BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg480527

Length=550
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G19460.1 | Symbols:  | Protein of unknown function (DUF3511)...   750    0.0  


> AT2G19460.1 | Symbols:  | Protein of unknown function (DUF3511) 
| chr2:8431482-8432105 FORWARD LENGTH=624
Length=624

 Score =  750 bits (406),  Expect = 0.0
 Identities = 493/531 (93%), Gaps = 22/531 (4%)
 Strand=Plus/Plus

Query  1    aaaaaaa-aaTGTCATTCGTCAACTTTATTACAAAACCCTCTCACACACCAATCCCATCA  59
            ||||||| ||  ||||||||| |||||||||||||||||||||||| | | |  ||||||
Sbjct  16   AAAAAAAGAA-ATCATTCGTCGACTTTATTACAAAACCCTCTCACA-A-C-A--CCATCA  69

Query  60   cttcttcttcttcttctGTCTGAGAGTCCAAAATGGAAGACTTCAGATCCAGATCGTACG  119
            |||||||||| ||||||||||  ||||||||||||||||||| |||||||||||||||||
Sbjct  70   CTTCTTCTTCGTCTTCTGTCT--GAGTCCAAAATGGAAGACTACAGATCCAGATCGTACG  127

Query  120  GTGACGGAAGAACATCAGACCTTCAACAGTATTCAGCTCACCGAAGATCCGACGGTCCAG  179
            ||||||| |||||||||||||||||||| || || |||||||||||||||||||||||||
Sbjct  128  GTGACGGGAGAACATCAGACCTTCAACAATACTCTGCTCACCGAAGATCCGACGGTCCAG  187

Query  180  ATTCATTCAGTGGTAACGGTATGCAAGATCTTAGGTCTTACAGTACTTCCTACACAGATT  239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  188  ATTCATTCAGTGGTAACGGTATGCAAGATCTTAGGTCTTACAGTACTTCCTACACAGATT  247

Query  240  ACCCGACCCGGATACCGGAAGACCCGAACCCGAAGAAAGGAAGATCATCTTCATCGTCTT  299
            |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct  248  ACCCGACCCGGATACCCGAAGACCAGAACCCGAAGAAAGGAAGATCATCTTCATCGTCTT  307

Query  300  CTTGGGGATTTGTGGATCCAGATTTACAAAGGAAGAAGAGAGTTGTTAGTTACAGAGCTT  359
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  308  CTTGGGGATTTGTGGATCCAGATTTACAAAGGAAGAAGAGAGTTGTTAGTTACAGAGCTT  367

Query  360  ATACTGTTGAAGGTAAGCTTAAAGGTTCTTTCAGGAAAAGCTTCAAATGGATCAAAGATA  419
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  368  ATACTGTTGAAGGTAAGCTTAAAGGTTCTTTCAGAAAAAGCTTCAAATGGATCAAAGATA  427

Query  420  AATGCAACAAATTACTTAATTAAT-CATGTCAAATCTGTTTTA--TAAGATAATAAACTT  476
            |||||||||||||||||||||||| | |||||||| |||||||  |||||||||||||||
Sbjct  428  AATGCAACAAATTACTTAATTAATTC-TGTCAAATGTGTTTTACATAAGATAATAAACTT  486

Query  477  TTTT-ATATTCGAT-G----AGTTTCAAttttttttttt-t-tGTGTGTGT  519
            || | |  |||||| |    ||||||||| ||||||| | | |||||||||
Sbjct  487  TTGTCAC-TTCGATCGGTTGAGTTTCAATCTTTTTTTGTGTATGTGTGTGT  536



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26372927175


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5