BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg480521 Length=336 Score E Sequences producing significant alignments: (Bits) Value AT1G36000.1 | Symbols: LBD5 | LOB domain-containing protein 5 |... 320 5e-87 AT2G19510.1 | Symbols: LBD8 | LOB domain-containing protein 8 |... 276 1e-73 > AT1G36000.1 | Symbols: LBD5 | LOB domain-containing protein 5 | chr1:13422554-13423028 FORWARD LENGTH=387 Length=387 Score = 320 bits (173), Expect = 5e-87 Identities = 258/296 (87%), Gaps = 18/296 (6%) Strand=Plus/Plus Query 1 ATGGAACCTCTAGGGAACCATCGTCCTTACTCTGTATGTATCACCAGAAACAAAAACTGT 60 |||||||||||||| |||| |||||||| ||| ||||||||||||| ||||| ||| ||| Sbjct 14 ATGGAACCTCTAGGAAACCGTCGTCCTTGCTCCGTATGTATCACCAAAAACAGAAATTGT 73 Query 61 CCCCA-AAACTGCGAATATGCGA-AATATTTTCCATATAAATT------TCAATATGAAA 112 |||| | |||||||||||| | |||| ||||||||| |||| ||||||||||| Sbjct 74 -CCCAGATTCTGCGAATATGC-AGAATACTTTCCATATGAATTGCAAAGTCAATATGAAA 131 Query 113 GTGCTAATGAATTGTTTGGCACGCCAAATATCATTAAGATGATG-AGGCATGTTCCCGAA 171 |||||||||||||||||||||| ||||||||||||| ||||||| || |||| ||| ||| Sbjct 132 GTGCTAATGAATTGTTTGGCACACCAAATATCATTACGATGATGCAG-CATGCTCCTGAA 190 Query 172 GaaaaaaaaCAAATACTAGCAACTTCCATAATCATGGAAGGTAATGCTTGGACA-AAGGA 230 |||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||| | Sbjct 191 GAAAAAAAACAAATGCTAGCAACTTCTATAATCATGGAAGGTAATGCTTGGACAGAAG-A 249 Query 231 TCCTATATATAAGTGGTGGATTCGGTGTGATGCAAAAGCTCATTTGGAAGATTATG 286 ||||||| | |||||||||||||| |||| ||||||||||| |||||||||||| Sbjct 250 TCCTATA-A---GTGGTGGATTCGGTATGATTCAAAAGCTCATGTGGAAGATTATG 301 > AT2G19510.1 | Symbols: LBD8 | LOB domain-containing protein 8 | chr2:8453219-8453682 FORWARD LENGTH=380 Length=380 Score = 276 bits (149), Expect = 1e-73 Identities = 249/295 (84%), Gaps = 16/295 (5%) Strand=Plus/Plus Query 1 ATGGAACCTCTAGGGA-ACCATCGTCCTTACT-CTGTATGTATCACCAGAAACAAAAACT 58 |||||||| ||| ||| | | |||||||| || | ||||||||||||| ||| | ||| | Sbjct 12 ATGGAACCACTA-GGAGATCGTCGTCCTTGCTGC-GTATGTATCACCAAAAATAGAAATT 69 Query 59 GTCCCCA-AAACTGCGAATATGCGAAATATTTTCCATATAAATT------TCAATATGAA 111 || || | | ||||||||||||| |||| ||||||||| | || ||| |||||| Sbjct 70 GT-CCTAGATTCTGCGAATATGCGGAATACTTTCCATATGAGTTGCGAAGTCATTATGAA 128 Query 112 AGTGCTAATGAATTGTTTGGCACGCCAAATATCATTAAGATGATGAGGCATGTTCCCGAA 171 ||| ||||||||||||||||||| ||||| |||||||||||||||||||||| ||| ||| Sbjct 129 AGTACTAATGAATTGTTTGGCACACCAAAGATCATTAAGATGATGAGGCATGCTCCTGAA 188 Query 172 GaaaaaaaaCAAATACTAGCAACTTCCATAATCATGGAAGGTAATGCTTGGACAAAGGAT 231 |||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||| Sbjct 189 GAAAAAAAACAAATGCTTGCAACTTCCATAATCATGGAAGGTAATGCTTGGACAAATGAT 248 Query 232 CCTATATATAAGTGGTGGATTCGGTGTGATGCAAAAGCTCATTTGGAAGATTATG 286 ||| || | |||||||||| ||| || |||||||| |||| |||||||||||| Sbjct 249 CCTGTA-A---GTGGTGGATTTGGTATGGTGCAAAAGATCATGTGGAAGATTATG 299 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 15683537688 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5