BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480562
Length=1273
Score E
Sequences producing significant alignments: (Bits) Value
AT2G16800.1 | Symbols: | high-affinity nickel-transport family... 1893 0.0
> AT2G16800.1 | Symbols: | high-affinity nickel-transport family
protein | chr2:7285736-7287365 FORWARD LENGTH=1384
Length=1384
Score = 1893 bits (1025), Expect = 0.0
Identities = 1191/1269 (94%), Gaps = 20/1269 (2%)
Strand=Plus/Plus
Query 21 AAAGAGAAGTAGACGCCGCCATGGATAGGCTTTTGCAACCACCGTCTTCTCGCACAATTG 80
|||||||||||||||||||||||||||||||||||||||| || ||||||| | ||||||
Sbjct 69 AAAGAGAAGTAGACGCCGCCATGGATAGGCTTTTGCAACCTCCTTCTTCTCACTCAATTG 128
Query 81 CTCCATCCAAA-CCACAATCAAGACCATCT-CC--GTTACTCCACCGTCTCCACTCGCCG 136
|||| |||||| | ||||||||||||||| || |||||||||||||||||||| ||
Sbjct 129 CTCCCTCCAAATTC-CAATCAAGACCATCTCCCTTATTACTCCACCGTCTCCACTCAACG 187
Query 137 AGTCTTAG---TTTTACCTCCTCTCACCGTCTCGAGTCACGCCGAATCAGCTCCATTTCC 193
| |||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 188 AATCTTAGTACTTTTCCCTCCTCTCGCCGTCTCGAGTCACGCCGAATCAGCTCCATTTCC 247
Query 194 TGCTTCTTCCGCCAGAATCCATCGCCGGATTCATCTCCAGGATTGAATCAGAGTAGTAAT 253
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 248 TGCTTCTTCCGTCAGAATCCATCGCCGGATACATCTCCAGGATTGAATCAGAGTAGTAAT 307
Query 254 TTCTTGATTCCTTCTCCTGAAACCGATG-GATCGAAACCTAATCCAGGATTTATCCAACG 312
||||||||| ||||| || ||||||||| | |||||||||||||||||||||||||||||
Sbjct 308 TTCTTGATTGCTTCTTCTCAAACCGATGCG-TCGAAACCTAATCCAGGATTTATCCAACG 366
Query 313 GATCGTGAGCAGTTTTGAGCAGCGCAAGACCAT-TCCGGCTGGAATGGTTATATTAGTCT 371
||||||||||||||||||||| ||||||||||| | |||| |||||||||||||||||||
Sbjct 367 GATCGTGAGCAGTTTTGAGCAACGCAAGACCATAT-CGGCAGGAATGGTTATATTAGTCT 425
Query 372 CCGCTGTAGCTGCGCTTTTGCTTAATCCCATTCTTGTGCAGCCTGCTTTCGCTAGCTTTC 431
| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 426 CTGCTATAGCTGCGCTTTTGCTTAATCCCATTCTTGTGCCGCCTGCTTTCGCTAGCTTTC 485
Query 432 AAACGGCAACTAATTCTGGTGGAGCTGC--T-GTTGGTGGAAAGCTTCTCAGGACTGAAG 488
||||||| |||||||||||||||||||| | ||||||||||| || |||||||||||||
Sbjct 486 AAACGGCTACTAATTCTGGTGGAGCTGCTGTGGTTGGTGGAAAACTCCTCAGGACTGAAG 545
Query 489 TACTGACAAGTGCTTGGACTGGTTTCTTTGCTGGTTGCTTACACACGTTATCTGGGCCAG 548
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 546 TATTGACAAGTGCTTGGACTGGTTTCTTTGCTGGTTGCTTACACACGTTATCTGGACCTG 605
Query 549 ATCACCTTGCTGCTTTGGCTCCACTTTCGATTGGACGGACGAGAATGGAGAGTGCTGCAG 608
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 606 ATCACCTTGCTGCTTTGGCTCCACTTTCGATTGGACGGACGAGAATGGAGAGTGCTGCGG 665
Query 609 TTGGAGCTCTTTGGGGATGTGGTCATGACGCTGGTCAACTTATCTTTGGTTTATTGTTTC 668
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 666 TTGGAGCTCTTTGGGGATGTGGTCATGACGCTGGTCAGCTCATCTTTGGTTTATTGTTTC 725
Query 669 TGCTTCTAAAAGATAGGCTTCATATTGAAGTTATAAGAACTTGGGGTACAAGAGTCGTTG 728
||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||
Sbjct 726 TGCTTCTAAAAGATAGGCTCCACATTGAAGTTATAAGAACTTGGGGTACAAGAGTTGTTG 785
Query 729 GTTTGACTCTCCTTGTGATTGGTGCTATGGGAATTAAAGAAGCTTCTGAGATTCCGGAAC 788
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 786 GTTTGACTCTCCTTGTGATTGGTGCTATGGGAATCAAAGAAGCTTCTGAGATGCCGGAAC 845
Query 789 CATGTGTTGTTACCTTGGAGAATGGAGAAACAGATGAGAAAAGCTCAAAGAAGAAAAAGA 848
||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 846 CATGTGTTGTTACTTTGGAGAATGGGGAAACAGATGAGAAAAGCTTAAAGAAGAAAAAGA 905
Query 849 TAGGGTTTGCGACATTTGCGACTGGGATTGTTCACGGACTTCAACCGGATGCTCTGATGA 908
|||||||||||||||||||||||||||||||||| || || |||||||||||||||||||
Sbjct 906 TAGGGTTTGCGACATTTGCGACTGGGATTGTTCATGGCCTGCAACCGGATGCTCTGATGA 965
Query 909 TGGTATTGCCTGCACTCGCTCTTCCTTCTCGGTTAGCTGGTGCTTCATTTCTCATCATGT 968
|||||||||||||| | ||||||||||||||| |||| |||||||| |||||||||||||
Sbjct 966 TGGTATTGCCTGCATTGGCTCTTCCTTCTCGGATAGCCGGTGCTTCGTTTCTCATCATGT 1025
Query 969 TCTTGATTGGGACGGTGATTGCGATGGGAAGCTACACAGTGTTTATCGGGTCATGTAGCG 1028
|||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 1026 TCTTGATTGGGACGGTGATTGCGATGGGAAGCTACACAGTTTTTATTGGGTCGTGTAGCG 1085
Query 1029 AAGCGTTGAAAGAGAAGGTTCCTAGGATCACAGAGAAACTAACGTGGGCATCTTCTCTTG 1088
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1086 AAGCGTTGAAAGAGAAAGTTCCTAGGATCACTGAGAAACTAACGTGGGCATCTTCTCTTG 1145
Query 1089 TGGCCATTGGACTTGGATTGGCAATTATTGTCAGCCAGTTCTTTGGATTCAGCCTGTATT 1148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1146 TGGCCATTGGACTTGGATTGGCAATTATTGTCAGCCAGTTCTTTGGATTCAGCCTGTATT 1205
Query 1149 GA-GACAAACATCGTCAAGTCTTTGTAGCTCTCT--GTAGGATAAGATTTTT-GCCTGTA 1204
|| || |||||||||||||||||||||||||||| |||||||||||||||| || ||||
Sbjct 1206 GAAGA-AAACATCGTCAAGTCTTTGTAGCTCTCTCTGTAGGATAAGATTTTTTGCATGTA 1264
Query 1205 CCAACAAAATTTGTATCCTTGCTTCATAATCTTTTCCTTCCATCAAATAGAAGTTTGAGT 1264
||||||||||||||||| |||||||| |||||||| |||| |||||||| ||||||||||
Sbjct 1265 CCAACAAAATTTGTATCTTTGCTTCAGAATCTTTTTCTTCAATCAAATACAAGTTTGAGT 1324
Query 1265 TTGGCTCCC 1273
|||||||||
Sbjct 1325 TTGGCTCCC 1333
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62600079615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5