BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480522
Length=1580
Score E
Sequences producing significant alignments: (Bits) Value
AT2G19500.1 | Symbols: CKX2, ATCKX2 | cytokinin oxidase 2 | chr... 2257 0.0
AT4G29740.2 | Symbols: CKX4, ATCKX4 | cytokinin oxidase 4 | chr... 676 0.0
> AT2G19500.1 | Symbols: CKX2, ATCKX2 | cytokinin oxidase 2 | chr2:8444204-8447355
REVERSE LENGTH=1667
Length=1667
Score = 2257 bits (1222), Expect = 0.0
Identities = 1471/1588 (93%), Gaps = 30/1588 (2%)
Strand=Plus/Plus
Query 1 GTTATAATTCTCTTCTTC-AAAATCAAATCagagagagagagaACGaaaaaaaaaTAATG 59
||| |||||||||||||| ||||||||||||||||||||||||| | | ||| | ||||
Sbjct 1 GTTGTAATTCTCTTCTTCAAAAATCAAATCAGAGAGAGAGAGAA--ACATAAACA-AATG 57
Query 60 GCTAATCTTCGTCTAATAATCACAGTTTTGAT--TTGTTTATTCTCGAGCTTCACCAAAT 117
|||||||||||| |||| ||||| ||| || |||| | | || |||||||||
Sbjct 58 GCTAATCTTCGTTTAATGATCAC---TTTAATCACGGTTT-TAAT-GA---TCACCAAAT 109
Query 118 CATCAAACGTTATTAAAATTGATTTACCTAAATCTCTTAACCTCACCCTCTCCACCGATC 177
||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 110 CATCAAACGGTATTAAAATTGATTTACCTAAATCCCTTAACCTCACCCTCTCTACCGATC 169
Query 178 CTTCCATCATCTCCGCCGCCTCTCATGACTTCGGAAACATCACCACCGTGACCCCCGGCG 237
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 170 CTTCCATCATCTCCGCAGCCTCTCATGACTTCGGAAACATAACCACCGTGACCCCCGGCG 229
Query 238 GTGTTATCTGCCCTTCCTCCTCCGCCGATATATCTCGTCTCCTCCAATACGCCGCGAACG 297
| || |||||||| |||||| |||| ||||| ||||||||||||||||||||||| ||||
Sbjct 230 GCGTAATCTGCCCCTCCTCCACCGCTGATATCTCTCGTCTCCTCCAATACGCCGCAAACG 289
Query 298 GAAAAAGTACATTCCAAGTAGCGGCTCGTGGCCAAGGCCACTCCTTAAACGGCCAAGCCT 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 GAAAAAGTACATTCCAAGTAGCGGCTCGTGGCCAAGGCCACTCCTTAAACGGCCAAGCCT 349
Query 358 CCGTCTCCGGCGGAGTAATCGTCAACATGACATGTCTCACTAG-CGTGGTGGTTTCAAAA 416
| ||||||||||||||||||||||||||||| ||| ||||| | ||||||||||||||||
Sbjct 350 CGGTCTCCGGCGGAGTAATCGTCAACATGACGTGTATCACT-GACGTGGTGGTTTCAAAA 408
Query 417 GATAAGAAGTATGCTGACGTGGCGGCCGGGACGTTATGGGTAAATGTG-TTAAAGAAGAC 475
|| |||||||| ||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 409 GACAAGAAGTACGCTGACGTGGCGGCCGGGACGTTATGGGTGGATGTGCTT-AAGAAGAC 467
Query 476 GGCGGAGGAAGGGGTGTCGCCGGTTTCTTGGACGGATTATTTGCATATAACCGTCGGAGG 535
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 GGCGGAGAAAGGGGTGTCGCCGGTTTCTTGGACGGATTATTTGCATATAACCGTCGGAGG 527
Query 536 AACGTTGTCGAATGGTGGCATCGGTGGTCAAGTGTTTCGAAACGGTCCTCTTATTAGGAA 595
|||||||||||||||||| || |||||||||||||||||||||||||||||| |||| ||
Sbjct 528 AACGTTGTCGAATGGTGGAATTGGTGGTCAAGTGTTTCGAAACGGTCCTCTTGTTAGTAA 587
Query 596 CGTCCTTGAATTGGACGTTATAACTGGGAAAGGGGAAGTGTTGACATGCTCGCGACAGCT 655
||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||
Sbjct 588 CGTCCTTGAATTGGACGTTATTACTGGGAAAGGTGAAATGTTGACATGCTCGCGACAGCT 647
Query 656 AAATCCAGAATTGTTCTATGGAGTTTTAGGAGGTTTAGGTCAATTTGGAATTATAACGAG 715
||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 648 AAACCCAGAATTGTTCTATGGAGTGTTAGGAGGTTTGGGTCAATTTGGAATTATAACGAG 707
Query 716 AGCCAGAATTGTTTTGGACCATGCACCTAAAAGGGCCAAATGGTTTCGGATGCTCTACAG 775
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 708 AGCCAGAATTGTTTTGGACCATGCACCTAAACGGGCCAAATGGTTTCGGATGCTCTACAG 767
Query 776 TGACTTCACAACTTTTACGAAGGACCAAGAACGTTTGATATCAATGGTC-AATGATATTG 834
||| |||||||||||||| |||||||||||||||||||||||||||| | || |||||||
Sbjct 768 TGATTTCACAACTTTTACAAAGGACCAAGAACGTTTGATATCAATGG-CAAACGATATTG 826
Query 835 GAGTTGACTATTTAGAAGGTCAAATATTTCTATCAAACGGCGTCGTAGATACCTCTTTTT 894
|||| ||||||||||||||||||||||||||||||||||| ||||| || ||||||||||
Sbjct 827 GAGTCGACTATTTAGAAGGTCAAATATTTCTATCAAACGGTGTCGTTGACACCTCTTTTT 886
Query 895 TCCCACCGTCCGACCAATCTAAAGTCGCTGACT-TAGTGAAAG-AGCACGGTGTCATTTA 952
||||||| || || ||||||||||||||||| | |||| ||| | |||||| |||| ||
Sbjct 887 TCCCACCTTCAGATCAATCTAAAGTCGCTGA-TCTAGT-CAAGCAACACGGTATCATCTA 944
Query 953 TGTTCTTGAAGTAGCCAAGTATTATGATGATCCCAATCTTCCCATCATAAGCAAGGTTAT 1012
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 945 TGTTCTTGAAGTAGCCAAGTATTATGATGATCCCAATCTCCCCATCATCAGCAAGGTTAT 1004
Query 1013 TGACACATTAACGAAAAGC-TTAAGTTACTTGCCCGGGTTCATATCGATGCATGATGTCC 1071
||||||||||||||||| | |||||||||||||||||||||||||| ||||| || ||
Sbjct 1005 TGACACATTAACGAAAA-CATTAAGTTACTTGCCCGGGTTCATATCAATGCACGACGTGG 1063
Query 1072 CCTACTTCGATTTCTTGAACCGTGTACAAGTCGAAGAAAACAAACTCAGATCATTGGGGT 1131
|||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| |
Sbjct 1064 CCTACTTCGATTTCTTGAACCGTGTACATGTCGAAGAAAATAAACTCAGATCTTTGGGAT 1123
Query 1132 TATGGGAAGTTCCTCATCCATGGCTTAACCTCTACGTTCCTAAATCTCGGATTCGT-GAT 1190
|||||||| |||||||||| |||||||||||||||||||||||||||||||||| | |||
Sbjct 1124 TATGGGAACTTCCTCATCCTTGGCTTAACCTCTACGTTCCTAAATCTCGGATTC-TCGAT 1182
Query 1191 TTTCATGACGGTGTTGTCAAAGACATTCTTCTTAAGCAAAAAACAGCTTCGGGACTCGCT 1250
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1183 TTTCATAACGGTGTTGTCAAAGACATTCTTCTTAAGCAAAAATCAGCTTCGGGACTCGCT 1242
Query 1251 CTCCTCTATCCCACAAACCGAAATAAATGGGACAATCGTATGTCCGCGATGATACCAGAG 1310
|| |||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1243 CTTCTCTATCCAACAAACCGGAATAAATGGGACAATCGTATGTCGGCGATGATACCAGAG 1302
Query 1311 ATCGATGAAGATGTTATCTATATAATCGGACTGCTACAATCCGCTACGCCACAGAAT-TT 1369
||||||||||||||||| ||||| |||||||| |||||||||||||| ||| || || ||
Sbjct 1303 ATCGATGAAGATGTTATATATATTATCGGACTACTACAATCCGCTACCCCAAAGGATCTT 1362
Query 1370 GCCAGAAATGGAGAGCGTTAACGAGGAGATAATTAGGTTTTGCAAGGATTCAGGTATTAA 1429
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1363 -CCAGAAGTGGAGAGCGTTAACGAGAAGATAATTAGGTTTTGCAAGGATTCAGGTATTAA 1421
Query 1430 GATTAAGCAATATCTAATGCATTACACTAGAAAAGAAGATTGGATTGAGCATTTTGGATC 1489
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1422 GATTAAGCAATATCTAATGCATTATACTAGTAAAGAAGATTGGATTGAGCATTTTGGATC 1481
Query 1490 AAAATGGGATGATTTTTCGAAGAGGAAAGATCTATTTGATCCCAAGAAACTGTTATCTCC 1549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1482 AAAATGGGATGATTTTTCGAAGAGGAAAGATCTATTTGATCCCAAGAAACTGTTATCTCC 1541
Query 1550 AGGACAAGACATCTTTTGATTAACGTAA 1577
||| |||||||||||||||||||| |||
Sbjct 1542 AGGGCAAGACATCTTTTGATTAACTTAA 1569
> AT4G29740.2 | Symbols: CKX4, ATCKX4 | cytokinin oxidase 4 | chr4:14566265-14569332
FORWARD LENGTH=1861
Length=1861
Score = 676 bits (366), Expect = 0.0
Identities = 915/1174 (78%), Gaps = 62/1174 (5%)
Strand=Plus/Plus
Query 429 GCTGACGTGGCGGCCGGGACGTTATGGGTAAATGTGTTAAAGAAGACGGCGGAGGA-AG- 486
||||||||||| ||||||||| | ||||| | |||| |||| |||||| ||| ||
Sbjct 522 GCTGACGTGGCTGCCGGGACGATGTGGGTGGA--TGTT-CTGAAGGCGGCGGTGGATAGA 578
Query 487 GG-GTGTCGCCGGTTTCTTGGACGGATTATTTGCATATAACCGTCGGAGGAACGTTGTCG 545
|| || ||||||||| | ||||||||||||||| || | | |||||| || |||||||||
Sbjct 579 GGCGTCTCGCCGGTTACATGGACGGATTATTTGTATCTCAGCGTCGGCGGGACGTTGTCG 638
Query 546 AATGGTGGCATCGGTGGTCAAG-TGTTTCGAAACGGTCCTCTTATTAGGAACGTCCTTGA 604
|| | ||| |||||||||| || |||| || |||| |||| ||||| ||||| | |||
Sbjct 639 AACGCTGGAATCGGTGGTC-AGACGTTTAGACACGGCCCTCAGATTAGTAACGTTCATGA 697
Query 605 -ATTGGACGTTATAACTGGGAAAGGGGAAGTGTTGACATGCTCGCGACAGCTAAATCCAG 663
|| |||||||| || || ||||| ||| || |||| ||||| | | || |||| || |
Sbjct 698 GCTT-GACGTTATTACCGGAAAAGGTGAAATGATGACTTGCTCTCCAAAGTTAAACCCTG 756
Query 664 AATTGTTCTATGGAGTTTTAGGAGGTTTAGGTCAATTTGGAATTATAACGAGAGCCAGAA 723
|||||||||||||||||||||||||||| |||||||| || ||||||||||| ||||| |
Sbjct 757 AATTGTTCTATGGAGTTTTAGGAGGTTTGGGTCAATTCGGTATTATAACGAGGGCCAGGA 816
Query 724 TTGTTTTGGACCATGCACCTAAAAGGGCCAAATGGTTTCGGATGCTCTACAGTGACTTCA 783
||| ||||| |||||||| | ||||| ||||||| ||| || |||||||||||||||
Sbjct 817 TTGCGTTGGATCATGCACCCACAAGGGTGAAATGGTCTCGCATACTCTACAGTGACTTCT 876
Query 784 CAACTTTTACGAAG-GACCAAGAACGTTTGATATCAATGGTCAATGATATTGGAGTTGAC 842
| |||||| ||| |||||||| ||||| ||||||||| ||||||| | |||||||||
Sbjct 877 CGGCTTTTAA-AAGAGACCAAGAGCGTTTAATATCAATGACCAATGATCTCGGAGTTGAC 935
Query 843 TATTTAGAAGGTCAAAT-ATTTCTATCAAACGGCGTCGTAGATACCTCTTTTTTCCCAC- 900
| ||| ||||||||| | || | ||||| ||| ||||||| |||||||| |||||||
Sbjct 936 TTTTTGGAAGGTCAACTTATGA-TGTCAAATGGCTTCGTAGACACCTCTTTCTTCCCACT 994
Query 901 CGTCCGACCAATCTAA-AGTCGC-TGACTTAGTGAAAGAGCAC-GGTGTCATTTATGTTC 957
| ||||| ||| | || |||||| | ||| ||||| || ||| || |||| |||||||
Sbjct 995 C-TCCGATCAAAC-AAGAGTCGCATCTCTT-GTGAATGACCACCGGA-TCATCTATGTTC 1050
Query 958 TTGAAGTAGCCAAGTATTATGAT-GATCCCAATCTTCCCATCATA-AGCAAGGTTATTGA 1015
| |||||||||||||||||||| || || | |||||||| || | || ||| |||||
Sbjct 1051 TCGAAGTAGCCAAGTATTATGACAGAACC-ACCCTTCCCATTATTGACCA-GGTGATTGA 1108
Query 1016 CACATTAACGAA-AAGCT-TAAGTTACTTGC-CC-GGGTTCATAT-CGATGCATGATGTC 1070
||| |||| | | || || || ||| | || || ||||| || | || | || |||||
Sbjct 1109 CACGTTAA-GTAGAA-CTCTAGGTTTC--GCTCCAGGGTTTATGTTCG-TACAAGATGTT 1163
Query 1071 CCCTACTTCGATTTCTTGAACCGTGTAC-AAGTCGAAGAAAACAAACTCAGATCATTGGG 1129
|| || |||||||||||||||||||| | || ||||||| | ||||||||||| || ||
Sbjct 1164 CCGTATTTCGATTTCTTGAACCGTGTCCGAAA-CGAAGAAGATAAACTCAGATCTTTAGG 1222
Query 1130 GTTATGGGAAGTTCCTCATCCATGGCTTAACCTCTACGTTCCTAAATCTCGGATTCGTGA 1189
||||||||||||||||||||||||||||| ||| || || ||||| || | ||
Sbjct 1223 ACTATGGGAAGTTCCTCATCCATGGCTTAACATCTTTGTCCCGGGGTCTCGAATCCAAGA 1282
Query 1190 TTTTCATGACGGTGTTGTCAAAGACATTCTTCTTAAGCAAAAAACAGCTTCGGGACTCGC 1249
||||||||| |||||| | || | | ||||||| || |||| || |||| || | |
Sbjct 1283 TTTTCATGATGGTGTTATTAATGGCCTTCTTCTAAACCAAACCTCAACTTCTGGTGTTAC 1342
Query 1250 TCTCCTCTATCCCACAAACCGAAATAAATGGGACAATCGTATGTCCGCGATGATACCAGA 1309
|||| ||||||||||||||||||| |||||| |||| || ||||| |||||| ||| |
Sbjct 1343 TCTCTTCTATCCCACAAACCGAAACAAATGGAACAACCGCATGTCAACGATGACACC-G- 1400
Query 1310 GATCGATGAAGATGTTATCTATATAATCGGACTGCTACAATCCGCTAC-GC--CACAGAA 1366
|| ||| | |||||| | ||| | |||||| | || ||||| ||| | | || ||
Sbjct 1401 GA-CGA--A-GATGTTTTTTATGTGATCGGATTACTGCAATCAGCTGGTGGATCTCAAAA 1456
Query 1367 TTTGCCAGAAATGGAGAG-CGTTAACGAGGAGATAATT-AGGTTT-TGCAAGGATTCAGG 1423
|| || |||| | || | | | ||||| || | ||| || ||| || || | || ||
Sbjct 1457 TTGGCAAGAACTTGAAAATC-TCAACGACAAGGTTATTCAGTTTTGTGAAA--ACTCGGG 1513
Query 1424 TATTAAGATTAAGCAATATCTAATGCATTACACTAGAAAAGAAGATTGGATTGAGCATTT 1483
|||||||||||| ||||| | ||||| || || ||||||||||||||| || | |||||
Sbjct 1514 AATTAAGATTAAGGAATATTTGATGCACTATACAAGAAAAGAAGATTGGGTTAAACATTT 1573
Query 1484 TGGATCAAAATGGGATGATTTTTCGAAGAG-GAAAGATCTAT-TT-GATCCCAAGAA-AC 1539
|||| |||||||||||||||||| |||| |||| || ||| || |||||||| || ||
Sbjct 1574 TGGACCAAAATGGGATGATTTTTT-AAGAAAGAAA-AT-TATGTTTGATCCCAA-AAGAC 1629
Query 1540 TGTTATCTCCAGGACAAGACATCTTTTGATTAAC 1573
| || ||||||||||||||||| ||| ||||||
Sbjct 1630 TATTGTCTCCAGGACAAGACATATTTA-ATTAAC 1662
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78011646930
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5