BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480557
Length=650
Score E
Sequences producing significant alignments: (Bits) Value
AT2G16740.1 | Symbols: UBC29 | ubiquitin-conjugating enzyme 29 ... 1003 0.0
> AT2G16740.1 | Symbols: UBC29 | ubiquitin-conjugating enzyme 29
| chr2:7267722-7268942 FORWARD LENGTH=810
Length=810
Score = 1003 bits (543), Expect = 0.0
Identities = 615/649 (95%), Gaps = 7/649 (1%)
Strand=Plus/Plus
Query 1 AAGCTTTCCTGTTTGCAAGAGAATCACCAATCTTTGCTTACGGTTCACGCTTTAAAAATA 60
|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 1 AAGCATTCCTGTTTGCAAGAGAATCACAAATCTTTGCTTACGGTTCACGCTTTAAAAACA 60
Query 61 CACCTCTCATTCTCCTTCTATAAACAAACCACCCATAGAtttttttttCACACAACTTCT 120
|| |||||||||||||||| | ||||||||| ||| | |||||||||||| ||||||
Sbjct 61 CAACTCTCATTCTCCTTCTCTTCACAAACCACTCAT--A-TTTTTTTTCACA-TACTTCT 116
Query 121 TTGTAGTGCTAGTTTCCATTGTATCAAACACTCAGCAACCTGATGGCAACGAGACGGATA 180
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 117 TTGTAGTGCTACTTTCCATTATATCAAACACTCAGCAACCTGATGGCAACGAGACGGATA 176
Query 181 TTGAAAGAACTGAAGGAGTTGCAAAGAGACCCTCCTGTATCATGCAGTGCAGGTCCAACA 240
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 TTGAAAGAATTGAAGGAGTTGCAAAGAGACCCTCCTGTATCATGCAGTGCAGGTCCAACA 236
Query 241 GGAGAAGATATGTTCCACTGGCAAGCTACTATAATGGGTCCGAACGAAAGTCCGTA-TGC 299
|||||||||||||||||||||||||||||||||||||||||||| |||||||| || | |
Sbjct 237 GGAGAAGATATGTTCCACTGGCAAGCTACTATAATGGGTCCGAATGAAAGTCCTTACT-C 295
Query 300 CGGCGGTGTTTTCCTTGTCAATATCCATTTCCCACCTGATTATCCTTTCAAACCTCCTAA 359
||| |||||||||||||||||||| |||||||| |||||||||||||| |||||||| ||
Sbjct 296 CGGAGGTGTTTTCCTTGTCAATATTCATTTCCCTCCTGATTATCCTTTTAAACCTCCCAA 355
Query 360 GGTTGTATTCCGAACCAAAGTGTTTCACCCAAACATCAACAGCAATGGAAACATATGTTT 419
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 356 GGTTGTATTCAGAACCAAAGTGTTTCACCCAAACATCAACAGTAATGGAAACATATGTTT 415
Query 420 GGACATTCTCAAAGACCAATGGAGCCCTGCCCTTACCATTTCTAAGGTGCTTCTCTCTAT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 GGACATTCTCAAAGACCAATGGAGCCCTGCCCTTACCATTTCTAAGGTGCTTCTCTCTAT 475
Query 480 ATGCTCTCTTCTAACAGATCCAAACCCTGACGATCCTCTGGTGCCAGATATAGCTCACAT 539
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 476 ATGCTCTCTTCTAACAGATCCAAACCCTGACGACCCTCTGGTGCCAGAGATAGCTCACAT 535
Query 540 ATACAAAACTGACAAGGCCAAATATGAAGCCATGGCTCGAAGCTGGACCCAGAAGTATGC 599
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 ATACAAAACTGACAAGACCAAATATGAAGCCATGGCTCGAAGCTGGACCCAGAAGTATGC 595
Query 600 CTTGTTTTAAAGCTCACAACTCCTCAttttt-cctttttcttttggttt 647
||||||||||||||||||| ||||| ||||| ||||||| |||||||||
Sbjct 596 CTTGTTTTAAAGCTCACAATTCCTCTTTTTTTCCTTTTTATTTTGGTTT 644
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31396341875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5