BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480524
Length=1486
Score E
Sequences producing significant alignments: (Bits) Value
AT2G19480.1 | Symbols: NFA02, NFA2, NAP1;2 | nucleosome assembl... 2069 0.0
> AT2G19480.1 | Symbols: NFA02, NFA2, NAP1;2 | nucleosome assembly
protein 1;2 | chr2:8438456-8441348 FORWARD LENGTH=1593
Length=1593
Score = 2069 bits (1120), Expect = 0.0
Identities = 1420/1552 (91%), Gaps = 71/1552 (5%)
Strand=Plus/Plus
Query 1 TTATTTCGGTGTGGTCATTTTCTCGAAGCCCTTTTATTTATATATAAATATATTTCTTTT 60
|||||||||| ||||||||||||| ||||||||||| |||| |||| ||||| |||| |
Sbjct 6 TTATTTCGGTCTGGTCATTTTCTCAAAGCCCTTTTAGTTATTTATATATATA-TTCTCTG 64
Query 61 TCTCTTATTAGTCCCCAAAAATCTAGGGTTTTAAGGTTTCTTATCCTTCCTCTTCCTCCG 120
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 65 TCTCGTATTTGTCCCCAAAAATCTAGGGTTTTAAGGTTTCTTATCCTTCCTCTTCCTCCG 124
Query 121 CCAGATTCTTTTCTTGCGAAGATGAGCAACGACAAGGACAACATGAACATGTCCGATCTC 180
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 125 CCAGATTCTTTTCTTGCGAAGATGAGCAACGACAAGGACAGCATGAACATGTCCGATCTC 184
Query 181 AACGCCGCTCTTAACGAGGAGAATCGTGCCGGGCTTGTTAATGCTCTTAAGAACAAGTTG 240
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 185 TCCACCGCTCTTAACGAGGAGGATCGTGCCGGGCTTGTTAATGCTCTTAAGAACAAGTTG 244
Query 241 CAGAATTTGGCTGGACAACACTCTGATGTCCTTGAAAACTTGACTCCAACAGTCAGGAAG 300
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 245 CAGAATTTGGCTGGACAACACTCTGATGTCCTTGAAAACTTGACTCCACCAGTCAGGAAG 304
Query 301 CGTGTGGAGGTTCTAAGGGAGATTCAGAACCAATATGATGAAATGGAAGCAAAATTCTTC 360
||||| ||| ||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 305 CGTGTCGAGTTTCTAAGAGAGATTCAGAACCAATATGATGAGATGGAAGCAAAATTCTTT 364
Query 361 GAGGAAAGGGCAGCTCTGGAAGCGAAATATCAAAAGTTATATCAGCCTTTATATACCAAG 420
||||| || |||||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 365 GAGGAGAGAGCAGCTCTTGAAGCTAAGTATCAAAAGTTATATCAGCCTTTATATACCAAG 424
Query 421 CGATATGAGATTGTGAATGGTGTGGTCGAAGTTGAAGGTGCAGGGGAAGATGTAAAATCT 480
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 425 CGATATGAGATTGTGAATGGTGTGGTCGAAGTTGAAGGTGCAGCTGAAGAAGTAAAATCC 484
Query 481 GAACAAGGAGAAGACAAAGCAGAAGCAGAGAAAGGAGTGCCAGATTTTTGGCTTATTGCA 540
|||||||||||||| ||| ||| | |||||||||||| |||||||| ||||||||||||
Sbjct 485 GAACAAGGAGAAGATAAATCAGCTGAAGAGAAAGGAGTACCAGATTTCTGGCTTATTGCA 544
Query 541 TTGAAGAACAATGAAATTACTGCTGAGGAGGAGATAACTGAGCGAGATGAAGGGGCTCTC 600
||||||||||||||||||||||| || || |||||||||||||||||||||||||||||
Sbjct 545 TTGAAGAACAATGAAATTACTGCGGA--AG-AGATAACTGAGCGAGATGAAGGGGCTCTC 601
Query 601 AAGTATCTTAAAGATATCAAGTGGAGTAGGGTTGAAGAACCAAAAGGGTTCAAGCTTGAG 660
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 AAGTATCTCAAAGATATCAAGTGGAGTAGGGTTGAAGAACCAAAAGGGTTCAAGCTTGAG 661
Query 661 TTTTTCTTTGATCAGAACCCTTACTTCAAGAACACTGTCTTGACCAAGACATATCACATG 720
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 TTTTTCTTTGATCAGAATCCTTACTTCAAGAACACTGTCTTGACCAAGACATATCACATG 721
Query 721 ATTGATGAAGATGAGCCTATCCTTGAGAAGGCCCTCGGGACCGAGATTGAGTGGTATCCT 780
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 722 ATTGATGAAGATGAGCCTATCCTTGAGAAGGCCCTCGGGACGGAGATTGAGTGGTATCCT 781
Query 781 GGAAAGTGTTTGACTCAGAAGATTCTAAAAAAGAAGCCAAAGAAAGGATCCAAAAACACA 840
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 GGAAAGTGTTTGACACAGAAGATTCTAAAAAAGAAGCCAAAGAAAGGATCCAAAAACACA 841
Query 841 AAGCCGATCACTAAGACTGAGGACTGTGAGAGTTTCTTCAACTTTTTCAGTCCACCTCAA 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 AAGCCGATCACTAAGACTGAGGACTGTGAGAGTTTCTTCAACTTTTTCAGTCCACCTCAA 901
Query 901 GTTCCTGACGATGATGAGGATCTTGATGATGATATGGCTGATGAACTTCAAGGCCAAATG 960
|||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 902 GTTCCTGACGATGATGAGGATCTTGATGATGACATGGCTGATGAACTCCAAGGACAAATG 961
Query 961 GAGCACGACTATGATATCGGGTCAACAATTAAAGAGAAAATCATCTCGCATGCTGTGTCA 1020
||||| || ||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 962 GAGCATGATTATGATATCGGTTCAACAATCAAAGAGAAAATCATCTCGCATGCTGTGTCA 1021
Query 1021 TGGTTCACTGGTGAAGCTGttgaggcagatgaccttgatattgaggaggacgatgatgag 1080
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1022 TGGTTCACTGGTGAAGCTGTTGAGGCAGATGACCTTGATATTGAGGACGACGATGATGAG 1081
Query 1081 attgatgaagatgatgatga------cgaggaagatgatgaggatgacgaggaggatgat 1134
|||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 1082 ATTGATGAAGATGATGATGAAGAGGACGAGGAAGATGATGAGGATGACGAGGAGGAGGAT 1141
Query 1135 gatgaggatgatgacgaggaggaagaagcagatcaaggaaagaagagcaaaaagaag--a 1192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1142 GATGAGGATGATGACGAGGAGGAAGAAGCAGATCAAGGAAAGAAGAGCAAAAAGAAGTCA 1201
Query 1193 --ag--g--c----------tggaagaagTCAACCTGCGGAAGGTCAAGCAGGTGAGAGG 1236
|| | | |||||||||||||| |||||||||||||||||||||||||
Sbjct 1202 TCAGCTGGGCACAAGAAGGCTGGAAGAAGTCAACTTGCGGAAGGTCAAGCAGGTGAGAGG 1261
Query 1237 CCACCGGAATGCAAGCAGCAGTGAAGAACTGAAGAATCTTGGCTTA-TC-T-ATGAAGAA 1293
||||||||||| |||||||||||||||| ||||||||||||||||| | | ||||||||
Sbjct 1262 CCACCGGAATGTAAGCAGCAGTGAAGAAGTGAAGAATCTTGGCTTAGTTATGATGAAGAA 1321
Query 1294 GAAG--T---------CTTTGAGCCGAGGTTGTGTTTCTT-AATTTGCAGAGTCATGGTC 1341
|||| | |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1322 GAAGAGTGAAGAGTGTCTTTGAGCCGAGGTTGTGTTTCTTTAATTTGCAGAGTCATGGTC 1381
Query 1342 CGGTTAATTATATATCAgttttgggtggttggtttgct-ttt-------------gg-tt 1386
||||| ||||||||||||||||||||| |||||||||| ||| || ||
Sbjct 1382 CGGTTTATTATATATCAGTTTTGGGTGATTGGTTTGCTATTTAAAAAAAAAAAATGGGTT 1441
Query 1387 -t--ggtttg-t--gt--ctcttgatttttcattt-gTAATGTTCTTATGAATTTGATTT 1437
| |||||| | || ||||||||||||| ||| |||||| ||||||||||||| |||
Sbjct 1442 CTTTGGTTTGGTTTGTGTCTCTTGATTTTTCCTTTTGTAATGATCTTATGAATTTG-TTT 1500
Query 1438 -GAGTTAATGTCGTTCT--GGTCAGATTTCGAATCCAATTTTATTTATTCTC 1486
|||||||||||||||| ||||||||||||||| ||||| ||||||| |||
Sbjct 1501 CGAGTTAATGTCGTTCTCTGGTCAGATTTCGAATTCAATTCTATTTATCCTC 1552
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73292795700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5