808
Query 455 TGCAAGGAATGGAAGCGTTTAAAGA 479
|||||||||||||||| ||||||||
Sbjct 809 TGCAAGGAATGGAAGCATTTAAAGA 833
Score = 169 bits (91), Expect = 4e-41
Identities = 106/113 (94%), Gaps = 2/113 (2%)
Strand=Plus/Plus
Query 492 AAGAAACACAATCAAAAAGGTTGAAATGCAAGGAATGGAAGCGTTTAAAGATAGTAA-GA 550
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
Sbjct 783 AAGAAACACAATCAAAAAGGTTGAAATGCAAGGAATGGAAGCATTTAAAGAGAGTAATG- 841
Query 551 TTTACACCTTTCTAGATCATGTAGAGGATGTGAAGCTTATGCAAATCTTTTAA 603
||||||||||||| ||||||||||||||||||||||| |||||| ||||||||
Sbjct 842 TTTACACCTTTCTGGATCATGTAGAGGATGTGAAGCTAATGCAATTCTTTTAA 894
> AT2G31470.1 | Symbols: DOR | F-box and associated interaction
domains-containing protein | chr2:13407492-13408655 REVERSE
LENGTH=1164
Length=1164
Score = 87.9 bits (47), Expect = 1e-16
Identities = 64/72 (89%), Gaps = 2/72 (3%)
Strand=Plus/Plus
Query 1 AGATGTCGTTGCGTATCAAAGCTTTGGGCCTCCATACTTAGCCGT-CCAGATTTCACCGA 59
|||||||||||||||||||||||||||||||||||||| ||| | || ||||||| ||
Sbjct 130 AGATGTCGTTGCGTATCAAAGCTTTGGGCCTCCATACTCCGCC-TACCCTATTTCACGGA 188
Query 60 GTTGTTCTTGAC 71
||||| ||||||
Sbjct 189 GTTGTACTTGAC 200
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30240956494
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5