BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480515
Length=1169
Score E
Sequences producing significant alignments: (Bits) Value
AT2G19570.1 | Symbols: CDA1, AT-CDA1, DESZ | cytidine deaminase... 1696 0.0
AT2G19572.1 | Symbols: | Potential natural antisense gene, loc... 1624 0.0
> AT2G19570.1 | Symbols: CDA1, AT-CDA1, DESZ | cytidine deaminase
1 | chr2:8470374-8471644 REVERSE LENGTH=1271
Length=1271
Score = 1696 bits (918), Expect = 0.0
Identities = 1038/1095 (95%), Gaps = 11/1095 (1%)
Strand=Plus/Plus
Query 1 GCGTAATGTAGTTTCATACGATGTTCTATCTATAAATAGTTTTGTTTCTCCAGCATCCAT 60
||||||||||||||| |||| |||| ||||||||||||| ||||||| ||||||||||||
Sbjct 1 GCGTAATGTAGTTTCCTACGTTGTTGTATCTATAAATAG-TTTGTTTGTCCAGCATCCAT 59
Query 61 TTCATAA-TCCTTGTTTCCCGGATCTCTCCCATCTCAAAAT---CCGACCCATTTACGCG 116
||||||| |||| ||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 60 TTCATAATTCCTCATTTCCCGGATCTCTCCCATCTAAAAATAACCCGACCCATTTACGCG 119
Query 117 TCCCAAACCGGGTCAACCCGAAATGGATAAGCTAAGCTTCGTAATCCAACCCAAAGAAGC 176
|||||||||| |||||||| ||||||||||| |||||||||||||||| ||||||||||
Sbjct 120 ACCCAAACCGGATCAACCCGCAATGGATAAGCCAAGCTTCGTAATCCAATCCAAAGAAGC 179
Query 177 TGAATCCGCCGCGAAACAACTCGGCGTCTCCGT-ATTCCAGCTCCTTCCGTCGCTAGTCA 235
|||||||||||||||||||||||||| ||||| ||| |||||||| |||||||||||||
Sbjct 180 AGAATCCGCCGCGAAACAACTCGGCGTTTCCGTCATT-CAGCTCCTCCCGTCGCTAGTCA 238
Query 236 AACCAGCACAATCCTACGCTCGAACTCCGATTTCAAAATTCAACGTCGGAGTCGTCGGAC 295
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 239 AACCAGCACAATCCTACGCTCGAACTCCGATTTCGAAATTCAACGTCGCAGTCGTCGGAC 298
Query 296 TCGGATCATCAGGTCGGATCTTCTTAGGCGTCAATGTCGAATTCCCAAATCTCCCTCTCC 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TCGGATCATCAGGTCGGATCTTCTTAGGCGTCAATGTCGAATTCCCAAATCTCCCTCTCC 358
Query 356 ACCACTCAATCCACGCCGAACAATTCCTCGTCACCAATCTCACACTCAACGGTGAACGTC 415
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 359 ACCACTCAATCCACGCCGAACAGTTCCTCGTCACCAATCTCACACTCAACGGTGAACGTC 418
Query 416 ATCTCAAATTCTTCGCCGTCTCCGCCGCACCGTGTGGTCATTGCCGTCAATTCCTCCAAG 475
||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 419 ATCTCAATTTCTTCGCCGTCTCCGCCGCACCATGTGGCCATTGCCGTCAATTCCTCCAAG 478
Query 476 AAATCCGCGACGCACCTGAAATCAAAATCCTAATCACCGATCCAAAAAACTCCGCCGATT 535
|||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 479 AAATTCGCGACGCACCTGAAATCAAAATCCTTATCACCGATCCAAACAACTCCGCCGATT 538
Query 536 CCGATTCCGCCGCCGATTCAGACGGATTCTTACGTCTCGGAAGCTTCTTACCTCACAGAT 595
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 539 CCGATTCCGCCGCCGATTCAGACGGATTCTTACGTCTCGGAAGCTTCTTGCCACACAGAT 598
Query 596 TCGGTCCCGACGATCTTCTCGAGAAAGATCTTCCTCTTCTTCTCGAACCTCACGATAACC 655
||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||
Sbjct 599 TCGGTCCCGACGATCTTCTCGGGAAAGATCATCCTCTTCTTCTCGAATCTCACGATAACC 658
Query 656 ATCTCAAAATCTCAGATCTCGATTCGATTTGTAACGGAATCACTGATTCATCCGCCGATT 715
||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||
Sbjct 659 ATCTCAAAATCTCAGATCTGGATTCGATTTGTAACGGAAACACCGATTCATCCGCCGATT 718
Query 716 TGAAACAAACGGCTTTAGCGGCGGCGAATAGATCGTACGCGCCGTATAGTTTATGTCCGT 775
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 719 TGAAACAAACGGCTTTAGCGGCGGCGAATAGATCGTACGCGCCGTATAGTTTATGTCCAT 778
Query 776 CGGGAGTTTCGTTGGTGGATTGTGACGGGAAAGTGTACAGAGGTTGGTACATGGAATCGG 835
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 779 CGGGAGTTTCGCTGGTGGATTGTGACGGGAAAGTGTACAGAGGTTGGTATATGGAATCGG 838
Query 836 CGGCGTACAATCCTAGTATGGGACCAGTACAGGCGGCGTTGGTTGATTACGTGGCAAATG 895
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 839 CGGCGTATAATCCTAGTATGGGACCAGTACAGGCGGCGTTGGTTGATTATGTGGCTAATG 898
Query 896 GTGGTGGAGGAGGTTACGAGAGGATCATCGGAGCGGTTCTGGTGGAGAAAGAAGATGCGG 955
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 899 GTGGTGGAGGAGGATACGAGAGGATCGTCGGAGCGGTTCTGGTGGAGAAAGAAGATGCGG 958
Query 956 TGGTGCGGCAAGAGCACACGGCGAGGTTGTTATTAGAGACTATATCGCCGAAATGCGAAT 1015
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TGGTGAGGCAAGAGCACACGGCGAGGTTGTTATTAGAGACTATATCGCCGAAATGCGAAT 1018
Query 1016 TCAAAGTGTTTCATTGCTTTGGAGCTTAAGAGAATCCCTTTAATTATCGGAAGAATAAAG 1075
|||||||||||||||||| || |||||| ||||||| |||||||||| ||| |||||||
Sbjct 1019 TCAAAGTGTTTCATTGCTATGAAGCTTA-GAGAATCA-TTTAATTATCCGAAAAATAAAG 1076
Query 1076 GAATT--aaaaaaaa 1088
||||| ||||||||
Sbjct 1077 GAATTTTAAAAAAAA 1091
> AT2G19572.1 | Symbols: | Potential natural antisense gene, locus
overlaps with AT2G19570 | chr2:8470620-8471735 FORWARD
LENGTH=1116
Length=1116
Score = 1624 bits (879), Expect = 0.0
Identities = 979/1027 (95%), Gaps = 7/1027 (1%)
Strand=Plus/Minus
Query 1 GCGTAATGTAGTTTCATACGATGTTCTATCTATAAATAGTTTTGTTTCTCCAGCATCCAT 60
||||||||||||||| |||| |||| ||||||||||||| ||||||| ||||||||||||
Sbjct 1025 GCGTAATGTAGTTTCCTACGTTGTTGTATCTATAAATAG-TTTGTTTGTCCAGCATCCAT 967
Query 61 TTCATAA-TCCTTGTTTCCCGGATCTCTCCCATCTCAAAAT---CCGACCCATTTACGCG 116
||||||| |||| ||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 966 TTCATAATTCCTCATTTCCCGGATCTCTCCCATCTAAAAATAACCCGACCCATTTACGCG 907
Query 117 TCCCAAACCGGGTCAACCCGAAATGGATAAGCTAAGCTTCGTAATCCAACCCAAAGAAGC 176
|||||||||| |||||||| ||||||||||| |||||||||||||||| ||||||||||
Sbjct 906 ACCCAAACCGGATCAACCCGCAATGGATAAGCCAAGCTTCGTAATCCAATCCAAAGAAGC 847
Query 177 TGAATCCGCCGCGAAACAACTCGGCGTCTCCGT-ATTCCAGCTCCTTCCGTCGCTAGTCA 235
|||||||||||||||||||||||||| ||||| ||| |||||||| |||||||||||||
Sbjct 846 AGAATCCGCCGCGAAACAACTCGGCGTTTCCGTCATT-CAGCTCCTCCCGTCGCTAGTCA 788
Query 236 AACCAGCACAATCCTACGCTCGAACTCCGATTTCAAAATTCAACGTCGGAGTCGTCGGAC 295
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 787 AACCAGCACAATCCTACGCTCGAACTCCGATTTCGAAATTCAACGTCGCAGTCGTCGGAC 728
Query 296 TCGGATCATCAGGTCGGATCTTCTTAGGCGTCAATGTCGAATTCCCAAATCTCCCTCTCC 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 727 TCGGATCATCAGGTCGGATCTTCTTAGGCGTCAATGTCGAATTCCCAAATCTCCCTCTCC 668
Query 356 ACCACTCAATCCACGCCGAACAATTCCTCGTCACCAATCTCACACTCAACGGTGAACGTC 415
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 667 ACCACTCAATCCACGCCGAACAGTTCCTCGTCACCAATCTCACACTCAACGGTGAACGTC 608
Query 416 ATCTCAAATTCTTCGCCGTCTCCGCCGCACCGTGTGGTCATTGCCGTCAATTCCTCCAAG 475
||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 607 ATCTCAATTTCTTCGCCGTCTCCGCCGCACCATGTGGCCATTGCCGTCAATTCCTCCAAG 548
Query 476 AAATCCGCGACGCACCTGAAATCAAAATCCTAATCACCGATCCAAAAAACTCCGCCGATT 535
|||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 547 AAATTCGCGACGCACCTGAAATCAAAATCCTTATCACCGATCCAAACAACTCCGCCGATT 488
Query 536 CCGATTCCGCCGCCGATTCAGACGGATTCTTACGTCTCGGAAGCTTCTTACCTCACAGAT 595
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 487 CCGATTCCGCCGCCGATTCAGACGGATTCTTACGTCTCGGAAGCTTCTTGCCACACAGAT 428
Query 596 TCGGTCCCGACGATCTTCTCGAGAAAGATCTTCCTCTTCTTCTCGAACCTCACGATAACC 655
||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||
Sbjct 427 TCGGTCCCGACGATCTTCTCGGGAAAGATCATCCTCTTCTTCTCGAATCTCACGATAACC 368
Query 656 ATCTCAAAATCTCAGATCTCGATTCGATTTGTAACGGAATCACTGATTCATCCGCCGATT 715
||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||
Sbjct 367 ATCTCAAAATCTCAGATCTGGATTCGATTTGTAACGGAAACACCGATTCATCCGCCGATT 308
Query 716 TGAAACAAACGGCTTTAGCGGCGGCGAATAGATCGTACGCGCCGTATAGTTTATGTCCGT 775
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 307 TGAAACAAACGGCTTTAGCGGCGGCGAATAGATCGTACGCGCCGTATAGTTTATGTCCAT 248
Query 776 CGGGAGTTTCGTTGGTGGATTGTGACGGGAAAGTGTACAGAGGTTGGTACATGGAATCGG 835
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 247 CGGGAGTTTCGCTGGTGGATTGTGACGGGAAAGTGTACAGAGGTTGGTATATGGAATCGG 188
Query 836 CGGCGTACAATCCTAGTATGGGACCAGTACAGGCGGCGTTGGTTGATTACGTGGCAAATG 895
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 187 CGGCGTATAATCCTAGTATGGGACCAGTACAGGCGGCGTTGGTTGATTATGTGGCTAATG 128
Query 896 GTGGTGGAGGAGGTTACGAGAGGATCATCGGAGCGGTTCTGGTGGAGAAAGAAGATGCGG 955
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 127 GTGGTGGAGGAGGATACGAGAGGATCGTCGGAGCGGTTCTGGTGGAGAAAGAAGATGCGG 68
Query 956 TGGTGCGGCAAGAGCACACGGCGAGGTTGTTATTAGAGACTATATCGCCGAAATGCGAAT 1015
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 67 TGGTGAGGCAAGAGCACACGGCGAGGTTGTTATTAGAGACTATATCGCCGAAATGCGAAT 8
Query 1016 TCAAAGT 1022
|||||||
Sbjct 7 TCAAAGT 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57379222935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5