BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480545
Length=1047
Score E
Sequences producing significant alignments: (Bits) Value
AT2G16595.1 | Symbols: | Translocon-associated protein (TRAP),... 1463 0.0
> AT2G16595.1 | Symbols: | Translocon-associated protein (TRAP),
alpha subunit | chr2:7198127-7200297 FORWARD LENGTH=1203
Length=1203
Score = 1463 bits (792), Expect = 0.0
Identities = 959/1036 (93%), Gaps = 25/1036 (2%)
Strand=Plus/Plus
Query 1 ATGAGCAATGTGTTTCTAAATTGGTAAAG-C-CTAAACGACGTCGTTTATAAAGTCCGAT 58
||| |||| |||||||||||||||| ||| | ||||||||||||||| ||| ||||||
Sbjct 20 ATGGGCAAGGTGTTTCTAAATTGGT-AAGTCGGAAAACGACGTCGTTTACAAAATCCGAT 78
Query 59 CT----A-A-A--C-CA-TCACATGTCGTTCTTCGTCAACGCCGGTGAAGAAAGCATAAA 108
|| | | | | || ||| ||||||||||||||||||| ||||||||||||||| ||
Sbjct 79 CTGCACACACACTCACATTCATATGTCGTTCTTCGTCAACGTCGGTGAAGAAAGCAT-AA 137
Query 109 ACACGTCAAAAAGACAAAACCACCTTTTGTCCTCTTGGTTTCTTCGCCC--TTACTTCAA 166
||||||| ||||||||||| |||| | |||| ||||| ||||||||||| |||||||||
Sbjct 138 ACACGTC-AAAAGACAAAAGCACC-TCTGTCTTCTTGCTTTCTTCGCCCTTTTACTTCAA 195
Query 167 CCCCACGACGATCAATTCAAC-AAGACCAATCTCAAAACCATCATGACGACAAGTACTAG 225
||||||| |||||||||||| || |||||||||||||||||||||| ||||||| |||
Sbjct 196 -CCCACGAAGATCAATTCAACTAA-ACCAATCTCAAAACCATCATGAGGACAAGTTTTAG 253
Query 226 ACTTCTCTTCCTT-GCTTTCCTTCTACTTGCCTCACCTTTCCTCAAAGTTGCTTTGTGCC 284
||||||||| ||| |||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 254 ACTTCTCTT-CTTCGCTTTCCTTCTACTTGTCTCACCTTTTCTCAAAGTTGCTTTGTGCC 312
Query 285 AATCGGATTCGGAAGATTCTGGCTTTGAAGTTTCTGATGTTAGTGAAGAAGAGAGTGATG 344
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 313 AATCGGATTCGGAAGATTCTGGCTTCGAAGTTTCTGATGTTGGTGAAGAAGAGAGTGATG 372
Query 345 CAGAGGAGGTTTTTGGTTTGGAACTTAGCTCAGCTCCTGAAATTGAAACCCTTTGCGTTT 404
||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 373 CAGAGGAAGTTTTTGGTTTGGAACTTACCTCAGCTCCTGGAATTGAAACCCTTTGCGTTT 432
Query 405 TCCCCAAAAACAGTGCAAAAATAATAAAAGCTGGAATCGAGACTGAGCTGCTTGTTGGAA 464
||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 433 TCCCCAAGAACAGTGCAAAAATAATAAAAGCTGGAGTTGAGACTGAGCTGCTTGTTGGAA 492
Query 465 TGAAAAATGATGGTCAATCCAATGTAGATATTGTTGCTGTTAAAGGCAGTTTACATCTTC 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 TGAAAAATGATGGTCAATCCAATGTAGATATTGTTGCTGTTAAAGGCAGTTTACATCTTC 552
Query 525 CTTTTGATCAAAATGCTGTTCAGAATCTCACTGCTCTGAGTTTCAGCAACGCATCTGTGC 584
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 553 CTTTTGATCAAAATGCTGTTCAGAATCTCACTGCTCTGAGTTTCAGCAACGCGTCTGTGC 612
Query 585 CAACCTCTGCTCAAGCTACCTTCCCATATGTTTTTGTTGTCAGCAAGTTCCTCCAGGCGG 644
|||| || |||||||||||||| ||||||| ||||| ||||||||||||||| |||||||
Sbjct 613 CAACTTCCGCTCAAGCTACCTTGCCATATGCTTTTGCTGTCAGCAAGTTCCTGCAGGCGG 672
Query 645 GTGCTTTTGAATTAGTTGGCACCATCATCTATGAGATAGATGGTAAGCCATACCAAAGCA 704
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 673 GTGCTTTTGATTTTGTTGGCACCATCATCTATGAGATAGATGGTAAGCCATACCAAAGCA 732
Query 705 CCTTTTACAATGGAACTATCGAAGTTGTTGAAGATGGTCCTCTCTTCAGGATGGAGTCAG 764
|||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 733 TCTTTTATAATGGAACTATTGAAGTTGTTGAAGATGGTCCTCTCTTCAGAATGGAGTCAG 792
Query 765 TCTTCCTTAGCGGCCTTTTGATTTTTGTTATCG-TTCTTCTAGCCATATATATCCAAAAT 823
|||||||||| || ||||| || |||||||||| || |||| ||||| ||||||||||||
Sbjct 793 TCTTCCTTAGTGGTCTTTTAATCTTTGTTATCGCTT-TTCTCGCCATCTATATCCAAAAT 851
Query 824 GGTTTGAAGCATATGACCAAGAAAGCAAAGAGAGCACCAAAAGTTGAAGTTGGAACCGCA 883
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 852 GTTTTGAAGCATATGACCAAGAAAACAAAGAGAGCACCAAAAGTTGAAGTTGGAACCGCA 911
Query 884 ACAAAAAATGCTTCGCATGATGAATGGCTTGAGGGTACTTCGTACACTCAATCATCGAGT 943
|| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 912 ACTAAAGATGCTTCGCATGATGAATGGCTTGAGGGTACTTCGTACACTCAATCTTCGAGT 971
Query 944 AAGTCAAAGAAGAAGAAGTAGATCTCACACGCTTTGTTAGGGGACTTGAGATAAGAAACC 1003
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 972 AAGTCAAAGAAGAAGAAGTAGATCTCACACGCTTTGTTAGGGGGCTTGAGATAAGAAACC 1031
Query 1004 GAAAACATACGAACGA 1019
||||||| ||||||||
Sbjct 1032 GAAAACACACGAACGA 1047
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51339298234
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5