BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480529
Length=1307
Score E
Sequences producing significant alignments: (Bits) Value
AT2G19430.1 | Symbols: DWA1, THO6, AtTHO6 | DWD (DDB1-binding W... 1988 0.0
> AT2G19430.1 | Symbols: DWA1, THO6, AtTHO6 | DWD (DDB1-binding
WD40 protein) hypersensitive to ABA 1 | chr2:8415159-8417960
FORWARD LENGTH=1382
Length=1382
Score = 1988 bits (1076), Expect = 0.0
Identities = 1248/1328 (94%), Gaps = 24/1328 (2%)
Strand=Plus/Plus
Query 1 AGTTTCACC-GGAAGTTGCAAAGAAGCAGAGGAATATGTACGGAGGCGCCACTAACTGGA 59
||| ||||| |||| |||||||||||||||||| |||||||||| ||| || |||||||
Sbjct 25 AGTATCACCGGGAA-TTGCAAAGAAGCAGAGGACCATGTACGGAGACGCTACAAACTGGA 83
Query 60 ACGAAGATGAGTATAGAGAATCAATATTGAAGGAGCGAGAGATACAAACACGTACCGTAT 119
| ||||||||||||||||||||||| |||||||||||||||||| | ||||| ||||| |
Sbjct 84 ATGAAGATGAGTATAGAGAATCAATTTTGAAGGAGCGAGAGATAGAGACACGCACCGTCT 143
Query 120 TCAGAACCGCCTGGGCTCCTCCGGAGAGAATCTCTAATCCAGACGCATTTGTTGTCGCTT 179
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |
Sbjct 144 TCAGAACCGCCTGGGCTCCTCCGGCGAGAATCTCTAATCCAGACGCATTTGTTGTAGCCT 203
Query 180 CCAGCGATGGAACTTTAGCTTTCCATTCTCTGAACTCGCTTGTGTCTCAATCGGCGAGTT 239
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 204 CCAGCGATGGAACTTTAGCTTTCCATTCACTGAACTCGCTTGTGTCTCAATCGGCGAGTT 263
Query 240 TTGGCTACTCGAAAGGTCAGGATGTTATGGTGGCTGAGCCTGAGAGAGTGGTTAGGGCTC 299
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
Sbjct 264 TTGGCTACTCGAAAGGTCAAGATGTTATGGTGGCTGAACCTGAGAGAGTGGTTAGGGCAC 323
Query 300 ATGATGGCCCTGCTTATGATGTTAAGTTCTATGGTGAAGACGAAGATGCTTTGCTACTTA 359
| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 324 ACGAAGGTCCTGCTTATGATGTTAAGTTCTATGGTGAAGACGAAGATGCTTTGCTACTTA 383
Query 360 GTTGTGGTGATGATGGTAGAGTTTGGGGATGGAAATGGAGAGAATTTGCTGAATCAGA-G 418
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 384 GTTGTGGTGATGATGGTAGAGTTAGGGGATGGAAATGGAGAGAATTTGCTGAATCAGATG 443
Query 419 ATGTCTCTTCATTTGCAAGAGAATCATGTGAAGCCATTGCTTGAATTGACTAATCCACAA 478
|||||||||||||| ||||||||||| ||||||||||||||||| ||| ||||||||||
Sbjct 444 -TGTCTCTTCATTTGAAAGAGAATCATCTGAAGCCATTGCTTGAACTGATTAATCCACAA 502
Query 479 CACAAAGGTCCTTGGGGTGCTCTTTCACCGATGCCTGAGATCAATGCCATGTCTGTTGAT 538
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 503 CACAAAGGTCCTTGGGGTGCGCTTTCACCGATGCCTGAGATCAATGCCATGTCTGTTGAT 562
Query 539 CCTCAGTCAGGAAGTGTATTTACGGCAGCTGGTGATTCTTGCGCATATTGTTGGGACGTG 598
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 563 CCTCAGTCAGGAAGTGTATTTACAGCAGCTGGTGATTCTTGCGCATATTGTTGGGACGTG 622
Query 599 GAGAGTGGTAATATCAAAATGACCTTCAAGGGGCATTCAGACTATTTGCATACTGTAGTT 658
||||||||||| || ||||||||||| || || |||||||||||||||||||||||||||
Sbjct 623 GAGAGTGGTAAGATTAAAATGACCTTTAAAGGTCATTCAGACTATTTGCATACTGTAGTT 682
Query 659 TCTCGTAGTTCTGCAAGTCAGATATTGACGGGTTCAGAGGATGGGACTGCGAGAATCTGG 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 683 TCTCGTAGTTCTGCAAGTCAGATATTGACGGGTTCAGAGGATGGGACTGCGAGAATCTGG 742
Query 719 GATTGCAAAACGGGGAAATGTGTTAAAGTAATTGGTTCCCAGGATAAAAAGTCCCGCCTT 778
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 743 GATTGCAAAACGGGAAAATGTGTTAAAGTAATTGGTTCCCAGGATAAAAAGTCCCGCCTT 802
Query 779 CGCGTTAGTTCTATGGCCCTTGATGGAAGTGAAAGCTGGTTGGTTTGTGGCCAGGGCAAA 838
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 803 CGCGTTAGTTCTATGGCCCTTGATGGGAGTGAAAGCTGGTTGGTTTGTGGACAGGGCAAA 862
Query 839 AATTTAGCTTTATGGAATCTTCCTGCCTCAGAATGCGTATC-AACAATATCCATCCCTGC 897
||||||||||||||||||||||| ||||||||||||||| | ||||||| ||||||||||
Sbjct 863 AATTTAGCTTTATGGAATCTTCCCGCCTCAGAATGCGTA-CAAACAATACCCATCCCTGC 921
Query 898 GCATGTACAGGATGTGATGTTTGATGAAAAGCAAATTTTGACTGTAGGAGCAGAACCAGT 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 922 ACATGTACAGGATGTGATGTTTGATGAAAAGCAAATTTTGACTGTAGGAGCAGAACCACT 981
Query 958 TCTAAGACGTTTCGACTTAAATGGAGCTTTGCTTTCTCAAATTCACTGTGCTCCTTGTTC 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 982 TCTAAGACGTTTCGACTTAAATGGAGCTTTGCTTTCTCAAATTCACTGTGCTCCTTGTTC 1041
Query 1018 AGTATTTTCCATTTCCTTGCATCCAGCAGGAGTAGTTGCTGTGGGAGGTTATGGCGGTCT 1077
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1042 AGTATTTTCCATTTCCTTGCATCCAGCAGGAGTAGTTGCTGTGGGAGGTTATGGAGGTAT 1101
Query 1078 TGTTGATGTCATCTCTCAATTCGGAAGTCATCTCTGCACATTTCGTAGCAGCTCATTGTG 1137
||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct 1102 TGTTGATGTCATCTCTCAATTTGGAAGCCATCTCTGCACATTTCGTAGCAGTTCATTGTA 1161
Query 1138 AAACTCCTTAC--T--CG-G-TATGGCTCGATACCCTAAAGAGGTACCAAAATGTGTCAG 1191
||||||||||| | | | | ||||||||||||||||||||||||| |||||||||||
Sbjct 1162 AAACTCCTTACAGTTTCTTGATTTGGCTCGATACCCTAAAGAGGTACCGAAATGTGTCAG 1221
Query 1192 TCAGATTATTG-A-A----------CCTTTGCTTTGTTTTCCTTAGGTTCTTGCTCCTGA 1239
||||||||||| | | ||||| ||||||||| |||||| ||||||||||||
Sbjct 1222 TCAGATTATTGCAGAGGTTAAGAAACCTTTTCTTTGTTTTTCTTAGGATCTTGCTCCTGA 1281
Query 1240 CTAAAGACCAAATAGTTGTTTGGTTCAGTGTAATTGGTTTGTGGTTCCGTAGTTGCTATC 1299
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1282 CTAAAGACCAATTAGTTGTTTGGTTAAGTGTAATTGGTTTGTGGTTCCGTAGTTGCTATC 1341
Query 1300 GAATTTGA 1307
|||||||
Sbjct 1342 AAATTTGA 1349
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64306898145
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5