BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg480521

Length=336
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G36000.1 | Symbols: LBD5 | LOB domain-containing protein 5 |...   320    5e-87
  AT2G19510.1 | Symbols: LBD8 | LOB domain-containing protein 8 |...   276    1e-73


> AT1G36000.1 | Symbols: LBD5 | LOB domain-containing protein 5 
| chr1:13422554-13423028 FORWARD LENGTH=387
Length=387

 Score =  320 bits (173),  Expect = 5e-87
 Identities = 258/296 (87%), Gaps = 18/296 (6%)
 Strand=Plus/Plus

Query  1    ATGGAACCTCTAGGGAACCATCGTCCTTACTCTGTATGTATCACCAGAAACAAAAACTGT  60
            |||||||||||||| |||| |||||||| ||| ||||||||||||| ||||| ||| |||
Sbjct  14   ATGGAACCTCTAGGAAACCGTCGTCCTTGCTCCGTATGTATCACCAAAAACAGAAATTGT  73

Query  61   CCCCA-AAACTGCGAATATGCGA-AATATTTTCCATATAAATT------TCAATATGAAA  112
             |||| |  |||||||||||| | |||| ||||||||| ||||      |||||||||||
Sbjct  74   -CCCAGATTCTGCGAATATGC-AGAATACTTTCCATATGAATTGCAAAGTCAATATGAAA  131

Query  113  GTGCTAATGAATTGTTTGGCACGCCAAATATCATTAAGATGATG-AGGCATGTTCCCGAA  171
            |||||||||||||||||||||| ||||||||||||| ||||||| || |||| ||| |||
Sbjct  132  GTGCTAATGAATTGTTTGGCACACCAAATATCATTACGATGATGCAG-CATGCTCCTGAA  190

Query  172  GaaaaaaaaCAAATACTAGCAACTTCCATAATCATGGAAGGTAATGCTTGGACA-AAGGA  230
            |||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||| |
Sbjct  191  GAAAAAAAACAAATGCTAGCAACTTCTATAATCATGGAAGGTAATGCTTGGACAGAAG-A  249

Query  231  TCCTATATATAAGTGGTGGATTCGGTGTGATGCAAAAGCTCATTTGGAAGATTATG  286
            ||||||| |   |||||||||||||| |||| ||||||||||| ||||||||||||
Sbjct  250  TCCTATA-A---GTGGTGGATTCGGTATGATTCAAAAGCTCATGTGGAAGATTATG  301


> AT2G19510.1 | Symbols: LBD8 | LOB domain-containing protein 8 
| chr2:8453219-8453682 FORWARD LENGTH=380
Length=380

 Score =  276 bits (149),  Expect = 1e-73
 Identities = 249/295 (84%), Gaps = 16/295 (5%)
 Strand=Plus/Plus

Query  1    ATGGAACCTCTAGGGA-ACCATCGTCCTTACT-CTGTATGTATCACCAGAAACAAAAACT  58
            |||||||| ||| ||| | | |||||||| || | ||||||||||||| ||| | ||| |
Sbjct  12   ATGGAACCACTA-GGAGATCGTCGTCCTTGCTGC-GTATGTATCACCAAAAATAGAAATT  69

Query  59   GTCCCCA-AAACTGCGAATATGCGAAATATTTTCCATATAAATT------TCAATATGAA  111
            || || | |  ||||||||||||| |||| ||||||||| | ||      ||| ||||||
Sbjct  70   GT-CCTAGATTCTGCGAATATGCGGAATACTTTCCATATGAGTTGCGAAGTCATTATGAA  128

Query  112  AGTGCTAATGAATTGTTTGGCACGCCAAATATCATTAAGATGATGAGGCATGTTCCCGAA  171
            ||| ||||||||||||||||||| ||||| |||||||||||||||||||||| ||| |||
Sbjct  129  AGTACTAATGAATTGTTTGGCACACCAAAGATCATTAAGATGATGAGGCATGCTCCTGAA  188

Query  172  GaaaaaaaaCAAATACTAGCAACTTCCATAATCATGGAAGGTAATGCTTGGACAAAGGAT  231
            |||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||
Sbjct  189  GAAAAAAAACAAATGCTTGCAACTTCCATAATCATGGAAGGTAATGCTTGGACAAATGAT  248

Query  232  CCTATATATAAGTGGTGGATTCGGTGTGATGCAAAAGCTCATTTGGAAGATTATG  286
            ||| || |   |||||||||| ||| || |||||||| |||| ||||||||||||
Sbjct  249  CCTGTA-A---GTGGTGGATTTGGTATGGTGCAAAAGATCATGTGGAAGATTATG  299



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15683537688


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5