BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480536
Length=630
Score E
Sequences producing significant alignments: (Bits) Value
AT2G19350.1 | Symbols: | Eukaryotic protein of unknown functio... 902 0.0
AT4G29860.1 | Symbols: EMB2757, TAN | Transducin/WD40 repeat-li... 403 9e-112
AT4G29850.1 | Symbols: | Eukaryotic protein of unknown functio... 403 9e-112
> AT2G19350.1 | Symbols: | Eukaryotic protein of unknown function
(DUF872) | chr2:8376202-8377343 FORWARD LENGTH=685
Length=685
Score = 902 bits (488), Expect = 0.0
Identities = 554/586 (95%), Gaps = 3/586 (1%)
Strand=Plus/Plus
Query 45 GACGTCGTTGTGATTCTAATCGTTTTCCGGTAAAATTGATTTCGGAGGCTATTCGATGGC 104
|||||||||||||||| |||| ||||||||| || || ||||||||||||||||||||||
Sbjct 73 GACGTCGTTGTGATTCAAATCTTTTTCCGGTGAACTTAATTTCGGAGGCTATTCGATGGC 132
Query 105 TTACGTCGACCATGCGTTCTCGATATCGGACGAAGACCTAATGATTGGGACTTCGTACAC 164
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 133 ATACGTCGACCATGCGTTCTCGATATCGGACGAAGACCTAATGATTGGGACTTCGTACAC 192
Query 165 CGTCAGTAATCGACCACCGGTGAAGGAGATCTCACTCGCGGTGGCTCTACTCGTATTCGG 224
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 193 CGTCAGTAATCGACCACCGGTGAAGGAGATCTCACTCGCGGTGGGTCTACTCGTATTCGG 252
Query 225 AACCCTAGGAATCGTTTCAGGTTTCTTCATGGCGTATAACCGAGTTGGTGGTGATCGAGG 284
|||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 253 AACCCTAGGAATTGTTTTAGGTTTCTTCATGGCGTATAACCGTGTTGGTGGTGATCGAGG 312
Query 285 TCACGGGATTTTCTTCATTGTACTCGGATGTCTTCTGTTTATCCCGGGGTTTTACTATAC 344
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 313 TCACGGGATTTTCTTCATTGTACTGGGATGTCTACTGTTTATCCCGGGGTTTTACTATAC 372
Query 345 ACGGATTGCATATTACGCTTACAAAGGATACAAAGGTTTCTCCTTCTCAAATATACCATC 404
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 373 ACGGATTGCATATTACGCTTACAAAGGATACAAAGGTTTCTCTTTCTCAAATATACCATC 432
Query 405 CGTTTAAGCCTTATGACTCGGTGTCTCTTCTCTCTTCTTACTCAATGTATAGGTTGTTTT 464
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 433 CGTTTAAGCCTTATGACTTGGTGTCTCTTCTCTCTT---ACTCAATGTATAGGTTGTTTA 489
Query 465 CGCTTATATTGCTTGACTTATTCTCTTTAGTGTGAGTTTACATGACTTGAATGACCCATG 524
|| || |||| |||||||||| ||||||||||||| |||||||||||||||||| |||||
Sbjct 490 CGTTTTTATTACTTGACTTATGCTCTTTAGTGTGATTTTACATGACTTGAATGAGCCATG 549
Query 525 TTTGATATATGTGTATCTCTTTTGGTTTCTCTTTCTCTATGTTAGATCATTAATCTTCGA 584
||||||| || |||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 550 TTTGATACATATGTATCTCTTTTGGTTTCTCCTTCTCTATGTTAGATCATTAGTCTTCGA 609
Query 585 TAACCATCCTTGTAAAATATAGAACAAGCTAATCACACGTGATGTA 630
|||||||||||||| ||| |||| ||||||||||||| ||||||||
Sbjct 610 TAACCATCCTTGTATAATGTAGACCAAGCTAATCACATGTGATGTA 655
> AT4G29860.1 | Symbols: EMB2757, TAN | Transducin/WD40 repeat-like
superfamily protein | chr4:14601698-14605796 REVERSE LENGTH=2011
Length=2011
Score = 403 bits (218), Expect = 9e-112
Identities = 281/312 (90%), Gaps = 2/312 (1%)
Strand=Plus/Plus
Query 100 ATGGCTTACGTCGACCATGCGTTCTCGATATCGGACGAAGACCTAATGATTGGGACTTCG 159
||||| |||||||||||||||||||||||| ||||||| ||| | ||||||| ||||||
Sbjct 1580 ATGGCGTACGTCGACCATGCGTTCTCGATAACGGACGAGGACATTATGATTGAGACTTCA 1639
Query 160 TACACCGTCAGTAATCGACCACCGGTGAAGGAGATCTCACTCGCGGTGGCTCTACTCGTA 219
|||||||||| ||| ||||| ||||||||||||||| |||||||||||||| |||||||
Sbjct 1640 TACACCGTCAATAACCGACCGCCGGTGAAGGAGATCGCACTCGCGGTGGCTTTACTCGTG 1699
Query 220 TTCGGAACCCTAGGAATCGTTTCAGGTTTCTTCATGGCGTATAACCGAGTTGGTGGTGAT 279
||||||||||||||||| || || |||||||||||||| ||||| |||||||| ||||||
Sbjct 1700 TTCGGAACCCTAGGAATTGTCTCCGGTTTCTTCATGGCTTATAATCGAGTTGGCGGTGAT 1759
Query 280 CGAGGTCACGGGATTTTCTTCATTGTACTCGGATGTCTTCTGTTTA-TCCCGGGGTTTTA 338
||||| ||||||||||||||||| || ||||| ||||||||||| | |||| ||||||||
Sbjct 1760 CGAGGCCACGGGATTTTCTTCATCGTCCTCGGGTGTCTTCTGTTCATTCCC-GGGTTTTA 1818
Query 339 CTATACACGGATTGCATATTACGCTTACAAAGGATACAAAGGTTTCTCCTTCTCAAATAT 398
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1819 CTATACACGGATTGCGTATTATGCTTACAAAGGATACAAAGGTTTCTCCTTCTCAAACAT 1878
Query 399 ACCATCCGTTTA 410
||| |||||||
Sbjct 1879 ACCGCCCGTTTA 1890
> AT4G29850.1 | Symbols: | Eukaryotic protein of unknown function
(DUF872) | chr4:14601621-14603011 REVERSE LENGTH=646
Length=646
Score = 403 bits (218), Expect = 9e-112
Identities = 281/312 (90%), Gaps = 2/312 (1%)
Strand=Plus/Plus
Query 100 ATGGCTTACGTCGACCATGCGTTCTCGATATCGGACGAAGACCTAATGATTGGGACTTCG 159
||||| |||||||||||||||||||||||| ||||||| ||| | ||||||| ||||||
Sbjct 138 ATGGCGTACGTCGACCATGCGTTCTCGATAACGGACGAGGACATTATGATTGAGACTTCA 197
Query 160 TACACCGTCAGTAATCGACCACCGGTGAAGGAGATCTCACTCGCGGTGGCTCTACTCGTA 219
|||||||||| ||| ||||| ||||||||||||||| |||||||||||||| |||||||
Sbjct 198 TACACCGTCAATAACCGACCGCCGGTGAAGGAGATCGCACTCGCGGTGGCTTTACTCGTG 257
Query 220 TTCGGAACCCTAGGAATCGTTTCAGGTTTCTTCATGGCGTATAACCGAGTTGGTGGTGAT 279
||||||||||||||||| || || |||||||||||||| ||||| |||||||| ||||||
Sbjct 258 TTCGGAACCCTAGGAATTGTCTCCGGTTTCTTCATGGCTTATAATCGAGTTGGCGGTGAT 317
Query 280 CGAGGTCACGGGATTTTCTTCATTGTACTCGGATGTCTTCTGTTTA-TCCCGGGGTTTTA 338
||||| ||||||||||||||||| || ||||| ||||||||||| | |||| ||||||||
Sbjct 318 CGAGGCCACGGGATTTTCTTCATCGTCCTCGGGTGTCTTCTGTTCATTCCC-GGGTTTTA 376
Query 339 CTATACACGGATTGCATATTACGCTTACAAAGGATACAAAGGTTTCTCCTTCTCAAATAT 398
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 377 CTATACACGGATTGCGTATTATGCTTACAAAGGATACAAAGGTTTCTCCTTCTCAAACAT 436
Query 399 ACCATCCGTTTA 410
||| |||||||
Sbjct 437 ACCGCCCGTTTA 448
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30391658935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5