BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480516
Length=1270
Score E
Sequences producing significant alignments: (Bits) Value
AT2G19560.1 | Symbols: EER5 | proteasome family protein | chr2:... 2052 0.0
> AT2G19560.1 | Symbols: EER5 | proteasome family protein | chr2:8465768-8469116
REVERSE LENGTH=1445
Length=1445
Score = 2052 bits (1111), Expect = 0.0
Identities = 1217/1269 (96%), Gaps = 3/1269 (0%)
Strand=Plus/Plus
Query 1 GAATACGAAGAAGAAGAAGGTAACAATGGCGTACGTTAGTATGGGTGAAGCTCACCGGCG 60
||| ||| ||| ||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 23 GAAGACGCAGACGAAGAAGGTGACAATGGCGTACGTTAGTATGGGTGAAGCTCACCGGAG 82
Query 61 AATCACTGAATACTTAAACCGTTTCTGCGACGCCGTTTCGTACCAAGActcttctacact 120
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 83 AATCACTGAATACCTAAACCGATTCTGCGACGCCGTTTCGTACCAAGACTCTTCTACACT 142
Query 121 ttgccgtctcctctctttctcttccaattctccacctcttctctcactcGCCGACGCAGT 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 143 TTGCCGTCTCCTCTCTTTCTCTTCCAATTCTCCACCTCTTCTCTCACTCGCCGACGCACT 202
Query 181 CAACGTCTTCCAGGTACATGCTAGCAGTTTGATTAGACAGTCTGATAAATTCTCTGAATA 240
|||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||
Sbjct 203 CAACGTCTTCCAGG---ATTCTAGCAGTTTGATTAGACAGTCTGATAGATTCTCTGAATA 259
Query 241 TGGCGAGATTCTGGCTCATTTGTTTCGTTCTCTACAAAGTTACCGAGTTGGGAATCTAGT 300
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 260 TGGCGAGATTCTGGCTCATGTGTTTCGTTCTCTACAAAGTTACCGAGTTGGGAATCTAGT 319
Query 301 CGAAGCATACCTCGCTTTCGAGAAGTTTGCCAATGCATTTGTTCAGGAGTTTCGTAATTG 360
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 320 CGAAGCATACCTTGCTTTCGATAAGTTTGCCAATGCATTTGTTCAGGAGTTTCGTAATTG 379
Query 361 GGAATCTGCTTGGGCATTGGAAGCTCTGTATGTTGTTTGTTATGAAATTCGAATTCTTGC 420
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 380 GGAATCTGCTTGGGCATTGGAAGCTCTGTATGTAGTTTGTTATGAAATTCGAGTTCTTGC 439
Query 421 GGAAAAGGCTGATAAGGAGTTAACTTCTAATGGAAAATCTCCCGAGAAATTAAAAGCAGC 480
||||||||||||||| || ||||||||||||||||| ||||| |||||||||||||||||
Sbjct 440 GGAAAAGGCTGATAAAGATTTAACTTCTAATGGAAAGTCTCCAGAGAAATTAAAAGCAGC 499
Query 481 TGGATCTCTTCTCATGAAAGTTTTTGGAGTTCTTGCTGGGAAAGGTCCAAAACGAGTCGG 540
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 500 TGGGTCTCTTCTCATGAAAGTTTTTGGAGTTCTTGCTGGGAAAGGTCCAAAACGAGTCGG 559
Query 541 AGCATTATATGTGACTTGCCAATTGTTCAAGACCTACTTTAAGCTTGGAACCGTCAATCT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 560 AGCATTATATGTGACTTGCCAATTGTTCAAGACCTACTTTAAGCTTGGAACCGTCAATCT 619
Query 601 TTGTCGAAGTGTAATAAGAAGTATCGAAACTGCTCGGATATTTGACTTTGAGGAGTTTCC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 620 TTGTCGAAGTGTAATAAGAAGTATCGAAACTGCTCGGATATTTGACTTTGAGGAGTTTCC 679
Query 661 AAGAAGAGACAAGGTTACATACATGTATTATACCGGACGATTAGAAGTCTTCAACGAAAA 720
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 680 AAGAAGAGATAAGGTTACATACATGTATTATACCGGCCGATTAGAAGTCTTCAACGAAAA 739
Query 721 TTTTCCAGCTGCTGATACAAAGCTATCATATGCCTTGCAATATTGCAACCCCAAAAGAGA 780
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 740 TTTTCCTGCTGCTGATACAAAGCTATCATATGCCTTGCAAAATTGCAACCCCAAAAGAGA 799
Query 781 ACGGAATATAAGGATGATATTGAAGTATTTGATACCCGTGAAACTTTCAATAGGAATTAT 840
||| ||||||||||||||||| ||||||||| |||| ||||| ||||| ||||||||||
Sbjct 800 ACGAAATATAAGGATGATATTAAAGTATTTGGTACCGGTGAAGCTTTCTTTAGGAATTAT 859
Query 841 ACCAAAAGACGAGCTCTTGCAAAATTATAATCTGCATGAGTATACAAAGATTGTGCAAGC 900
||||||||| |||||| ||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 860 ACCAAAAGATGAGCTCCTGCGAAATTATAATCTGCATGAGTACACAAAGATTGTGCAAGC 919
Query 901 TCTGAGAAAGGGTGATCTCAGGCTTCTCCGGCATGCTCTTCAAGAACATGAAGATCGGTT 960
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 920 TCTGAGAAAGGGTGATCTAAGGCTTCTCCGGCATGCTCTTCAAGAACATGAAGATCGGTT 979
Query 961 CTTGAGGTCGGGTGTATATCTTGTCTTGGAAAAGCTAGAGCTCCAAGTCTACCAGAGACT 1020
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 980 CTTGAGGTCGGGTGTGTATCTTGTCTTGGAAAAGCTAGAGCTCCAAGTCTACCAGAGACT 1039
Query 1021 CATGAAGAAAATTTATATAATCCAGAAGCAGAGTGACCCAGCGAGAGCTCACCAGCTGAA 1080
|||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||
Sbjct 1040 CATGAAGAAAATTTATATAAACCAGAAGCTGAGTGATCCAGCGAGAGCTCACCAGCTGAA 1099
Query 1081 GCTTGAAGTGATTGCCAAAGCACTAAGATGGCTAGAAATGGACATGGATCTCGACGAGGT 1140
|||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1100 GCTTGAAGGGATTGCCAAAGCACTAAGATGGCTAGATATGGACATGGATCTGGACGAGGT 1159
Query 1141 GGAATGTATAATGACGATTTTGATATACAAAAACCTTGTGAAAGGTTATTTAGCTCACAA 1200
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1160 GGAATGTATAATGACGATATTGATATACAAAAACCTTGTGAAAGGTTATTTAGCTCACAA 1219
Query 1201 GAGCAAAGTGGTAGTTCTAAGCAAGCAAGATCCATTCCCTAAACTTAACGGGAAACCGGT 1260
||||||||||||||||||||||||||||||||| ||||||||||| |||||||| || ||
Sbjct 1220 GAGCAAAGTGGTAGTTCTAAGCAAGCAAGATCCTTTCCCTAAACTAAACGGGAAGCCTGT 1279
Query 1261 TGGCTCATA 1269
| |||||||
Sbjct 1280 TAGCTCATA 1288
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62449477980
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5