BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480518
Length=1650
Score E
Sequences producing significant alignments: (Bits) Value
AT2G19540.1 | Symbols: | Transducin family protein / WD-40 rep... 2612 0.0
> AT2G19540.1 | Symbols: | Transducin family protein / WD-40 repeat
family protein | chr2:8461757-8464534 FORWARD LENGTH=1644
Length=1644
Score = 2612 bits (1414), Expect = 0.0
Identities = 1579/1656 (95%), Gaps = 21/1656 (1%)
Strand=Plus/Plus
Query 1 ATCCTAAATTGATCATCGTCCTCCTTTAGAGTTATTTAGAAAATCAGAAAGACCAAAATG 60
|||||||||||||||||||| |||||| |||| ||||||||||| |||||||
Sbjct 1 ATCCTAAATTGATCATCGTCGTCCTTT-GAGTAATTTAGAAAAT---------CAAAATG 50
Query 61 GGCCGCACCGTGAAAACCAAGGCAAAGAGGAAGAACAAGAAGAAGGCAGAGGCGTCTTCT 120
|| |||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 51 GGTCGCAACGTCAAAACCAAGGCAAAGAGGAAGAACAAGAAGAAAGCAGAGGCGTCTTCT 110
Query 121 TCCGAGATACCTTCGATACCAACTAGGGTTTGGCAACCAGGTGTTGATACCCTTGAAGAT 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 111 TCCGAGATACCATCGATACCAACTAGGGTTTGGCAACCAGGTGTTGATACCCTTGAAGAT 170
Query 181 GGAGAAGAACTTCAGTGTGACCCTTCTGCTTATAATTCTCTCCATGGCTTTCATGTTGGT 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 171 GGAGAAGAACTTCAGTGTGACCCTTCTGCTTATAATTCTCTCCATGGCTTCCATGTTGGT 230
Query 241 TGGCCTTGTTTGAGTTTTGACATTTTAGGTGATAAGTTGGGTTTGAACCGAACTGAGTTT 300
||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 TGGCCCTGTCTGAGCTTTGACATTTTAGGTGATAAGTTGGGTTTGAACCGAACTGAGTTT 290
Query 301 CCTCACACACTTTATATGGTGGCTGGGACTCAGGCTGAGAAAGCAGCTCATAACTCCATA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 CCTCACACACTTTATATGGTGGCTGGGACTCAGGCTGAGAAAGCAGCTCATAACTCCATA 350
Query 361 GGGTTATTTAAAATCACCAACGTATCTGGTAAGAGACGTGATGTTGTGCCTAAGACATTA 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 GGGTTATTTAAAATCACCAACGTATCTGGTAAGAGACGTGATGTTGTGCCTAAGACATTT 410
Query 421 G-CGAatggtgatgatatggaggatgaggatgatgatgatgacagtgacagcgatgacga 479
| | |||||||| ||| | ||||||||||||| || |||||||||||||||||||| ||
Sbjct 411 GGC-AATGGTGAGGAT--G-AGGATGAGGATGACGAAGATGACAGTGACAGCGATGATGA 466
Query 480 tgaaggagatgaAGCTTCCAAAACTCCTAATATTCAGGTTCGCAGGGTTGCTCACCATGG 539
||| |||||||||||||| |||||||| |||||||||||||| |||||||||||||||||
Sbjct 467 TGACGGAGATGAAGCTTCTAAAACTCCAAATATTCAGGTTCGAAGGGTTGCTCACCATGG 526
Query 540 ATGTGTTAACCGTATACGTGCAATGCCACAAAATTCTCATATCTGTGTCTCTTGGGCAGA 599
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 527 ATGTGTTAACCGTATACGTGCAATGCCACAAAACTCTCATATCTGTGTCTCTTGGGCAGA 586
Query 600 TTCTGGTCATGTACAGGTCTGGGACATGAGCTCTCATCTTAATGCTTTAGCCGAATCAGA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 TTCTGGTCATGTACAGGTCTGGGACATGAGCTCTCATCTTAATGCTTTAGCCGAATCAGA 646
Query 660 AACAGAAGGTAAAGATGGAACTTCACCGGTTCTTAACCAAGCACCCTTAGTAAACTTTTC 719
|||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 647 AACAGAGGGTAAAGATGGAACTTCACCGGTTCTTAACCAAGCACCCTTGGTTAACTTTTC 706
Query 720 TGGCCACAAAGATGAAGGCTATGCTATAGATTGGAGTCCTGCAACCGCTGGAAGACTTCT 779
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 707 TGGTCACAAAGATGAAGGCTATGCTATAGACTGGAGTCCTGCAACCGCTGGAAGACTTCT 766
Query 780 TTCCGGGGACTGCAAGAGTATGATTCACTTATGGGAGCCAGCTTCTGGTTCATGGGCTGT 839
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 767 TTCCGGGGACTGCAAGAGTATGATTCACCTGTGGGAGCCAGCTTCTGGTTCATGGGCTGT 826
Query 840 TGATCCTATTCCGTTCGCTGGACACACTGCAAGTGTTGAAGATTTACAATGGAGTCCAGC 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 TGATCCTATTCCGTTCGCTGGACACACTGCAAGTGTTGAAGATTTACAATGGAGTCCAGC 886
Query 900 CGAAGAAAACGTGTTTGCTTCATGTTCTGTGGATGGGAGTGTTGCAGTATGGGATATCCG 959
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||
Sbjct 887 CGAAGAAAACGTGTTTGCCTCATGTTCTGTGGATGGGAGTGTTGCAGTCTGGGATATTCG 946
Query 960 TCTTGGGAAGTCGCCTGCACTATCTTTCAAGGCACATAACGCAGATGTGAATGTCATCTC 1019
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 947 ACTTGGGAAGTCCCCTGCACTATCTTTCAAGGCACATAACGCAGATGTGAATGTCATCTC 1006
Query 1020 ATGGAACAGGCTGGCTAGTTGCATGTTGGCCTCAGGAAGTGATGACGGGACATTCTCCAT 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 ATGGAACAGGCTGGCTAGTTGCATGTTGGCCTCAGGAAGTGATGACGGGACATTCTCCAT 1066
Query 1080 CCGTGATCTTAGACTGATCAAAGGTGGAGATGCAGTGGTAGCACATTTTGAGTACCATAA 1139
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1067 CCGTGATCTTAGACTGATCAAAGGTGGAGATGCTGTGGTAGCACATTTTGAGTACCATAA 1126
Query 1140 GCACCCTATCACTTCAATTGAATGGAGCGCTCATGAAGCTTCGACACTTGCAGTCACTTC 1199
||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1127 GCATCCTATTACGTCAATTGAATGGAGCGCTCATGAAGCTTCGACACTTGCAGTCACTTC 1186
Query 1200 CGGTGATAACCAGCTCACGATATGGGATCTATCCTTAGAGAAGGATGAAGAAGAAGAGGC 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1187 CGGTGATAACCAGCTCACGATATGGGATCTATCCTTAGAGAAGGATGAAGAAGAAGAGGC 1246
Query 1260 AGAGTTCAAGGCACAGACCAAGGAACTAGTCAACACACCTCAAGACTTGCCTCCCCAGCT 1319
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1247 AGAGTTCAATGCACAGACCAAGGAACTAGTCAACACACCTCAAGACTTGCCTCCTCAGCT 1306
Query 1320 TCTCTTTGTTCACCAAGGACAAAAGGATCTGAAGGAACTTCACTGGCACAACCAGATTCC 1379
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1307 TCTCTTTGTTCACCAAGGACAAAAAGATCTGAAGGAACTTCACTGGCACAACCAGATTCC 1366
Query 1380 GGGGATGATCATCTCAACTGCTGCTGATGGTTTCAACATCCTAATGCCTTACAACATTCA 1439
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 1367 GGGGATGATCATCTCAACTGCTGGTGATGGTTTCAACATCTTAATGCCTTACAACATTCA 1426
Query 1440 GAACACACTTCCGTCTGAGCTACCAGCCTGAAAGACGGGGTCTTTCTCTGAAAACTCTTG 1499
|||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 1427 GAACACGCTTCCGTCTGAGCTACCAGCCTGAAAGACAAGGTCTTACTCTGAAAACTCTTG 1486
Query 1500 AAGTACTACTCATAGTTT-GTACTGTCCTCTCTCTGTTCTCTTTCATTGTATCATTGATA 1558
||||| |||||||||||| || |||||||||||||||||||||| |||||||||||||
Sbjct 1487 AAGTATTACTCATAGTTTTGTGTTGTCCTCTCTCTGTTCTCTTTCCTTGTATCATTGATG 1546
Query 1559 GCAAGTTTCAAGAATTATTATACTCTTTCACAACTTTGAAGTTTTCATCATCAGTTTATT 1618
||||||| |||||||||| | |||||||||||| ||| ||||||||||||||||||||||
Sbjct 1547 GCAAGTTGCAAGAATTAT-ACACTCTTTCACAAGTTTCAAGTTTTCATCATCAGTTTATT 1605
Query 1619 ----GATTTCAGTTGTGACAAAATGTCAATTTTTGA 1650
||||||||||||||||||||||||| ||||||
Sbjct 1606 TACTGATTTCAGTTGTGACAAAATGTCAAATTTTGA 1641
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81525685080
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5