BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480508
Length=1241
Score E
Sequences producing significant alignments: (Bits) Value
AT2G19620.1 | Symbols: NDL3 | N-MYC downregulated-like 3 | chr2... 2111 0.0
AT2G19610.2 | Symbols: | RING/U-box superfamily protein | chr2... 135 7e-31
> AT2G19620.1 | Symbols: NDL3 | N-MYC downregulated-like 3 | chr2:8485991-8488720
REVERSE LENGTH=1253
Length=1253
Score = 2111 bits (1143), Expect = 0.0
Identities = 1209/1241 (97%), Gaps = 4/1241 (0%)
Strand=Plus/Plus
Query 1 TCTTTCAATTTCAATTTCAAGATAGAAAGAGCAAGAAAGGCGCAGTCTTTGGGGGTTGGT 60
||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 4 TCTTTCAATTTCAGTTTCAAGATAGAAAGAGCAAGAAAGGCGCAGTCTTT--GGG--GGT 59
Query 61 TTCTCGGGTCATGGTGGGTTTAAACGACGACGTCTCACTCGACATTGAAGAGATCTACAA 120
||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||
Sbjct 60 TTCTCGGGTCATGGTGGGTTTAAACAACGCCGTCTCACTCGACATTGAAGAGATCTGCAA 119
Query 121 TGGTGGCAAGGAGCATCATGTCAAAACTTGCCATGGTTTAGTTTCAGTTGTAGTGTATGG 180
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 120 TGGTGGCAAGGAGCATCATGTCAAAACTTGCCATGGTTCAGTTTCAGTTGTAGTATATGG 179
Query 181 AGATCAAGAGAAACCAGCATTGATCACTTATCCAGATGTAGCACTAAACTATATGTCGTG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 180 AGATCAAGAGAAACCAGCATTGATCACTTATCCAGATGTAGCACTAAACTATATGTCTTG 239
Query 241 TTTCCAAGGATTGTTTCTATGCCCTGAAGCGGTGTCCTTACTGCTCCATAATTTCTGCAT 300
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 240 TTTCCAAGGATTGTTTCTATGCCCTGAAGCAGTGTCCTTACTGCTCCATAATTTCTGCAT 299
Query 301 CTACCATATTAGTCCCCCAGGACATGAGGTTGGAGCTGCTCCAGTTTGTTCCAATGATCC 360
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 300 CTACCATATTAGTCCTCCAGGACATGAGTTTGGAGCTGCTCCAGTTTGTTCCAATGATCC 359
Query 361 GTCACCTTCTGTTGAAGACCTCGCGGGCCAGATTCTTGAAGTATTGAACTTCTTTAGCCT 420
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 360 GTCACCTTCTGTTGAAGACCTCGCGGACCAGATTCTTGAAGTATTGAACTTCTTTAGCCT 419
Query 421 TGAGGCAGTAATGTGCATGGGGATCACAGCTGGTGCCTACATCCTTTCCTTGTTTGCTAT 480
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 420 CGAGGCAGTAATGTGCATGGGAATCACAGCTGGTGCCTACATCCTTTCCTTGTTTGCTAT 479
Query 481 TAAACATAAAGAACGAGTTTTGGGTTTGATTCTTATATCGCCTCTATGCAAAGCACCCTC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TAAACATAAAGAACGAGTTTTGGGTTTGATTCTTATATCGCCTCTATGCAAAGCACCCTC 539
Query 541 ATGGTCTGAATGGTTTTATTACAAGGTTGTGTCAAACTTATTGTACTACTATGGCATGTC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 ATGGTCTGAATGGTTTTATTACAAGGTTGTGTCAAACTTATTGTACTACTATGGCATGTC 599
Query 601 TGGACTGTTAAAAGATGTTTTCCTTCAGAGGTACTTCAGTAAGGAAGCTCGTGGTAGCTC 660
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TGGACTGTTAAAAGATATTTTCCTTCAGAGGTACTTCAGTAAGGAAGCTCGTGGTAGCTC 659
Query 661 TGAAGTTCCAGAGCGGGATGTGGTACATGAATGCAGAAGACTGCTAGGTGAAAGACACGG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TGAAGTTCCAGAGCGGGATGTGGTACATGAATGCAGAAGACTGCTAGGTGAAAGACACGG 719
Query 721 TAGTAGTCTTATGCGATTTCTGGAAGCAGTTAACAGGAGACATGACTTAACTGATGGATT 780
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 720 TAGTAGTCTTATGCGGTTTCTAGAAGCAGTTAACAGGAGACATGACTTAACTGATGGATT 779
Query 781 GAAGAGTTTGAAATGCCGTACACTCATCTTTGTTGGCGACCAATCTCCTTTCCACTCTGA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GAAGAGTTTGAAATGCCGTACACTCATCTTTGTTGGCGACCAATCTCCTTTCCACTCTGA 839
Query 841 AACTCTTCACATGGTGACAGCATTGGACAGAAAATACAGCGCCTTGGTTGAGGTGCAAGC 900
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 840 AACTCTTCACATGGTGACAGCATTGGACAGAAAGTACAGCGCCTTGGTTGAGGTGCAAGC 899
Query 901 GTGTGGATCAATGGTGACAGAAGAGCAACCACATGCAATGTTGATACCAATGGAGTTCTT 960
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TTGTGGATCAATGGTGACAGAAGAGCAACCACATGCAATGTTGATACCAATGGAGTTCTT 959
Query 961 TTTCATGGGGTTTGGATTGTATCGGCCTGGTCGGGTTAGCGATAGCCCCCGTAGTCCACT 1020
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 960 TTTCATGGGGTTTGGATTGTATCGGCCTGGTCGGGTTAGCGATAGCCCCCGGAGTCCACT 1019
Query 1021 CAGTCCGTCATGTATTTCGCCAGAGCTTCTTTCTCCAGAGAGTCTTGGTTTGAAGCTAAA 1080
||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||
Sbjct 1020 AAGTCCGTCATGTATTTCGCCAGAGCTTCTATCACCAGAGAGTCTTGGTTTGAAGTTAAA 1079
Query 1081 GCCAATAAAAACTCGGGTTCCCACGAAATGTTAAAGCCACCACACACGTTGATTCATTGT 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 GCCAATAAAAACTCGGGTTCCCACGAAATGTTAAAGCCACCACACACGTTGATTCATTGT 1139
Query 1141 ATTTTTCCTCTCATATTTGGCGTATCAATTCAAATATTCTTTTATTAAATTTGTGTTTGT 1200
||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1140 ATTCTTCCTCTCATATTTGGTTTATCAATTCAAATATTCTTTTATTAAATTCGTGTTTGT 1199
Query 1201 ACTTTGTAATCGCTTAACTCAAAAACTCTTTATTTATAAGA 1241
|||||||||||| ||||||||||||||||||||||||||||
Sbjct 1200 ACTTTGTAATCGATTAACTCAAAAACTCTTTATTTATAAGA 1240
> AT2G19610.2 | Symbols: | RING/U-box superfamily protein | chr2:8483940-8486086
FORWARD LENGTH=1840
Length=1840
Score = 135 bits (73), Expect = 7e-31
Identities = 77/79 (97%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 1163 TATCAATTCAAATATTCTTTTATTAAATTTGTGTTTGTACTTTGTAATCGCTTAACTCAA 1222
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1836 TATCAATTCAAATATTCTTTTATTAAATTCGTGTTTGTACTTTGTAATCGATTAACTCAA 1777
Query 1223 AAACTCTTTATTTATAAGA 1241
|||||||||||||||||||
Sbjct 1776 AAACTCTTTATTTATAAGA 1758
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60993662175
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5