BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480541
Length=944
Score E
Sequences producing significant alignments: (Bits) Value
AT2G16510.1 | Symbols: | ATPase, F0/V0 complex, subunit C prot... 1288 0.0
AT4G34720.1 | Symbols: AVA-P1, VHA-C1, ATVHA-C1 | ATPase, F0/V0... 630 6e-180
> AT2G16510.1 | Symbols: | ATPase, F0/V0 complex, subunit C protein
| chr2:7159629-7160892 REVERSE LENGTH=954
Length=954
Score = 1288 bits (697), Expect = 0.0
Identities = 873/954 (92%), Gaps = 28/954 (3%)
Strand=Plus/Plus
Query 2 AAAATCCAATTCTCTCGTC-CTCCCTCCAGATTCAAACGATCAGATCC-AAAGTTGTTAG 59
|||||||||||||||| || |||||||||||||||||||||| ||||| ||| || | ||
Sbjct 14 AAAATCCAATTCTCTC-TCTCTCCCTCCAGATTCAAACGATCCGATCCAAAACTT-TGAG 71
Query 60 ATCCGAGAAGATGTCTACATTCAGCGGCGATGAAACTGCTCCCTTCTTCGGCTTCCTCGG 119
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||
Sbjct 72 ATCCGAGAAGATGTCTACGTTCAGCGGCGATGAAACTGCTCCGTTCTTCGGCTTCCTTGG 131
Query 120 CGCCGCCGCCGCTCTCGTCTTCTCCTGTATGGGAGCTGCTTATGGAACTGCGAAGAGTGG 179
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 132 CGCCGCCGCCGCTCTCGTCTTCTCCTGTATGGGAGCTGCTTATGGAACAGCAAAGAGTGG 191
Query 180 TGTTGGTGTGGCTTCAATGGGAGTGATGAGACCTGAGTTGGTGATGAAGTCTATTGTTCC 239
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 192 TGTTGGTGTGGCTTCAATGGGAGTGATGAGACCTGAGTTGGTTATGAAGTCTATTGTCCC 251
Query 240 TGTTGTTATGGCTGGTGTTTTGGGTATTTATGGACTTATTATTGCTGTTATTATCAGTAC 299
||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 252 TGTGGTTATGGCTGGTGTTTTGGGTATTTATGGACTTATTATTGCTGTTATCATTAGTAC 311
Query 300 CGGTATTAATCCTAAGGCTAAGTCTTATTACCTATTTGACGGATACGCTCACCTTTCGTC 359
||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 312 CGGCATCAATCCTAAGGCTAAGTCTTACTACCTATTTGACGGATACGCTCACCTTTCGTC 371
Query 360 TGGTCTTGCTTGTGGTCTTGCTGGGCTATCAGCTGGTATGGCCATTGGAATTGTCGGAGA 419
|||||||||||||||||||||||| || |||||||||||||| ||||||||||| || ||
Sbjct 372 TGGTCTTGCTTGTGGTCTTGCTGGACTCTCAGCTGGTATGGCTATTGGAATTGTTGGTGA 431
Query 420 TGCGGGTGTTAGGGCAAATGCGCAGCAGCCTAAGCTCTTTGTTGGGATGATTCTTATCCT 479
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 432 TGCGGGTGTTAGGGCAAATGCTCAGCAGCCTAAGCTATTTGTTGGGATGATTCTTATCCT 491
Query 480 TATCTTTGCGGAAGCACTTGCTCTATACGGCCTTATTGTAGGCATTATCTTATCTTCTCG 539
||||||||||||||| || |||||||||||||| ||||||||||| || |||||||||||
Sbjct 492 TATCTTTGCGGAAGCGCTCGCTCTATACGGCCTAATTGTAGGCATCATTTTATCTTCTCG 551
Query 540 AGCTGGTCAGTCCAGAGCAGAATGAGAGCACAAACATATGTCACAGTT-CCAGGTACTTC 598
|||||||||||||||||||||||||||||||||||| |||| | | || |||||||||||
Sbjct 552 AGCTGGTCAGTCCAGAGCAGAATGAGAGCACAAACAAATGTTAAAATTTCCAGGTACTTC 611
Query 599 CTTATCGATCAACTTTTGTGTGTGGTATGTGGTATCGGGAGCCGATATTTTGTGGATTCT 658
||||||||||||||| | ||| ||||||| |||||||||||||||||||||||||||||
Sbjct 612 CTTATCGATCAACTTATAAGTGCGGTATGTAGTATCGGGAGCCGATATTTTGTGGATTCT 671
Query 659 TGGATCTTGGTTTGGGAAGCAGATCT-GCCACCTA-CTTTC-TTCGGTTGCTGGTTGCTT 715
||| | |||| | |||||||| | ||||||| ||||| || ||||| ||||| |||
Sbjct 672 TGG-T-TTGG---G--AAGCAGATGTTGCCACCTCGCTTTCCTT-GGTTGGTGGTTACTT 723
Query 716 GAGTGTAGGATGTTATTTTGTTTGGTTCGTTAATaaaaaaa-GAGCTTGGCATTTGTTTT 774
|||||||||||||||||| ||| ||| || ||||||||||| ||||||||||||||||||
Sbjct 724 GAGTGTAGGATGTTATTTGGTT-GGTACGGTAATAAAAAAAAGAGCTTGGCATTTGTTTT 782
Query 775 GTATTCTTGTATCGTCCGCATTTGTCTTGTTGAACTTGATAATATTTTGTTTGTAAAGAA 834
|||||||||||| ||| |||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 783 GTATTCTTGTATTGTCTGCATCTGTCTTGATGAACTTGATAATATTTTGTTTGTAAAGAA 842
Query 835 GTGTGCTTCTGATACCATCTTTGAATGTTATGAGATTAATCTTTGATAGCTTTTCCACTG 894
|| ||||||||||||||||||||||||||||||||||||| | ||||||||| ||||
Sbjct 843 GTTTGCTTCTGATACCATCTTTGAATGTTATGAGATTAAT----GCTAGCTTTTCTACTG 898
Query 895 AACAAAACATTATATAA--GGAGG-TGGTTAAGCAAAGTAA-GCAAAATATTAA 944
||||||||||||||| ||||| || ||||||||||||| | ||||||||||
Sbjct 899 AACAAAACATTATATTTTCGGAGGGTG-TTAAGCAAAGTAATG-AAAATATTAA 950
> AT4G34720.1 | Symbols: AVA-P1, VHA-C1, ATVHA-C1 | ATPase, F0/V0
complex, subunit C protein | chr4:16567824-16569295 REVERSE
LENGTH=1024
Length=1024
Score = 630 bits (341), Expect = 6e-180
Identities = 448/500 (90%), Gaps = 6/500 (1%)
Strand=Plus/Plus
Query 70 ATGTCTACATTCAGCGGCGATGAAACTGCTCCCTTCTTCGGCTTCCTCGGCGCCGCCGCC 129
|||||||| ||||||||||||||||| |||||||||||||||||||||||||| || |||
Sbjct 131 ATGTCTACGTTCAGCGGCGATGAAACAGCTCCCTTCTTCGGCTTCCTCGGCGCTGCAGCC 190
Query 130 GCTCTCGTCTTCTCCTGTATGGGAGCTGCTTATGGAACTGCGAAGAGTGGTGTTGGTGTG 189
|| ||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 191 GCACTCGTTTTCTCCTGTATGGGAGCTGCTTATGGAACCGCAAAGAGTGGTGTTGGTGTG 250
Query 190 GCTTCAATGGGAGTGATGAGACCTGAGTTGGTGATGAAGTCTATTGTTCCTGTTGTTATG 249
||||| |||||||| ||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 251 GCTTCTATGGGAGTTATGAGACCTGAGTTGGTGATGAAATCTATTGTCCCTGTTGTTATG 310
Query 250 GCTGGTGTTTTGGGTATTTATGGACTT-ATTATTGCTGTTATTATCAGTACCGGTATTAA 308
||||| || |||||||| |||||| || || ||||||||||| ||||||||||| |||||
Sbjct 311 GCTGGAGTGTTGGGTATCTATGGA-TTGATCATTGCTGTTATCATCAGTACCGGGATTAA 369
Query 309 TCCTAAGGCTAAGTCTTATTACCTATTTGACGGATACGCTCACCTTTCGTCTGGTCTTGC 368
|| |||||||||||||| ||||| ||||| |||||||| || || ||||||||||||||
Sbjct 370 CCCCAAGGCTAAGTCTTACTACCTCTTTGATGGATACGCACATCTCTCGTCTGGTCTTGC 429
Query 369 TTGTGGTCTTGCTGGGCTATCAGCTGGTATGGCCATTGGAATTGTCGGAGATGCGGGTGT 428
||||||||||||||| || |||||||| ||||||||||| ||||| || ||||| |||||
Sbjct 430 TTGTGGTCTTGCTGGTCTCTCAGCTGGAATGGCCATTGGGATTGTTGGTGATGCCGGTGT 489
Query 429 TAGGGCAAATGCGCAGCAGCCTAAGCTCTTTGTTGGGATGATTCTTATCCTTATCTTT-G 487
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 490 CAGGGCAAATGCTCAGCAGCCTAAGCTCTTTGTTGGGATGATTCTTATCCTTAT-TTTCG 548
Query 488 CGGAAGCACTTGCTCTATACGGCCTTATTGTAGGCATTAT-CTTATCTTCTCGAGCTGGT 546
| ||||| |||||||| ||||| ||||||||||| || || ||| || || ||||||||
Sbjct 549 CAGAAGCGCTTGCTCTTTACGGGCTTATTGTAGGAATCATTCTT-TCCTCACGAGCTGGC 607
Query 547 CAGTCCAGAGCAGAATGAGA 566
||||| ||||| ||||||||
Sbjct 608 CAGTCTAGAGCTGAATGAGA 627
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46165181093
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5