BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480563
Length=1043
Score E
Sequences producing significant alignments: (Bits) Value
AT2G16850.1 | Symbols: PIP3B, PIP2;8 | plasma membrane intrinsi... 1563 0.0
AT4G35100.1 | Symbols: PIP3, PIP3A, PIP2;7, SIMIP | plasma memb... 822 0.0
AT1G01620.1 | Symbols: PIP1C, TMP-B, PIP1;3 | plasma membrane i... 278 1e-73
AT2G16830.1 | Symbols: | a pseudogene whose sequence is simila... 259 4e-68
> AT2G16850.1 | Symbols: PIP3B, PIP2;8 | plasma membrane intrinsic
protein 2;8 | chr2:7301581-7303437 FORWARD LENGTH=1160
Length=1160
Score = 1563 bits (846), Expect = 0.0
Identities = 993/1061 (94%), Gaps = 21/1061 (2%)
Strand=Plus/Plus
Query 1 TCCATAACAAGAGAGAGAAACCAATCTTTTCAGTGAGTGAG----C-TA-A---GA--TA 49
|||||||| |||||||||||| |||||||| |||||| ||| | || | || ||
Sbjct 1 TCCATAACTAGAGAGAGAAACTAATCTTTTTAGTGAGAGAGAAATCTTAGAGCTGAGCTA 60
Query 50 AGAAAAATGTCAAAAGAAGTGAGTGAAGAAGGAAGACATGGCAAAGACTACGTTGATCCA 109
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 AGAAAAATGTCAAAAGAAGTGAGTGAAGAAGGAAGACATGGCAAAGACTACGTGGATCCA 120
Query 110 CCTCCAGCTCCACTTCTAGACATGGCTGAGATTAAGCTCTGGTCTTTCTACAGAGCTATC 169
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 121 CCTCCAGCTCCACTTCTAGACATGGCTGAGCTTAAGCTCTGGTCTTTTTACAGAGCTATC 180
Query 170 ATTGCAGAGTTCATCGCCACTCTCCTCTTCCTCTACGTAACCGTTGCTACAGTCATTGGC 229
|| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 181 ATCGCAGAGTTCATCGCCACTCTCCTCTTCCTCTATGTAACCGTAGCTACAGTCATTGGC 240
Query 230 CACAAGAACCAAATCGGTCCTTGTGATGGTGTTGGTTTACTCGGCATTGCATGGGCCTTT 289
||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 241 CACAAGAACCAAACCGGTCCTTGTGGCGGTGTTGGTTTACTCGGCATTGCGTGGGCCTTT 300
Query 290 GGTGGCATGATCTTTGTCCTCGTTTATTGCACCGCCGGTATCTCCGGAGGTCATATTAAT 349
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 301 GGTGGCATGATCTTTGTCCTCGTCTATTGCACCGCCGGTATCTCCGGAGGTCACATTAAC 360
Query 350 CCAGCAGTGACATTTGGTCTGTTCTTGGCTCGTAAAGTGTCACTCCTTAGAGCAGTTGCA 409
||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 361 CCAGCTGTGACATTTGGTCTGTTCTTGGCTCGTAAAGTGTCGCTCCCTAGAGCAGTTGCT 420
Query 410 TACATGGTGGCTCAGTGTCTTGGAGCCATTTGTGGAGTTGGACTCGTTGAA-GCCTTTAT 468
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 421 TACATGGTGGCTCAGTGTCTTGGAGCCATTTGTGGAGTTGGACTCGTT-AAGGCCTTTAT 479
Query 469 GATGACTCCATACAAACGTCTAGGTGGCGGAGCTAACACCGTAGCTGATGGTTATAGCAC 528
|||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 480 GATGACTCCATATAAACGTCTCGGAGGCGGAGCTAACACCGTAGCTGATGGTTATAGCAC 539
Query 529 CGGAACTGCTCTTGGTGCTGAGATTATTGGCACATTTGTCTTGGTTTACACTGTCTTCTC 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CGGAACTGCTCTTGGTGCTGAGATTATTGGCACATTTGTCTTGGTTTACACTGTCTTCTC 599
Query 589 TGCCACTGACCCTAAAAGAAGCGCGCGTGACTCTCACGTCCCGGTTTTGGCTCCGTTACC 648
||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 600 CGCCACTGACCCCAAAAGAAGTGCCCGTGACTCTCACGTCCCGGTTTTGGCTCCGTTACC 659
Query 649 TATTGGGTTCGCAGTGTTCATGGTGCATTTGGCTACTATCCCCATCACTGGAACTGGAAT 708
||| ||||| || |||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 660 TATAGGGTTTGCTGTGTTCATGGTGCATTTGGCTACTATCCCCATAACTGGAACTGGGAT 719
Query 709 TAATCCAGCTAGAAGCTTTGGTGCTGCTGTTATCTACAACAATGAAAAAGCTTGGGAGGA 768
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 720 TAATCCAGCCAGAAGCTTTGGTGCTGCTGTTATCTACAACAATGAGAAAGCTTGGGACGA 779
Query 769 CCATTGGATCTTTTGGGTTGGACCATTCGTGGGAGCATTAGCAGCAGCAGCATACCATCA 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CCATTGGATCTTTTGGGTTGGACCATTCGTGGGAGCATTAGCAGCAGCAGCATACCATCA 839
Query 829 ATACATCTTGAGAGCTGCAGCAATCAAAGCCTTGGCTTCATTCCGCAGCAACCCAACCAA 888
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 840 ATATATCTTGAGAGCTGCAGCAATCAAAGCTTTGGCTTCATTCCGCAGCAACCCAACCAA 899
Query 889 TTGATGATGCATGAG-CTTATTA-A-CAATTTGAGCTCTGTTTTGT-GTGT--TTAATGA 942
|||||||| |||||| ||| ||| | ||||||||| ||| |||| | |||| |||||||
Sbjct 900 TTGATGATTCATGAGACTTCTTAGAACAATTTGAGATCTTTTTTTTTGTGTGCTTAATGA 959
Query 943 GAGATATTTGTGTGTTTTAATTTGGTGTTATCGGATTTATTCATTTTCAATAGTTTAGTT 1002
|||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||| ||
Sbjct 960 GAGATATTTGTGTGTTTTAATTTGATGTAATCGGATTTATTCATTTTCA-TAGTTTAATT 1018
Query 1003 TGGTTTGATTCATCTTTGTACCGTTGCTTTCTTTCATGTAG 1043
|||||| |||||||||||| |||||||||||||||||||||
Sbjct 1019 TGGTTTAATTCATCTTTGT-CCGTTGCTTTCTTTCATGTAG 1058
> AT4G35100.1 | Symbols: PIP3, PIP3A, PIP2;7, SIMIP | plasma membrane
intrinsic protein 3 | chr4:16708598-16710248 FORWARD
LENGTH=1207
Length=1207
Score = 822 bits (445), Expect = 0.0
Identities = 726/860 (84%), Gaps = 26/860 (3%)
Strand=Plus/Plus
Query 52 AAAAATGTCAAAAGAAGTGAGTGAAGAAGG---AA--GA-CATGGCAAAGACTACGTTGA 105
||| ||||| ||||||||||| |||||||| || | ||||| ||||||||||| ||
Sbjct 71 AAAGATGTCGAAAGAAGTGAGCGAAGAAGGCAAAACCCACCATGGAAAAGACTACGTGGA 130
Query 106 TCCACCTCCAGCTCCACTTCTAGACATGGCTGAGAT-TAAGCTCTGGTCTTTCTACAGAG 164
||| || |||||||| ||||| ||||||| |||| | || | |||||||||||||||||
Sbjct 131 TCCTCCACCAGCTCCTCTTCTCGACATGGGTGAGCTCAAATC-CTGGTCTTTCTACAGAG 189
Query 165 CTATCATTGCAGAGTTCATCGCCACTCTCCTCTTCCTCTACGTAACCGTTGCTACAGTCA 224
|| |||| || ||||||||||| || ||||||||||||||||| ||||| ||||| ||||
Sbjct 190 CTCTCATCGCTGAGTTCATCGCTACACTCCTCTTCCTCTACGTCACCGTCGCTACTGTCA 249
Query 225 TTGGCCACAAGAACCAAATCGGTCCTTGTGATGGTGTTGGTTTACTCGGCATTGCATGGG 284
| ||||||||||| |||| |||||||||||| || ||||||||||| || || || ||||
Sbjct 250 TCGGCCACAAGAAGCAAACCGGTCCTTGTGACGGCGTTGGTTTACTTGGTATCGCTTGGG 309
Query 285 CCTTT-GGTGGCATGATCTTTGTCCTCGTTTATTGCACCGCCGGTATCTCCGGAGGTCAT 343
|||| ||||| |||||||| |||||||| || ||||||||||||||||| || |||||
Sbjct 310 -CTTTCGGTGGTATGATCTTCGTCCTCGTCTACTGCACCGCCGGTATCTCTGGTGGTCAC 368
Query 344 ATTAATCCAGCAGTGACATTT-GGTCTGTTCTTGGCTCGTAAAGTGTCACTCCTTAGAGC 402
||||| ||||| ||||| ||| |||||||||||||| ||||| || || | | ||||
Sbjct 369 ATTAACCCAGCTGTGAC-TTTCGGTCTGTTCTTGGCCCGTAAGGTCTCTTTGGTGCGAGC 427
Query 403 AGTTGCATACATGGTGGCTCAGTGTCTTGGAGCCATTTGTGGAGTTGGACTCGTTG-AAG 461
||| |||||| | |||||||||||||||||||||||||| || || ||| || |||
Sbjct 428 TCTTGGTTACATGATAGCTCAGTGTCTTGGAGCCATTTGTGGTGTGGGTTTCG-TGAAAG 486
Query 462 CCTTT-ATGATGACTCCATACAA-ACGTCTAGGTGGCGGAGCTAACACCGTAGCTGATGG 519
|||| |||| ||||| ||||| || ||| ||||| |||||||||||||||||||| ||
Sbjct 487 -CTTTCATGAAAACTCCTTACAACAC-TCTTGGTGGAGGAGCTAACACCGTAGCTGACGG 544
Query 520 TTATAGCACCGGAACTGCTCTTGGTGCTGAGATTATTGGCACATTT-GT-CTTGGTTTAC 577
||| |||| ||||||||||| || |||||||||||||| || ||| || ||| ||||||
Sbjct 545 TTACAGCAAAGGAACTGCTCTCGGAGCTGAGATTATTGGAAC-TTTCGTCCTT-GTTTAC 602
Query 578 ACTGTCTTCTCTGCCACTGACCCTAAAAGAAGCGCGCGTGACTCTCACGTCCCGGTTTTG 637
|| || |||||||| ||||||||||| |||||||| |||||||||||| |||| ||||||
Sbjct 603 ACCGTTTTCTCTGCAACTGACCCTAAGAGAAGCGCTCGTGACTCTCACATCCCCGTTTTG 662
Query 638 GCTCC-GTTACCTATTGGGTTCGCAGTGTTCATGGTGCATTTGGCTACTATCCCCATCAC 696
||||| || || ||||| || || |||||||||||||||||||||||||||||||| ||
Sbjct 663 GCTCCACTT-CCAATTGGATTTGCTGTGTTCATGGTGCATTTGGCTACTATCCCCATTAC 721
Query 697 TGGAACTGGAATTAATCCAGCTAGAAGCTTTGGTGCTGCTGTTATCTACAACAATGAAAA 756
||||||||| || || |||||||||||||||||||||||||||||||||||||| || ||
Sbjct 722 TGGAACTGGTATCAACCCAGCTAGAAGCTTTGGTGCTGCTGTTATCTACAACAACGAGAA 781
Query 757 AGCTTGGGAGGACCATTGGATCTTTTGGGTTGGACCATTCGTGGGAGCATTAGCAGCAGC 816
|| ||||| ||||| ||||||||||||||||| || ||| |||||||| |||| |||||
Sbjct 782 GGCGTGGGATGACCAATGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGC 841
Query 817 AGCATACCATCAATACATCTTGAGAGCTGCAGCAATCAAAGCCTTGG-CTTCATTCCGCA 875
||| ||||| |||||||| ||||||||| ||||||| || ||||||| || | ||||| |
Sbjct 842 AGCTTACCACCAATACATATTGAGAGCTTCAGCAATTAAGGCCTTGGGCT-CGTTCCGAA 900
Query 876 GCAACCCAACCAATTGATGA 895
||||| ||||||||| ||||
Sbjct 901 GCAACGCAACCAATTAATGA 920
> AT1G01620.1 | Symbols: PIP1C, TMP-B, PIP1;3 | plasma membrane
intrinsic protein 1C | chr1:225665-227302 REVERSE LENGTH=1308
Length=1308
Score = 278 bits (150), Expect = 1e-73
Identities = 418/546 (77%), Gaps = 24/546 (4%)
Strand=Plus/Plus
Query 272 GGCATTGCATGGGCCTTT-GGTGGCATGATCTTTGTCCTCGTTTATTGCACCGCCGGTAT 330
|||||||| |||| |||| |||||||||||||||| ||| || || || || || || ||
Sbjct 391 GGCATTGCTTGGG-CTTTCGGTGGCATGATCTTTGCCCTTGTCTACTGTACTGCTGGAAT 449
Query 331 CTCCGGAGGTCATATTAATCCAGCAGTGACATTTGGTCTGTTCTTGGCTCGTAAAG-TGT 389
||| || || || || || ||||| ||||||||||||||||||||||||||||| | |||
Sbjct 450 CTCTGGTGGGCACATAAACCCAGCGGTGACATTTGGTCTGTTCTTGGCTCGTAA-GCTGT 508
Query 390 CACTC-CTTAGAGCAGT-TGCATACATGGTGGCT-CAGTGTCTTGGAGCCATTTGTGGAG 446
|| | | ||||| || | ||||| ||| | || ||||| |||||||| || || |
Sbjct 509 CATTGACG-AGAGCTGTCTTT-TACATCGTGA-TGCAATGTCTCGGAGCCATCTGCGGCG 565
Query 447 TTGGACTCGTTGAAGCCTTT-ATGATGACTCCATAC-AAACGTCTAGGTGGCGGAGCTAA 504
||| | || ||| ||| | | | ||| ||| |||| ||| || || ||||| ||
Sbjct 566 CCGGAGTTGTCAAAGGCTTCCA-GCCAAATCCTTACCAAAC-TCTCGGCGGAGGAGCCAA 623
Query 505 CACCGTAGCTGATGGTTATAGC-ACCGGAACTGCTCTTGG-TGCTGAGATTATTGGCACA 562
||| || ||| | || || | | | || ||| | |||| ||||||||| || || ||
Sbjct 624 CACAGTCGCTCACGGCTACA-CTAAGGGCTCTGGT-TTGGGTGCTGAGATAATCGGAACC 681
Query 563 TTTGTC-TTGGTTTACACTGTCTTCTCTGCCACTGAC-CCTAAAAGAAGCGCGCGTGACT 620
|| ||| ||| | ||||| |||||||| ||||||||| || || |||||||| |||||||
Sbjct 682 TTCGTCCTTG-TCTACACGGTCTTCTCCGCCACTGACGCC-AAGAGAAGCGCTCGTGACT 739
Query 621 CTCACGTCCCGGTTTTGGCTCCGTTACCTATTGGGTTCGCAGTGTTCATGGTGCATTTGG 680
| ||||| ||| ||||||| || | || || || ||||| |||||| |||| || ||||
Sbjct 740 CCCACGTTCCGATTTTGGCACCACTCCCAATCGGATTCGCTGTGTTCTTGGTTCACTTGG 799
Query 681 CTACTATCCCCATCACTGGAACTGGAATTAATCCAGCTAGAAG-CTTTGGTGCTGCTGTT 739
| || || || ||||| ||||| |||||||| |||||||| || ||| || ||||| |
Sbjct 800 CGACGATTCCAATCACCGGAACAGGAATTAACCCAGCTAGGAGTCTT-GGAGCTGCAATC 858
Query 740 ATCTACAACAATGAAAAAGCTTGGGAGGACCATTGGATCTTTTGGGTTGGACCATTCGTG 799
||||||||||| || | |||||||| ||||| ||||| || ||||| ||||||||| |
Sbjct 859 ATCTACAACAAGGACCACGCTTGGGACGACCACTGGATATTCTGGGTCGGACCATTCATT 918
Query 800 GGAGCA 805
||||||
Sbjct 919 GGAGCA 924
> AT2G16830.1 | Symbols: | a pseudogene whose sequence is similar
to plasma membrane intrinsic protein 3 (PIP3) | chr2:7291906-7292982
FORWARD LENGTH=1077
Length=1077
Score = 259 bits (140), Expect = 4e-68
Identities = 163/174 (94%), Gaps = 2/174 (1%)
Strand=Plus/Plus
Query 461 GCCTTTATGATGACTCCATACAAACGTCTAGGTGGCGGAGCTAACACCGTAGCTGATGGT 520
||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 612 GCCTTCATGATGACTCCATACAAACGTCTCGGAGGCGGAGCTAACACCGTAGCTGATGG- 670
Query 521 TATAGCACCGGAACTGCTCTTGGTGCTGAGATTATTGGCACATTTGTCTTGGTTTACACT 580
| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 671 -ACAGCACCGGAACAGCTCTTGGTGCTGAGATTATTGGCATATTTGTCTTGGTTTACACT 729
Query 581 GTCTTCTCTGCCACTGACCCTAAAAGAAGCGCGCGTGACTCTCACGTCCCGGTT 634
|||||||||||| ||||||| |||||||||||||||||||||||||| ||||||
Sbjct 730 GTCTTCTCTGCCTCTGACCCCAAAAGAAGCGCGCGTGACTCTCACGTTCCGGTT 783
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51138361646
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5