BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480553
Length=673
Score E
Sequences producing significant alignments: (Bits) Value
AT2G16710.3 | Symbols: | Iron-sulphur cluster biosynthesis fam... 784 0.0
> AT2G16710.3 | Symbols: | Iron-sulphur cluster biosynthesis family
protein | chr2:7248143-7250289 FORWARD LENGTH=859
Length=859
Score = 784 bits (424), Expect = 0.0
Identities = 603/680 (89%), Gaps = 49/680 (7%)
Strand=Plus/Plus
Query 43 TCGATGAAAGCTTCTCAAGTTTTGGCGGCTGCGGCGGCGAGGGTTGGACCGGCGTTAAGG 102
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 149 TCGATGAAAGCTTCTCAAATTTTGGCGGCTGCAGCGGCGAGGGTTGGACCGGCGTTAAGG 208
Query 103 AAGCAAGTATTAACCTTGACGGACGAAGCTGCCTCTAGGGTTCATCATCTCTTACAACAG 162
||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||
Sbjct 209 AAGCAAGTATTAACCTTAACGGACGAAGCTGCTTCTAGGGTTCATCATCTCTTGCAACAG 268
Query 163 CGTCAAAAACCTTTCCTCCGATTAGGCGTTAAAGCTCGTGGCTGCAACGGCTTGTCGTAC 222
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 269 CGTCAAAAACCTTTTCTCCGATTAGGCGTTAAGGCTCGTGGCTGCAACGGCTTGTCGTAC 328
Query 223 ACTCTCAATTA---C-G--------C------CGATGAGAAAGGGAAATTTGATGAGCTG 264
||||||||||| | | | |||||||||||| |||||||| ||| ||
Sbjct 329 ACTCTCAATTACGCCGGTAAAACTTCTGGGAACGATGAGAAAGGTAAATTTGACGAGTTG 388
Query 265 GTTGAGGAGAAAGGTGTGAGGATACTTGTTGAACCAAAGGCCTTAATGCATGTGATTGGA 324
|| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 389 GTAGAAGAGAAAGGTGTGAGGATCCTTGTTGAACCAAAGGCCTTAATGCATGTGATTGGA 448
Query 325 ACCAAGATGGATTTTGTAGATGATAAACTCAGATCAGAGTTTGTGTTCATCAATCCTAAC 384
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 449 ACAAAGATGGATTTTGTAGATGATAAACTCAGATCAGAGTTTGTGTTTATCAATCCTAAC 508
Query 385 TCACAAGGACAATGCGGGTGTGGTGAATCGTTTATGACAACATCTACTTCTAGTGCTAAG 444
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 509 TCACAAGGACAATGCGGGTGTGGTGAATCGTTTATGACAACATCTACCTCTAGTGCTAAG 568
Query 445 CATAGTGCTAGTTAACACACAGTGATGCGTTTGCATTTGT--T-A---T-A--------- 488
|| ||||||||||||||||||||||||||||| ||||||| | | | |
Sbjct 569 CAGAGTGCTAGTTAACACACAGTGATGCGTTTACATTTGTGATTACACTCATATATTATA 628
Query 489 CTGTTACTGGAATTGGCGTCAATGAGAAACAAAGGCTTTGCAATAAGAATTGAGTTTTAT 548
||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||
Sbjct 629 CTGTTACTGGAATTGGCGTTAATGAGAAACAAATACTTTTTAATAAGAATTGAGTTTTAT 688
Query 549 GTTTGTGCGCAACTTT-AGGCATTAGATTGGTCACTTTATTGCATATAC---T--G---- 598
|||||||||| ||||| |||||||||||||||||||||||||||||||| | |
Sbjct 689 GTTTGTGCGCTACTTTCAGGCATTAGATTGGTCACTTTATTGCATATACACATTAGAAGC 748
Query 599 T--TGTTG---CTTAGAGATATTTCTAAAGCTATGTATTTAGTGGAACGGGTAATTTTGA 653
| ||||| ||||||||||||||| ||||||||||||||||||||||| |||| ||||
Sbjct 749 TCATGTTGTTGCTTAGAGATATTTCTGAAGCTATGTATTTAGTGGAACGGATAATCTTGA 808
Query 654 GATCAATTAATGTATTCCTT 673
||| ||||||||||||||||
Sbjct 809 GATTAATTAATGTATTCCTT 828
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32551727256
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5