BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480561
Length=1435
Score E
Sequences producing significant alignments: (Bits) Value
AT2G16780.1 | Symbols: MSI2, MSI02, NFC02, NFC2 | Transducin fa... 2313 0.0
AT4G35050.1 | Symbols: MSI3, NFC3 | Transducin family protein /... 1243 0.0
> AT2G16780.1 | Symbols: MSI2, MSI02, NFC02, NFC2 | Transducin
family protein / WD-40 repeat family protein | chr2:7281462-7283646
REVERSE LENGTH=1464
Length=1464
Score = 2313 bits (1252), Expect = 0.0
Identities = 1378/1439 (96%), Gaps = 7/1439 (0%)
Strand=Plus/Plus
Query 1 gagagagagaagtagattgagaggcgagagagaTAATGGCAGATGAAGGTAAGGAGGAGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 29 GAGAGAGAGAAGTAGATTGAGAGGCGAGAGAGATAATGGCAGATGAAGGTAAGGAGGAGA 88
Query 61 CGGGAATGGATCAAGTGGAGGAAGATTTCTCAGTGTGGAAGAAGAACACACCATTTCTCT 120
| ||||||| ||| || ||||||||||| || ||||||||||||||||||||||||||||
Sbjct 89 CAGGAATGGGTCAGGTCGAGGAAGATTTTTCTGTGTGGAAGAAGAACACACCATTTCTCT 148
Query 121 ACGATCTTTTGATCTCTCACCCACTCGAATGGCCGTCTCTCACAGTCCATTGGGTTCCAT 180
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 149 ACGATCTTTTGATCTCTCACCCACTCGAATGGCCATCTCTCACCGTCCATTGGGTTCCAT 208
Query 181 CGACGCCTAATCCTTACGCGGCGGACCCTTACTTCGGCGTCCACAAGCTTATACTCGGGA 240
||||||| |||||||||| || ||| |||||||||| |||||||||||||||||||| |
Sbjct 209 CGACGCCAAATCCTTACGTAGCAGACTCTTACTTCGGTGTCCACAAGCTTATACTCGGTA 268
Query 241 CTCATACTTCCGGTAGTGCTCAAGATTTCCTCATGGTCGCCGACGTCGTTACCCCGACAC 300
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 269 CTCATACTTCCGGTAGTGCTCAAGATTTTCTCATGGTCGCCGACGTCGTTACCCCGACAC 328
Query 301 CAAACGGTGAACCTGGGTTAGGCGGCCCTAATCAGGAT-CCTATTATTCCTAAGGTGGAG 359
|||||| ||||||||| |||||||| ||||||||||| ||| |||||||||||||||||
Sbjct 329 CAAACGCAGAACCTGGGATAGGCGGCGCTAATCAGGATCCCT-TTATTCCTAAGGTGGAG 387
Query 360 ATTAGTCAGAAAATACGTGTTGATGGAGAAGTGAACAGAGCGCGGTGCATGCCTCAAAAG 419
||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 388 ATTAGGCAGAGGATACGTGTTGATGGAGAAGTGAACAGAGCGCGGTGTATGCCTCAAAAG 447
Query 420 CCGACGCTTGTGGGTGCAAAGACAAGTGGGTGTGAGGTGTTTCTGTTTGATTACGCCAAA 479
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 448 CCGACGCTTGTGGGTGCAAAGACGAGTGGGTGTGAGGTGTTTCTGTTTGATTACGCCAAA 507
Query 480 CATGCTGCAACGCCAAAAACGAGTGAGTGTGATCCTGATCTGAGGTTAGTAGGACATGAC 539
|||||||||| | | ||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 508 CATGCTGCAAAGTCTCAAACGAGTGAGTGTGATCCTGATCTGAGGCTAGTGGGACATGAC 567
Query 540 AAGGAAGGGTATGGACTGTCTTGGAGTCCTTTCAAGGAGGGTTATCTTCTGAGTGGTTCA 599
||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 568 AAGGAAGGGTATGGATTGTCTTGGAGTCCTTTCAAGGAAGGTTATCTTTTGAGTGGTTCA 627
Query 600 CAGGATCAGAAGATCTGTCTTTGGGATGTTTCAGCTACACCGCAAGATAAGGTTTTGAAT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 628 CAGGATCAGAAGATCTGTCTTTGGGATGTTTCAGCTACACCGCAAGATAAGGTTTTGAAT 687
Query 660 GCAATGTTTGTGTATGAGGGACATGAAAGTGCTATCGCAGATGTATCATGGCACATGAAG 719
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 688 GCAATGTTTGTGTATGAGGGACATGAAAGTGCTATCGCAGATGTGTCATGGCACATGAAG 747
Query 720 AACGAGAACCTCTTTGGGTCTGCGGGTGAGGATGGCCGATTGGTGATATGGGACACACGG 779
|| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 748 AATGAGAACCTTTTTGGTTCTGCGGGTGAGGATGGCCGATTGGTGATATGGGACACACGG 807
Query 780 ACAAACCAAATGCAACACCAAGTGAAAGTTCACGAGAGAGAGGTCAACTATCTATCTTTC 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 808 ACAAACCAAATGCAACACCAAGTGAAAGTTCACGAGAGAGAGGTCAACTATCTATCTTTC 867
Query 840 AATCTGTTTAACGAATGGGTATTGGCCACTGCTTCCTCAGACTCCACTGTTGCCTTGTTT 899
|||| ||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 868 AATCCGTTCAACGAATGGGTATTGGCCACAGCTTCCTCAGACTCCACTGTTGCTTTGTTT 927
Query 900 GACCTCCGGAAGCTTAATGCGCCATTACATGTCATGAGCAGCCATGAGGGAGAGGTTTTC 959
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 928 GACCTCCGGAAACTTAATGCGCCATTGCATGTCATGAGCAGCCATGAGGGAGAGGTCTTC 987
Query 960 CAAGTGGAGTGGGATCCTAACCATGAAACAGTACTCGCATCTTCAGGGGAGGACAGAAGG 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 988 CAAGTGGAGTGGGATCCTAACCATGAAACAGTACTCGCATCTTCAGGGGAGGACAGAAGG 1047
Query 1020 CTGATGGTCTGGGACCTGAACAGGGTTGGAGAAGAGCAGCTTGAGATAGAGTTGGATGCA 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1048 CTGATGGTCTGGGACCTGAACAGGGTTGGAGAAGAGCAGCTTGAGATAGAGTTGGATGCA 1107
Query 1080 GAAGATGGTCCACCAGAGTTACTCTTCTCTCACGGAGGCCACAAGGCTAAGATATCAGAC 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1108 GAAGATGGTCCACCAGAGTTACTCTTCTCTCACGGAGGCCACAAGGCTAAGATATCAGAC 1167
Query 1140 TTTGCTTGGAACGAAAACGAGCCTTGGGTCATTGCAAGTGTAGCCGAAGACAACAGTCTT 1199
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1168 TTTGCTTGGAACAAAAACGAGCCTTGGGTCATTGCAAGTGTAGCTGAAGACAACAGTCTT 1227
Query 1200 CAGGTGTGGCAGATGGCGGAAAGCATCTATCGCGATGAAGATGATGCTGAGGACATCAAA 1259
||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1228 CAGGTGTGGCAGATGGCAGAAAGCATCTATCGCGATGAAGAGGATGCCGAGGACATCAAA 1287
Query 1260 GAAGATAGTACACAACAGTCATGAAAATTAAGAAATGATTTGGTCTCTCCATTACTTAA- 1318
||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1288 GAAGATATTACACAACAATCATGAAAATTAAGAAACGATTTGGTCTCTCCATTACTTAAA 1347
Query 1319 GTGTCTTATCTTGCTTTAGCCAGTTTCTGAAAGACAAGCTTTGCGTCTGTATTAGGACTA 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1348 GTGTCTTATCTTGCTTTAGCCAGTTTCTGAAAGACAAGCTTTGCGTCTGTATTAGGATTA 1407
Query 1379 ACATGA-TCAGT-TCTGTTTGTTAATGTAACCATGTTTGGATTTTGTTGGTTTCCTATC 1435
|||||| ||| | |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1408 ACATGAATCA-TCTCTGTTTGTTAATGTAACCATGTT-GGATTTTGTTGGTTTCCTATC 1464
> AT4G35050.1 | Symbols: MSI3, NFC3 | Transducin family protein
/ WD-40 repeat family protein | chr4:16682580-16684848 REVERSE
LENGTH=1544
Length=1544
Score = 1243 bits (673), Expect = 0.0
Identities = 1076/1269 (85%), Gaps = 33/1269 (3%)
Strand=Plus/Plus
Query 3 gagagagaagta-gattgagag-gcgagagaga-TAAT---GGCAGATGAAGGTAAGGAG 56
|||| ||||| | ||| ||||| | |||||||| | || |||||| || ||||| ||
Sbjct 63 GAGA-AGAAGAACGATCGAGAGCGAGAGAGAGAGTGATGGCGGCAGAAGAGGGTAAAGAT 121
Query 57 GAGACGGGAATGGATCAAGTGGAGGAAGATTTCTC-AGTGTGGAAGAA-GAACACACCAT 114
||| ||||| ||||||| ||||| ||||| ||||| | | ||||| || ||||||||| |
Sbjct 122 GAGGCGGGATTGGATCAGGTGGAAGAAGAGTTCTCTA-TTTGGAA-AAGGAACACACCTT 179
Query 115 TTCTCTACGATCTTTTGATCTCTCACCCACTCGAATGGCCGTCTCTCACAGTCCATTGGG 174
|||||||||||||| |||||||||||||||| |||||||| ||||| || |||| ||||
Sbjct 180 TTCTCTACGATCTTATGATCTCTCACCCACTAGAATGGCCTTCTCTTACTCTCCACTGGG 239
Query 175 TTCCATCGACGCCTAATCCTTACGCGGCGGACCCTTACTTCGGCGTCCACAAGCTTATAC 234
|||| |||||||| | ||| ||| || || |||||||| | |||||| |||||||| |
Sbjct 240 TTCCTTCGACGCCGATTCCGTACTCGAAAGATCCTTACTTTGCCGTCCATAAGCTTATCC 299
Query 235 TCGGGACTCATACTTCCGGTAGTGCTCAAGATTTCCTCATGGTCGCCGACGTCGTTACCC 294
| ||||||||||| |||||| |||| |||||||| || ||||||||||| ||||||| |
Sbjct 300 TTGGGACTCATACCTCCGGTGGTGCCCAAGATTTTCTAATGGTCGCCGATGTCGTTATTC 359
Query 295 CGACACCAAACGGTGAACCTGGGTTAGGCGGCCCTA-ATCAGGATCCTATTATTCCTAAG 353
||||||| ||| |||||| || ||||| || | ||||||| ||||| | ||||||
Sbjct 360 CGACACCCGACGCTGAACCAGGATTAGGTGG-AAGAGATCAGGAACCTATCGTCCCTAAG 418
Query 354 GTGGAGATT-AGTCAGAAAATACGTGTTGATGGAGAAGTGAACAGAGCGCGGTGCATGCC 412
||||||||| || ||||| |||||||||||||||||||||||||||||| |||| |||||
Sbjct 419 GTGGAGATTAAG-CAGAAGATACGTGTTGATGGAGAAGTGAACAGAGCGAGGTGTATGCC 477
Query 413 TCAAAAGCCGACGCTTGTGGGTGC-AAAGACAAGTGGGTGTGAGGTGTTTCTGTTTGATT 471
|||||||| || ||||||||||| ||| |||||||| | ||||||||||||||||||||
Sbjct 478 ACAAAAGCCAACTCTTGTGGGTGCTAAA-ACAAGTGGCTCTGAGGTGTTTCTGTTTGATT 536
Query 472 ACGCCAAACA-TGCTGCAACGCCAAAAACGAGTGAGTGTGATCCTGATCTGAGGTTAGTA 530
|||||| || | ||| || ||| |||| |||||||||||||||||||||||| || |
Sbjct 537 ACGCCAGACTCT-CTGGAAAGCCCCAAACAAGTGAGTGTGATCCTGATCTGAGGCTAATG 595
Query 531 GGACATGA-CAAGGAAGGGTATGGACTGTCTTGGAGT-CCTTTCAAGGAGGGTTATCTTC 588
|||||||| |||| |||| |||||| || |||||||| ||||| |||||||||||||||
Sbjct 596 GGACATGAACAAG-AAGGTTATGGATTGGCTTGGAGTTCCTTT-AAGGAGGGTTATCTTT 653
Query 589 TGAGTGGTTCACAGGATCAGAAGA-TCTGTCTTTGGGATGTTTCAGCTACA-CCGCAAGA 646
||||||| ||||| ||||||| || |||| ||||||||||| ||||| || || | ||
Sbjct 654 TGAGTGGCTCACAAGATCAGA-GAATCTGCCTTTGGGATGTCTCAGCGACTGCCACT-GA 711
Query 647 TAAGGTTTTGAATGCAATGTTTGTGTATGAGGGACATGAAAGTG-CTATCGCAGATGTAT 705
||| |||||||| ||||| |||||||||||||||| ||||| | |||| |||||||
Sbjct 712 TAAAGTTTTGAACCCAATGCATGTGTATGAGGGACATCAAAGTATC-ATCGAAGATGTAG 770
Query 706 CATGGCACATGAAGAACGAGAACCTCTTTGGGTCTGCGGGTGAGGATGGCCGATTGGTGA 765
|||||||||||||||| || ||| | || |||||||||||||| ||| | | ||||||||
Sbjct 771 CATGGCACATGAAGAATGAAAACATATTCGGGTCTGCGGGTGATGATTGTCAATTGGTGA 830
Query 766 TATGGGACACACGGACAAACCAAATGCAACACCAAGTGAAAGTTCACGAGAGAGAGGTCA 825
|||||||| |||||| |||||||||||||||||||| |||||||||||||||||| | |
Sbjct 831 TATGGGACTTACGGACTAACCAAATGCAACACCAAGTCAAAGTTCACGAGAGAGAGATAA 890
Query 826 ACTATCTATCTTTCAATCTGTTTAACGAATGGGTATTGGCCACTGCTTCCTCAGACTCCA 885
||||||| |||||||||| || || ||||||||| | ||||| |||||||||||||| |
Sbjct 891 ACTATCTTTCTTTCAATCCCTTCAATGAATGGGTACTAGCCACAGCTTCCTCAGACTCAA 950
Query 886 CTGTTGCCTTGTTTGACCTCCGGAAGCTTAATGCGCCATTACATGTCATGAGCAGCCATG 945
|||| |||||||||||||| || ||||| | |||||||||||||||| |||||| || |
Sbjct 951 CTGTCGCCTTGTTTGACCTTCGTAAGCTGACTGCGCCATTACATGTCCTGAGCAAACACG 1010
Query 946 AGGGAGAGGTTTTCCAAGTGGAGTGGGATCCTAACCATGAAACAGTACTCGCATCTTCAG 1005
||||||| ||||||||||||||||||||||| |||||||||||||| || |||||||| |
Sbjct 1011 AGGGAGAAGTTTTCCAAGTGGAGTGGGATCCCAACCATGAAACAGTGCTTGCATCTTCTG 1070
Query 1006 GGGAGGACAGAAGGCTGATGGTCTGGGACCTGAACAGGGTTGGAGAAGAGCAGCTTGAGA 1065
| ||||||||||| || ||||||||||| | ||||||||||| || ||||||||||| |
Sbjct 1071 GCGAGGACAGAAGACTCATGGTCTGGGATATCAACAGGGTTGGGGATGAGCAGCTTGAAA 1130
Query 1066 TAGAGTTGGATGCAGAAGATGGTCCACCAGAGTTACTCTTCTCTCACGGAGGCCACAAGG 1125
|||||||||||||||||||||||||||| ||| | ||||||||||| |||||||||||||
Sbjct 1131 TAGAGTTGGATGCAGAAGATGGTCCACCTGAGCTGCTCTTCTCTCATGGAGGCCACAAGG 1190
Query 1126 CTAAGATATCAGACTTTGCTTGGAACGAAA-ACGAGCCTTGGGTCAT-TGCAAGTGTAGC 1183
| ||||||||||||||||| |||||| || |||||||||||||||| | ||||||||||
Sbjct 1191 CCAAGATATCAGACTTTGCCTGGAAC-AAGGACGAGCCTTGGGTCATCT-CAAGTGTAGC 1248
Query 1184 CGAAGACAACAGTCTTCAGGTGTGGCAGATGGCGGAAAGCATCTATCGCGATGAAGATGA 1243
||||||||||||||||| || ||||| ||||||||||||||||| ||||| || || ||
Sbjct 1249 TGAAGACAACAGTCTTCAAGTCTGGCAAATGGCGGAAAGCATCTACCGCGAAGATGACGA 1308
Query 1244 TGCTGAGGA 1252
| ||||||
Sbjct 1309 GGATGAGGA 1317
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70732567905
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5