BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480552
Length=735
Score E
Sequences producing significant alignments: (Bits) Value
AT2G16700.1 | Symbols: ADF5, ATADF5 | actin depolymerizing fact... 1037 0.0
AT3G46000.1 | Symbols: ADF2 | actin depolymerizing factor 2 | c... 95.3 7e-19
> AT2G16700.1 | Symbols: ADF5, ATADF5 | actin depolymerizing factor
5 | chr2:7244608-7245741 FORWARD LENGTH=815
Length=815
Score = 1037 bits (561), Expect = 0.0
Identities = 697/758 (92%), Gaps = 27/758 (4%)
Strand=Plus/Plus
Query 1 GTCTTACCATTTGAACAGAACAAAAAGCTCTCCACGCCT--aaaaaaag-agaaagagac 57
|||||||||||||||||| | |||||||||||||||||| |||||||| | ||||||||
Sbjct 1 GTCTTACCATTTGAACAG-A-AAAAAGCTCTCCACGCCTAAAAAAAAAGAAAAAAGAGAC 58
Query 58 --aa-aag---aag--aaa-aagaaTCAAAC-TT-TAA-TCTTTAGCAACAATGGCGATG 105
|| ||| ||| ||| ||||||||||| || ||| |||||||| |||||||||||
Sbjct 59 AGAAGAAGAAAAAGATAAAGAAGAATCAAACTTTGTAACCCTTTAGCAGCAATGGCGATG 118
Query 106 GCTTTCAAGATGGCGACGACGGGTATGCGTGTGACGGATGAGTGTACGAGCTCATACATG 165
||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||
Sbjct 119 GCTTTCAAGATGGCGACGACGGGGATGCGTGTGACGGATGAGTGTACGAGTTCATTCATG 178
Query 166 GAGATGAAATGGAAGAAAATTCATAGATACATCATTTTCAAGATCGAAGAGAAGTCACGT 225
|| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 179 GACATGAAATGGAAGAAAGTTCATAGATACATCGTTTTCAAGATCGAAGAGAAGTCACGT 238
Query 226 AAAGTCACCGTCGATAAAGTCGGCGGCGCCGGTGAAAGCTACCACGATCTTGCTGCTTCT 285
|||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||
Sbjct 239 AAAGTCACCGTCGATAAAGTCGGCGGCGCCGGTGAAAGCTACCACGATCTCGAAGATTCT 298
Query 286 TTACCGGTGGATGACTGTCGTTACGCTGTCTTTGATTTCGACTTCGTCACCGTCGATAAC 345
|||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 299 TTACCGGTGGATGATTGTCGCTACGCTGTCTTTGATTTCGACTTTGTCACCGTCGATAAC 358
Query 346 TGCCGCAAGAGCAAGATCTTCTTCATTGCATGGTCACCGGAGGCATCAAAGATAAGGGCA 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TGCCGCAAGAGCAAGATCTTCTTCATTGCATGGTCACCGGAGGCATCAAAGATAAGGGCA 418
Query 406 AAGATATTGTACGCAACGTCGAAAGATGGGCTGAGGAGAGTGTTGGAAGGGATTCACTAT 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 AAGATATTGTACGCAACGTCGAAAGATGGGCTGAGGAGAGTGTTGGAAGGGATTCACTAT 478
Query 466 GAGCTTCAAGCCACTGATCCGACGGAGATGGGTTTCGATATTATCCAAGACCGTGCCAAA 525
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GAACTTCAAGCTACTGATCCGACGGAGATGGGTTTCGATATTATCCAAGACCGTGCCAAA 538
Query 526 TAAATTTATTAATCAAGAAAATATGATTTGACTCACTTTGTCAATAATTAACGTTAATTA 585
|| ||| || | | |||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 539 TAGATTGATCACTTAAGAGAATATGATTTGACTCACTTTGTCAATAATTAACATTAATTA 598
Query 586 GGTTATTGATTAATGTTTAATTATTGCTGGTTAGTGCTTAC-CTTTTT-GAGTTT-TT-- 640
||| || | |||||||||||||||||||||||||||||||| |||||| |||||| ||
Sbjct 599 GGTCATCGGTTAATGTTTAATTATTGCTGGTTAGTGCTTACTCTTTTTTGAGTTTATTAT 658
Query 641 CCTT---CAGTCTCACCAGCACTATCCTTTAATTATGACgtttgtgtgtttgattgtgtt 697
|||| |||||| ||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 659 CCTTGATCAGTCTTACCGGCACTATCCTTTAATTATGACGTTTGTGT-TTTGATTGTGTT 717
Query 698 gttgtttatatatttttgtCGGTTAAGCAAACATAAAA 735
||| |||| ||||||||||||||||||||||||||
Sbjct 718 GTTAAA-ATATTTTTTTGTCGGTTAAGCAAACATAAAA 754
> AT3G46000.1 | Symbols: ADF2 | actin depolymerizing factor 2 |
chr3:16907451-16908999 REVERSE LENGTH=883
Length=883
Score = 95.3 bits (51), Expect = 7e-19
Identities = 145/188 (77%), Gaps = 16/188 (9%)
Strand=Plus/Plus
Query 319 GATTTCGACTTCGTCACCGTC-GATAACTGCC-GCAAGAGCAAGATCTTCTTCATTGCAT 376
||||||||||| ||||| | | || ||||||| | |||||||||||||||||||||||||
Sbjct 382 GATTTCGACTTTGTCACTG-CGGAGAACTGCCAG-AAGAGCAAGATCTTCTTCATTGCAT 439
Query 377 GGTCACCGGAGGCAT-C-AAAGATAAGGG-CAAAGAT-ATTGTACGCAA-CGTCGAAAGA 431
|||| ||||| | | | |||| | || | ||| ||| ||| ||||| | | || |||||
Sbjct 440 GGTCTCCGGACAC-TGCCAAAG-TGAGAGACAA-GATGATT-TACGCGAGC-TCTAAAGA 494
Query 432 TGGGCTGAGGAGAGTGTTGGAAGGGATTCACTATG-AGCTTCAAGCCACTGATCCGACGG 490
| || | | ||||| | || || ||||| || | |||||||| |||||||| || |
Sbjct 495 TAGGTTCAAGAGAGAACTAGATGGAATTCAAG-TGGAACTTCAAGCTACTGATCCAACAG 553
Query 491 AGATGGGT 498
| ||||||
Sbjct 554 AAATGGGT 561
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35666244370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5