BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480519
Length=1040
Score E
Sequences producing significant alignments: (Bits) Value
AT2G19530.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1476 0.0
> AT2G19530.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G55160.2);
Has 461 Blast hits to 346 proteins in 80 species: Archae -
0; Bacteria - 16; Metazoa - 89; Fungi - 28; Plants - 57; Viruses
- 0; Other Eukaryotes - 271 (source: NCBI BLink). | chr2:8459947-8461715
FORWARD LENGTH=1110
Length=1110
Score = 1476 bits (799), Expect = 0.0
Identities = 962/1037 (93%), Gaps = 26/1037 (3%)
Strand=Plus/Plus
Query 26 AAGAT-C-AAAGAGAGAAACGA-GAATCAATCTATTGCTTGAGGAATAAGGCAGGGAAGC 82
||||| | |||||||||||| | |||||||| ||||||||||||||||||| ||||||||
Sbjct 78 AAGATACTAAAGAGAGAAAC-ATGAATCAATGTATTGCTTGAGGAATAAGGTAGGGAAGC 136
Query 83 TAATCAATCACGAGTAGAAGAAACGGAGGATTTCATCAAATTAGGGTTTTTAGACCTACA 142
||||||||||| |||||| ||| ||||| ||||||| |||||||||||||||||||||||
Sbjct 137 TAATCAATCACAAGTAGACGAATCGGAGTATTTCATAAAATTAGGGTTTTTAGACCTACA 196
Query 143 TTTTCttttttttttGCCGACGATACTTTAATTGCTCGAGAAACTCTATAAGTCGCGAAA 202
||||||||| ||||| |||||||||||| |||||||||||||||||||| ||| | ||||
Sbjct 197 TTTTCTTTTCTTTTT-CCGACGATACTTAAATTGCTCGAGAAACTCTATTAGT-GAGAAA 254
Query 203 T-CTCCATCGGAA--TCGATGGAATCATCTCCTCCTGGATCCGAACCTCCGCAGAAAGTC 259
| | ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 255 TCCCCCATCGGAATCTCGATGGAATCATCTCCTTCTGGATCCGAACCTCCGCAGAAAGTC 314
Query 260 GTTTCTAAACTGCAAAAAGTCGGCTGGCGAGCTACGATGATCTTCAATCTTGGTTTTGCA 319
|||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 315 GTTTCTAAACTGCAGAAAGTAGGCTGGCGAGCTACGATGATCTTCAATCTCGGTTTTGCA 374
Query 320 GCTTATATATTTGCGATAAAACGAGAAAAGGATATTGATGCGGACGAGAAGAAGAAAGTT 379
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 375 GCTTATATATTTGCGATAAAACGAGAAAAGGACATTGATGCGGACGAGAAGAAGAAAGTT 434
Query 380 AAAAAGGGCAGCGAGGCCAGAAATAAAGGTGTGAAAAAGGGTGCTGTTAACACAGAGGTC 439
||||||||||||||||| ||| ||||||||||||||||||||||||||||||| || ||
Sbjct 435 AAAAAGGGCAGCGAGGCTAGACATAAAGGTGTGAAAAAGGGTGCTGTTAACACCGAAATC 494
Query 440 GAGAAGAAAGGTGCAGAAGAGACTGATAAGGCTAAGGAAGCAGAAACTGCAGTACCGGAG 499
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 495 GAGAAGAAAGGTGCAGAAGAAACTGATAAGGCTAAGGAAGCAGAAACTGCAATACCGGAG 554
Query 500 AAGGAAGAAACCAAACCGATCCTTGAACTGGATCCGCTGTTTGAATTTACAGATGCAGCT 559
|||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||| ||
Sbjct 555 AAGGAAGAAACCAAACTGATCCCTGAACTGGATCCACTGTTTGAATTTACAGATGCAACT 614
Query 560 GATCAGTCGGTGTTTCAGACTGTGGCAACTGAACATGTAAAGGTAGCAAGGAAACCGATT 619
||||| || ||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 615 GATCAATCCATGTTTCAAACTGTGGCAACTGAACATGTAAAGGTAGCAAGGAAACCAATT 674
Query 620 CCAGAAGATGAGCAAAAGGAGCTTTTCAAGTGGATATTGgaagagaaaaggaagatagaa 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 CCAGAAGATGAGCAAAAGGAGCTTTTCAAGTGGATATTGGAAGAGAAAAGGAAGATAGAA 734
Query 680 ccaaaagacagaaaagaaaagaaacaaatcgatgaagagaaagCTATTCTGAAACAGTTC 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 CCAAAAGACAGAAAAGAAAAGAAACAAATCGATGAAGAGAAAGCTATTCTGAAACAGTTC 794
Query 740 ATTCGTGCCGAGAGGATTCCCAAACTTCTCCCTGATGATTCCGTTGATTCTTCGCTTCGT 799
|||||||| ||||||||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct 795 ATTCGTGCTGAGAGGATTCCAAAACTTCTACCTGATGATTCCGTTGATTCTTCACTTCGT 854
Query 800 GATTGGGACAAATTCTTCTCCAAATAGAAAGAAAACAGAAACTAGTGTGTACTTGTTTTT 859
||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||
Sbjct 855 GATTGGGACAAATTCTTCTCCAAGTAGAACGAATACAGAAACTAGTGTGTACTTGTTTTT 914
Query 860 TGTTAGTACACGAAATTATCATTGTTGGCTTTTTAGTTCTACTACTCTGATTGTTACTCT 919
||||||||||| |||| | ||||||||||||||||||| |||||||||||||||||||||
Sbjct 915 TGTTAGTACACCAAATGACCATTGTTGGCTTTTTAGTTTTACTACTCTGATTGTTACTCT 974
Query 920 AATCAACGAATAGTTTAAATGTGATTTCTTGGGG-TT-----T-----T---ATAAAACT 965
|||||||||||||||||||||||||||||||||| || | | ||||||||
Sbjct 975 AATCAACGAATAGTTTAAATGTGATTTCTTGGGGGTTGAGAGTGGCACTTTTATAAAACT 1034
Query 966 TTGGGGTATTGTTT-TCATTTCTTATAAGATAAAGGACTTAAAG-ATAAATTCAATAAAC 1023
|||||||| ||||| | ||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1035 TTGGGGTAATGTTTCT-ATTTCTTATAATATAAAGGACTTAAAATATAAATTCAATAAAA 1093
Query 1024 AGAAGGGTGTTTCTGAG 1040
| |||||||||||||||
Sbjct 1094 ATAAGGGTGTTTCTGAG 1110
Score = 65.8 bits (35), Expect = 8e-10
Identities = 40/42 (95%), Gaps = 2/42 (5%)
Strand=Plus/Plus
Query 1 ATGAGACCGTCAAGATCAGTCAGAGAAGATCAAA-GAGAGAA 41
|||||||||||||||||||||||||||||||||| || ||||
Sbjct 24 ATGAGACCGTCAAGATCAGTCAGAGAAGATCAAACGA-AGAA 64
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50987659205
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5