BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480534
Length=1794
Score E
Sequences producing significant alignments: (Bits) Value
AT2G19380.1 | Symbols: | RNA recognition motif (RRM)-containin... 2361 0.0
> AT2G19380.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:8383856-8386604 FORWARD LENGTH=1842
Length=1842
Score = 2361 bits (1278), Expect = 0.0
Identities = 1675/1855 (90%), Gaps = 74/1855 (4%)
Strand=Plus/Plus
Query 1 ATGGTGTGGTTTCAGTGCGAAGATTGTGGCGAGAGTCTGAAGAAGCCAAGGCT-CTCGAG 59
|||||||||||||||||||| ||||||||||||| |||||||||||||||||| | ||||
Sbjct 1 ATGGTGTGGTTTCAGTGCGATGATTGTGGCGAGAATCTGAAGAAGCCAAGGCTAC-CGAG 59
Query 60 GCACTTGCGTATGTGCACTGCCACCAAGTTTTCTTGCATTGACTGTGGAAACATGTTTGG 119
||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 ACACATGAGTATGTGCACTGCCACCAAGTTTTCTTGCATTGACTGTGGAAACATGTTTGG 119
Query 120 GCAAGATAGTGTTTACTATCATAATCAATGCATCACCGAGGCTGAGAAGTATGGTCCAAA 179
||||| ||||||| ||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 120 GCAAGTTAGTGTTCACTATCATAATCAATGCATCACCGAAGCTGAGAAATATGGTCCAAT 179
Query 180 GGGGCTATCTAATGGCGAAAATTCGAAACAAAAGCACGATTTCGATATAAATACCGAGTT 239
|| || |||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 180 GGTGCGATCTAATGGCGAAAGTTCGAAACAAAAGCACGATTTCGATATAAATGCCGAGTT 239
Query 240 ATACAAGAGTCCTTCATGGTTTTGCAGCTTATGTAATGCAAATATGACCTGCGAGCAGGA 299
| ||| ||| | ||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 240 GTTCAACAGT-C--AATGGTTTTGTAGCTTATGTAATGCAACTATGACCTGCGAGCAGGA 296
Query 300 TTATTTTGCCCATGTCTATGGAAAGAAACACCAAGAGAAAGCAAATGAGGTTGCTGATAT 359
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 297 TTATTTTGCCCATGTCTATGGGAAGAAACACCAAGAGAAAGCAAATGAGGTTGCTGATAT 356
Query 360 GGACTACTCTAAACAACAATCTGAACAACCACCAGTTGACAAGCACAACTTAAAACAACA 419
||||||||| ||||||||||||||||| ||| ||||||||||| |||| |||| ||||||
Sbjct 357 GGACTACTCGAAACAACAATCTGAACATCCAGCAGTTGACAAGAACAATTTAACACAACA 416
Query 420 ACCCGACTTTGATATATATGTCGGGTTATCAAACCACTATCCATGGTTCTGTAGCTTGTG 479
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 417 ACCCGACTTAGATATATATGTCGGGTTATCAAACGACTATCCATGGTTCTGTAGCTTGTG 476
Query 480 TAACATAATGGCTACCAGCCAGCAGACTTTGTTATCACATGCCAATGGGAAGAAACACCG 539
| |||||| ||||||||| |||||||||||||| ||||||||||||| |||||||||||
Sbjct 477 TGACATAAACGCTACCAGCGAGCAGACTTTGTTAGCACATGCCAATGGCAAGAAACACCG 536
Query 540 AGCT-AATGTCGAATGGTTTGATGCTGAACAACAGCAACGACAAGT-AACACAACATTCC 597
|| | || || ||| | |||||||||||||||||| |||||||| | |||||||||||||
Sbjct 537 AG-TGAAAGTTGAACGTTTTGATGCTGAACAACAGAAACGACAA-TCAACACAACATTCC 594
Query 598 A----GGAT-----GGACAACTCAAAACAACAGATCGAAGTCGATATAAATGTTGGGTTA 648
| |||| |||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 595 ACGGTGGATAAGAAGGACTACTCAAAACAACAGATCGAAGTCGATATAAATGTCGGGTTA 654
Query 649 TCCAATTGTTATCCATGGTTTTGTAGCTTGTGTAACGTGAAGGCTACATGCCAGCAGAAT 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 TCCAATTGTTATCCATGGTTTTGTAGCTTGTGTAACGTGAAGGCTACATGCCAGCAGAAT 714
Query 709 TTGCTATCCCATGCCAATGGTAGAAAACACCGAGAAAATATCGAATTGTTTGATGCTACA 768
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 715 TTGCTATCCCATGCCAATGGCAGAAAACACCGAGAAAATGTCGAATTGTTTGATGCTACA 774
Query 769 CAACAACAACAGTTAGAAAAATCCT-CAGTGGATAAGAAGGATACAATTGAAAATGCTTC 827
||||||||||| ||||||||| || |||||||||| |||||||||| || ||||||||
Sbjct 775 CAACAACAACAATTAGAAAAA-ACTACAGTGGATAAAAAGGATACAACTGTCAATGCTTC 833
Query 828 TGATGGTAATTCCGAACAGAAGAGAGTAGATTTGCTTGTCTCATCAGGTGTTGCAAATGG 887
||||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||
Sbjct 834 GGATGGTAATTCCGAACAAAAGAAAGTAGATTTGCTTGTCTCCTCAGGTGTTGCAAATGG 893
Query 888 ATATCCTCAGGC-CGGCAAAAAGAGAAAGCTAGAGACTTTCGATGAAACACGGAACAGGG 946
|||| | ||||| | ||||||||||||||||||||| | |||||||||| |||| ||||
Sbjct 894 ATATTCACAGGCTC-ACAAAAAGAGAAAGCTAGAGACCTGCGATGAAACATGGAAAAGGG 952
Query 947 AGGTAGTTCAGGCCgaagaagcagaaggagggggtgag-aaaa-a--g---c-aag--ag 996
||||||||||||||||||||||| |||||||||||||| |||| | | | ||| ||
Sbjct 953 AGGTAGTTCAGGCCGAAGAAGCAAAAGGAGGGGGTGAGCAAAAGAGTGAATCAAAGAAAG 1012
Query 997 -----aa-taag----a-agaag--g-gaaagaaggaaaagaagCAGACTATGTCAGACT 1042
|| ||| | ||||| | |||||||||| ||||||||||||| ||||||||
Sbjct 1013 CCAAAAAGCAAGACAAAGAGAAGAAGAGAAAGAAGGACAAGAAGCAGACTAAGTCAGACT 1072
Query 1043 CTGATTTCGAGTATGACAAGGAAGATATCAAGCAGCTGTTGGTATCTTACTCGAAGGAAG 1102
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1073 CTGATTTCGAGCATGACAAGGAAGATATCAAGCAGCTGTTGGTAGCTTACTCGAAGGAAG 1132
Query 1103 AGCTTGTGAACCTCATATACAAGACTGCTGAGAAGGGTTCTCGATTGATCTCTGCCATCC 1162
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1133 AGCTTGTTAACCTCATATACAAGACTGCCGAGAAGGGTTCTCGATTGATCTCTGCCATCC 1192
Query 1163 TTGAATCGGCTGACCGTGACATCGCTCAGCGCAATATATTTGTGCGTGGCTTTGGATGGG 1222
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1193 TTGAGTCGGCTGACCGTGACATCGCTCAGCGCAATATATTTGTGCGTGGCTTTGGATGGG 1252
Query 1223 ACACAACGCATGAGAACCTCAAGGCGGCGTTTGAGACTTATGGGGAGATAGAGGAGTGCT 1282
|||||||||| |||||||||||| |||| |||||| ||||||||||||||||||||||||
Sbjct 1253 ACACAACGCAAGAGAACCTCAAGACGGCTTTTGAGTCTTATGGGGAGATAGAGGAGTGCT 1312
Query 1283 CGGTGGTCATGGACAAGGACACGGGAAGAGGTAAAGGGTATGGGTTTGTGCTGTTCAAGA 1342
|||| |||||||||||||||||||||||||||||||| || ||||||||| |||||||||
Sbjct 1313 CGGTAGTCATGGACAAGGACACGGGAAGAGGTAAAGGTTACGGGTTTGTGATGTTCAAGA 1372
Query 1343 CGCGGAAAGGAGCAAGAGAGGCATTGAAAAGACCGGAGAAGAGGATGTACAACCGCATCG 1402
| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 CACGGAAGGGAGCGAGAGAGGCATTGAAAAGACCGGAGAAGAGGATGTACAACCGCATCG 1432
Query 1403 TGGTATGTAATCTAGCATCAAAGAAGCCGT-CTGGGGCTGGAAAGGAGCAGGATATGGTT 1461
|||||||||||||||||||| |||||||| | || ||||||||||||||||||||| |
Sbjct 1433 TGGTATGTAATCTAGCATCAGAGAAGCCGGGCAAGG-CTGGAAAGGAGCAGGATATGGCT 1491
Query 1462 GAACCGGTGAAGATTGATCTAACTCA-GATGGCCAATCAAAGTGAAGCAGTCTTGCCCGG 1520
||||| ||||| ||||||||||| || |||||| ||||||||||||||||||||||||||
Sbjct 1492 GAACCAGTGAATATTGATCTAAC-CAAGATGGCTAATCAAAGTGAAGCAGTCTTGCCCGG 1550
Query 1521 TCCCGAACTGGGTCACGGACATGTACTCAAGAAGATGCACCACCAGCAACA---GACTAT 1577
||||||||||| ||||||||||||| |||||||||||||||| ||||| ||||||
Sbjct 1551 GATCGAACTGGGTCGCGGACATGTACTCGAGAAGATGCACCACCAACAACAACAGACTAT 1610
Query 1578 AGATATGTTCGGACAGAACATGCCTTTTTACGGACACTCTCATCAGTTTCCTGGTTTTGA 1637
|| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 1611 GGACATGTTCGGACAGAACATGCCTTTTTATGGATACTCTCATCAGTTTCCTGGTTTTGA 1670
Query 1638 TCCAATGTATGGTGCATTAAGTGGT---C---T---A-C----C-A--AA-CTATGGTAT 1679
||| ||||||||||||||||||||| | | | | | | || |||||||||
Sbjct 1671 TCCTATGTATGGTGCATTAAGTGGTAATCAAATGTTAGCTGGTCTACCAAACTATGGTAT 1730
Query 1680 GTTTGGCTCGGGTATGATGATGAACCAAGGATCGATGTTGCAGCCACCACCGAATCATTT 1739
|||||||||||||||||||| |||||||||||| ||||||| | |||||||||||||||
Sbjct 1731 GTTTGGCTCGGGTATGATGACGAACCAAGGATCAATGTTGC--C-ACCACCGAATCATTT 1787
Query 1740 AGGTATGGCAGGGCAATATTTTGGTGATGGGGGACATGCTTGGCATCAGAGGTAG 1794
||| |||||||||||||||||||||||||||| ||| |||||||||||||| |||
Sbjct 1788 AGGCATGGCAGGGCAATATTTTGGTGATGGGGAACAGGCTTGGCATCAGAGATAG 1842
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88754563560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5