BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480540
Length=2342
Score E
Sequences producing significant alignments: (Bits) Value
AT2G19260.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily... 3275 0.0
> AT2G19260.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily
protein | chr2:8356141-8360169 FORWARD LENGTH=2422
Length=2422
Score = 3275 bits (1773), Expect = 0.0
Identities = 2180/2369 (92%), Gaps = 58/2369 (2%)
Strand=Plus/Plus
Query 11 agagcgatagagcgagagagagcgacggagagagaga-AACTTGCGTCAGTGGAGGAGAG 69
|||| || |||| | || ||||||| |||||||||| | |||||||||||||| | |||
Sbjct 17 AGAGAGAGAGAGAGCGATAGAGCGA--GAGAGAGAGAGAGCTTGCGTCAGTGGA-G-GAG 72
Query 70 TCGGAAACTTGAGAAACTTGTGTAGAAGAAACGCCATAACTCGGAGGAAGCCCAAACGAG 129
||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||
Sbjct 73 TCGGAAACTTGAGAAACTTGTTTAGAAGAAACGCCATAACTTGGA-GAAGCCCAAACGAG 131
Query 130 GATTTAGCTATTGTGTCTCTTCGTAGT-CATCTGGAGATCAGGAGGATATGAAC-TCTAC 187
||||| ||| |||||| |||||||||| ||||||| |||||| ||||||||| | | |||
Sbjct 132 GATTTTGCTCTTGTGTATCTTCGTAGTCCATCTGGTGATCAGAAGGATATGAGCAT-TAC 190
Query 188 CATTCCAG-GGAGACTACATGAAGAAGTTGACCAACAGATTCATCGGTACTTAGAGAATT 246
|||||||| || |||||||||||||||| ||||||||||||||| ||||||||||||| |
Sbjct 191 CATTCCAGAGG-GACTACATGAAGAAGTCGACCAACAGATTCATTGGTACTTAGAGAAGT 249
Query 247 AATGTGCTTTCCGATAC-TTTTGGGTTTATCAGGAAAAGATGTTGGTGGAAAGTTCGTTC 305
||||||||||| ||||| |||| ||||| ||||||||| |||||||||||||||||||||
Sbjct 250 AATGTGCTTTCAGATACTTTTTTGGTTTCTCAGGAAAACATGTTGGTGGAAAGTTCGTTC 309
Query 306 AGCTCTTCCGTTGAATCTAGTCTACTGAACGTGTCCGAGTATCAAGATCCATTTGCTACA 365
|||||||| |||||| |||||||||||||||| |||||||||||||| ||||||||| ||
Sbjct 310 AGCTCTTCTGTTGAAACTAGTCTACTGAACGTATCCGAGTATCAAGACCCATTTGCTGCA 369
Query 366 TATGATTGGGCTTCGCTTGCTGAAACTTATCAGATGATCCACAAAGTTCCCGAACAGTCT 425
||||||||| | || ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 370 TATGATTGGACGTCTCTTGCTGAATCTTATCAGATGATCCACAAAGTTCCCGAACAGTCT 429
Query 426 CAAGTAAGCTTT-TGTAAAGCTGTTCCAGTCACTGATGCAATGAATCTTGATGAATCAAA 484
|||||||||||| | |||| |||||||||||||||| | ||||||||||||||||||||
Sbjct 430 CAAGTAAGCTTTCT-TAAAAATGTTCCAGTCACTGATACTATGAATCTTGATGAATCAAA 488
Query 485 ACATCCAAAACATCAAGTAAGTTGTCCAGAGAAATCTGTTATGCACAAGGTATCGGGAAA 544
||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 489 ACATCCAAAACATCAAGAAAGTTGTTCAGAGAAATCTGTTATGCATAAGGTATCGGGAAA 548
Query 545 GGCCCTGACTTCTCTTGTGTATCGTCGAAGGAAGAGGAGCTTAA-AGCTTGGGGGAACTG 603
||| |||||||||||||||||||||||||||||||||| ||||| | | |||||||||||
Sbjct 549 GGCTCTGACTTCTCTTGTGTATCGTCGAAGGAAGAGGACCTTAATA-CCTGGGGGAACTG 607
Query 604 AGGAACATAACCTAGGAAAAACCAGGAAACAGGATGATTCACTTGATGACTCTATTGTCT 663
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 608 AGGAACATAACCTAGGAAAAATCAGGAAACAGGATGATTCTCTTGATGACTCTATTGTCT 667
Query 664 CTTTACATAACACTGGAGAAAGTACAAAAAGGAAAAATCGCTTCAACAACTGTCTTGTCT 723
||||| ||||| ||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 668 CTTTATATAACCCTGAAGAAAGCACAAAAAGGAAAAATCGCTTCAACAACTGTCTTGTCT 727
Query 724 ATAGCCGGaaaaaaaGGAGAGGGGAATCCAGTTGTACTTTTACAGGAGAAACTACGATAA 783
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 728 ATAGCCGGAAAAAAAGGAGAGGGGAATCCAGTTGTACTTTTACTGGAGAAACTACGATAA 787
Query 784 GGGGTGCTGGGCTTGATGATGCTTTTGTTTCTAAGCATGACTGTGGAGAAACCAGGAGAA 843
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 788 GGGGTGATGGGCTTGATGATGCTTTTGTTTCTGAGCATGACTGTGGAGAAACCAGGAGAA 847
Query 844 GAGGCAATCGATCAGATAATTGTCTTGTGTATAGCAGaaaaaaaGGTAGAGTGAAATTTA 903
||||||||||||||||| |||| |||||||||||||| || |||||||||||||||||||
Sbjct 848 GAGGCAATCGATCAGATGATTGCCTTGTGTATAGCAGGAAGAAAGGTAGAGTGAAATTTA 907
Query 904 ATAGTTGTACTTTTAGCAAACATGTCACTGGAGGAACCAAGATAGGCTGTGATCAAGCTG 963
||||||||| |||||||||||||||||||||| ||||||||||| ||| |||||||||||
Sbjct 908 ATAGTTGTAGTTTTAGCAAACATGTCACTGGACGAACCAAGATAAGCTATGATCAAGCTG 967
Query 964 ACTCTTCTGCATGTAGCCACAGGGGACAGGTAGTTAAAGCTGATAGTGCTTTTACTGGAC 1023
||||||||||||||||||| | ||||||| ||||||||||||||||| |||| ||| |||
Sbjct 968 ACTCTTCTGCATGTAGCCAAATGGGACAGATAGTTAAAGCTGATAGTTCTTTAACTAGAC 1027
Query 1024 CTAACCCTGGAGAAATCAAGAAAAGTGGTCATCATCCTGTTTACAACCAAAGCAAGCAGT 1083
|||| ||||||||||||||||||||||||||||| | |||||||| |||||| |||||||
Sbjct 1028 CTAAGCCTGGAGAAATCAAGAAAAGTGGTCATCAACTTGTTTACAGCCAAAGAAAGCAGT 1087
Query 1084 TAGTGAAATCTAATGGGAGTTTTACTGAAAGTCATGTTGGGAAAACCAAGAGAAATGGAG 1143
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1088 TAGTGAAATCTAATGGGAGCTTTACTGAAAGTCATGTTGGAAAAACCAAGAGAAATGGAG 1147
Query 1144 AAAAATCTGATGTCTTGCTGACATATAGCCGGAGGAAGCAGAGAGGCAAATCTGTTGGTG 1203
| | |||||| ||||| || || ||||||||||||||| |||| || |||||| ||||||
Sbjct 1148 ATAGATCTGAGGTCTTACTTACGTATAGCCGGAGGAAGAAGAGTGGGAAATCTATTGGTG 1207
Query 1204 TTCGGGTTAATGGCTTTCTAGTTTATACCCGGAAGAAGTTAAAATTCAGAGGACCTTTTG 1263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1208 TTCGGGTTAATGGCTTTCTAGTTTATACCCGGAAGAAGTTAAAATTCAGAGGACCTTTTG 1267
Query 1264 CTAGACATGACCTAAGAGAAACCAA-AACAAATGGTGATCAAC-TT-----GT-AG---- 1311
|||||| ||||||||| |||||||| || |||||||||||||| || || ||
Sbjct 1268 CTAGACGTGACCTAAGCGAAACCAAGAA-AAATGGTGATCAACGTTCTACTGTCAGTTCT 1326
Query 1312 --A----T----GA---TACCCAGGTTACCGAAGTGACATATTCTTCAGATGGAACTAAT 1358
| | || |||||| |||||||||||||||| |||||| |||||||| |||
Sbjct 1327 CGAGAACTTTTAGACGATACCCAAGTTACCGAAGTGACATGTTCTTCTGATGGAACAAAT 1386
Query 1359 GACAGCTGCTCGTCATTGAAATCCAGTTCTGAAGTTGATTCAAGTTCGAGTACAA-CTGG 1417
||||||||||| |||||||||||||||||||||||| |||||| ||| |||| || || |
Sbjct 1387 GACAGCTGCTCCTCATTGAAATCCAGTTCTGAAGTTAATTCAACTTCTAGTA-AATCTCG 1445
Query 1418 GGAAGATGATTGCTATTCCTCTGATGCTGTGGTGTCTGAGACAGATACAGACGGTAGTAG 1477
||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||
Sbjct 1446 GGAAGATGATTGCTATTCCTCTGATTCTGGGGTGTCTGAGACAGATACAGATGGTAGTAG 1505
Query 1478 CGGCCCTTTCAGGCTGTGTAAACATTGTGATAAGCCAGGAACTGTCGAAAAGATGCTAAT 1537
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1506 CAGCCCTTTCAGGCAGTGTAAACATTGTGATAAGCCAGGAACTGTCGAAAAGATGCTAAT 1565
Query 1538 TTGTGATGAATGTGAAGAAGCATATCATACAATCTGCTGCGGTGTACAAATGAAAGACAT 1597
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
Sbjct 1566 TTGTGATGAATGTGAAGAAGCATATCATACACGCTGCTGCGGTGTTCAAATGAAAGACGT 1625
Query 1598 CGCAGGGATAGATGACTGGCTCTGTCCATCCTGTTTGAAAAATAAGCCATCAAAGACCAA 1657
|||| ||||||||| ||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1626 TGCAGAGATAGATGAGTGGCTCTGTCCATCCTGTTTGAAAAATCAGTCATCAAAGACCAA 1685
Query 1658 GACGAAGGGGAGAATTTCACGGGAACGGAAATGGAGAGTTACAGTACCATTGGTAATAGG 1717
||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1686 GACTAAGGGGAGAATTTCACATGAACGGAAATGGAGAGTTACAGTACCATTTGTAATAGG 1745
Query 1718 AGTTCGAATAGGAAAAAAGTTTCAAGCAGATGTTCCAGACTGGTCAGGTCCAACAATGAG 1777
| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1746 AATTAGAATAGGAAAAATGTTTCAAGCAGATGTTCCAGACTGGTCAGGTCCAACAATGAG 1805
Query 1778 TGATACTTCTTTTGTGGGTGAACCCTTGGAAATTGATCAGTCAGAATACACGCATGATCT 1837
|||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||
Sbjct 1806 TGATACTTCTTTTGTGGGTGAACCATTGGAAATTGGCCAGTCAGAATACATGCATGATCT 1865
Query 1838 CAAGAAGGCCAAGAATAGTAAGAAACAATGTTCTGCAGTGAATTGGCTTCAGTGCAGAGA 1897
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1866 CAAGAAGGCCAAGAATAGTAAGAAACAATGTTCTGCAGTGAATTGGCTTCAATGCAGAGA 1925
Query 1898 GGAAGATAGTAATGGAGATATCTGCGGAAAGTGGCGTAGGGCCCCTCGTTCAGAGGTACA 1957
||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1926 AGAAGATACTAATGGAGTTATCTGCGGAAAGTGGCGTAGGGCCCCTCGTTCAGAGGTACA 1985
Query 1958 AACCAAAGACTGGGAATGCTTCTGCTGCGTCTTTTGGGATCCATCACGTGCTGACTGTGC 2017
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 1986 AACCAAAGACTGGGAATGCTTCTGCTGCTTCTCTTGGGATCCATCACGTGCTGACTGTGC 2045
Query 2018 CGTCCCTCAGGAACTGGAGACAAGTGAGATCCTTAAACAACTCAAGTACATCAAGATGCT 2077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2046 CGTCCCTCAGGAACTGGAGACAAGTGAGATCCTTAAACAACTCAAGTACATCAAGATGCT 2105
Query 2078 AAGACCTCGATCAGACGCCAAAAAGCGAAAGCTAGGAGCAAAGGGTCGAAGCAGATCACA 2137
||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 2106 TAGACCTCGATCAGACGCCAAAAAGCGAAAACTAGGACCAAAGGGTCGAAGCAGATCACA 2165
Query 2138 TAACAAAGGAAAATCTTGATGGACACAATCAAA-TGCATATGCTTTTGGATTAGAGA--C 2194
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 2166 TATCAAAGGAAAATCTTGATGGACACAATCAAAATGCATATGCTTTTGGATTAGAGAGAC 2225
Query 2195 CTTAGAAACTAGAAAGGTAA-ACTCAGAAATTTTTTGTGAAGCGCCAATGAGTTTTGTAC 2253
|||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||
Sbjct 2226 CTTAGAAACTAGAAAGGTAACA-TCAGAAATTTTTTGTGAAGCGCCAATGCTTTTTGTAC 2284
Query 2254 CCCTTGCGAAACTTGAGGATATCAAGTTGCTCTATAAGTGATTAATTAGGTTCAGATCTT 2313
| | |||||||||||||||||||| | ||||||| ||||||||||||||||||
Sbjct 2285 ---T----A--CTTGAGGATATCAAGTTGCTTTCTAAGTGACTAATTAGGTTCAGATCTT 2335
Query 2314 TTGTTAGCTCCCAAAACAGGAGTAGTGAA 2342
|||||||||||||||||||||||||||||
Sbjct 2336 TTGTTAGCTCCCAAAACAGGAGTAGTGAA 2364
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116264462220
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5