BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480538
Length=580
Score E
Sequences producing significant alignments: (Bits) Value
AT2G19310.1 | Symbols: | HSP20-like chaperones superfamily pro... 845 0.0
> AT2G19310.1 | Symbols: | HSP20-like chaperones superfamily protein
| chr2:8369794-8370406 REVERSE LENGTH=613
Length=613
Score = 845 bits (457), Expect = 0.0
Identities = 542/583 (93%), Gaps = 6/583 (1%)
Strand=Plus/Plus
Query 1 AGAGTAGAGAAGAAGAAGATGTCAATAATTCCGATCAGCAATCGCCGGAGACTCTCTCCC 60
||| ||||||||||||||||||| || |||||||||||||||||||||||||| ||||||
Sbjct 9 AGAATAGAGAAGAAGAAGATGTCGATGATTCCGATCAGCAATCGCCGGAGACTATCTCCC 68
Query 61 AGCGACAGAATCTGGGAACCATTTGAACTCATGAACACCTTTCTTGATTTCCCATCACCA 120
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 69 GGCGATAGAATCTGGGAACCATTTGAACTCATGAACACCTTTCTTGATTTCCCATCACCA 128
Query 121 TCTCTCTTTCTTTCTCACCACTTTCCCTCACTTTCTCGAGAAATATTCCCATCAT-CTTC 179
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 129 GCTCTCTTTCTTTCTCACCACTTTCCCTCACTTTCTCGAGAAATATTCCCA-CAAACTTC 187
Query 180 ATCAACAACCGTCAAGACGCAGCTTAATTGGACTGAGACTCCGACGGCTCACGTTTTCAA 239
|||| | |||||||| |||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 188 ATCATCCACCGTCAATACGCAGCTCAATTGGACCGAGACTCCGACGGCTCACGTTTTCAA 247
Query 240 AGCGTATCTTCCGGGAGTGGCTCAAGACGAAGCGATAGTGTTCGTAGACGACGAAGGATA 299
|||||||||||||||||||| ||||||||||| ||| | ||||||||| || ||||||||
Sbjct 248 AGCGTATCTTCCGGGAGTGGATCAAGACGAAGTGATTGCGTTCGTAGATGAAGAAGGATA 307
Query 300 TCTCCAGATCTGTACTGGCGACAACAAGTTCATGAGCAGATTTGAA-CTTCCTAACAACG 358
||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 308 TCTTCAGATCTGTACTGGCGACAACAAGTTCATGAGCAGATTT-AAGCTTCCTAACAACG 366
Query 359 CCTTGAAGGATCAGGTCACGGCGTGGATGGAGGATGGGTTTCTTGTCGTGTTCGTTGCGA 418
|||||| ||||||||||||||||||||||||||| | |||||||||||||||||||| ||
Sbjct 367 CCTTGACGGATCAGGTCACGGCGTGGATGGAGGACGAGTTTCTTGTCGTGTTCGTTGAGA 426
Query 419 AAGATGGTTCTTCTTCGCCGCCACCGCTACCGGAGATAGAGGAGAATCGTAACGTGAGAG 478
|||||| |||||| |||||||||| ||| |||||||| ||||||||||||||||||||||
Sbjct 427 AAGATGCTTCTTCGTCGCCGCCACAGCTGCCGGAGATTGAGGAGAATCGTAACGTGAGAG 486
Query 479 TTGTGGAAATCACCGGCGATGATGATTAATCAAGTGTTAAATGTTGTCGAGATATGTATG 538
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||| | ||
Sbjct 487 TTGTGGAAATCACCGGCGATGATGATTAATTAAGTGTTACATGTTGTCGAGATATATGTG 546
Query 539 AATTAAAGTGAAACTTACAAGTTTTA-TGTACTAAATGAACAA 580
|||||||| |||||||| |||||| | ||||||||||||||||
Sbjct 547 AATTAAAGGGAAACTTAAAAGTTT-AGTGTACTAAATGAACAA 588
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27879951585
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5