BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480564
Length=1137
Score E
Sequences producing significant alignments: (Bits) Value
AT2G16860.1 | Symbols: | GCIP-interacting family protein | chr... 1823 0.0
> AT2G16860.1 | Symbols: | GCIP-interacting family protein | chr2:7303919-7306671
REVERSE LENGTH=1255
Length=1255
Score = 1823 bits (987), Expect = 0.0
Identities = 1092/1141 (96%), Gaps = 14/1141 (1%)
Strand=Plus/Plus
Query 1 aaaaaaaaaa-aaTTATCGTCCGCGAAATATCTGGTGTTCTTCTCATAGTTGCAGATTCC 59
|||||||||| |||||||||||||| |||||||||||||||||| || |||| ||||||
Sbjct 40 AAAAAAAAAATCATTATCGTCCGCGAGATATCTGGTGTTCTTCTCGTACTTGCGGATTCC 99
Query 60 TCCGAATCGTTTCTCCACAGGTTGGTTTCTTGACGCTTGGAAGTATGGTTAGTGAGAGAA 119
||||||| |||||| |||| ||||||| ||||||||||||||||||||||||||||
Sbjct 100 TCCGAATTGTTTCTTCACA-----GTTTCTTAACGCTTGGAAGTATGGTTAGTGAGAGAA 154
Query 120 GAGTGCATCCGGACTGTATAAACGCTTCAAATCCTTATCACGAGTGTGTTGAGTATTGCT 179
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 155 GAGTGCATCCGGATTGTATAAACGCTTCAAATCCTTATCACGAGTGTGTCGAGTATTGCT 214
Query 180 TTAAGAAAATCGCTGAAGCAAAGGCCAGATTCGAGAAGCAGAATGCTGGATTAGCTAAAG 239
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 215 TTAAGAAAATCGCTGAAGCAAAGGCCAGATTCGAGAAGCAGAACACTGGATTAGCTAAAG 274
Query 240 TTCACGAGCAGACGAGAGAGCCGCTCGATGATAAAAGAATAGAGGAAGATAGTTCAGAAG 299
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 275 TTCACGAGCAGACGAGGGAGCCGCTCGATGATAAAAGAATAGAGGAAGATAGTTCAGAAG 334
Query 300 AAGAAGAGGAGGAAGAGGATAACCAAGAACCTCAAGTAGACGTGACTCAACTTACAGGGA 359
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 335 AAGAAGAGGAGGAAGAGGATAACCAAGAACCTCAAGTAGATGTAACTCAACTTACAGGGA 394
Query 360 GGCAGAAGAAGTTGTTTGAGTTGAGACTTAAGATGAATGAAGCAAGAAAATCCAATCAGA 419
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 395 GACAAAAGAAGTTGTTTGAGTTGAGACTTAAGATGAATGAAGCAAGAAAATCCAATCAGA 454
Query 420 CGGATGTCGGGAGTGAAAAGAAGAAAATGGAAGCACCAACAGAGACAAAAGGAATCTCAA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 455 CGGATGTCGGGAGTGAAAAGAAGAAAATGGAAGCACCAACAGAGACAAAAGGAATCTCAA 514
Query 480 AACAGAAATGGTTGGAGGGGAGGAAGAAAAAGATTGGGAAACTTCTCGATGCTAATGGTT 539
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 515 AACAGAAATGGTTGGAGGGGAGGAAGAAAAAGATTGGGAAACTTCTTGATGCTAATGGTT 574
Query 540 TAGATATGACAAAGGCTTATATGCTCGATACTCAAGAAGCAGCAGAAACAAAATACAAAA 599
||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 575 TAGATATGACACAGGCTTATATGCTCGATACTCAAGAAGCAGCTGAATCAAAATACAAAA 634
Query 600 AGTGGGAAAAGGAACCTACGCCTGCTGGTTGGGATGTCTTTAACCAGAAGACGTTATACA 659
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 635 AATGGGAAAAGGAACCTACGCCTGCGGGTTGGGATGTCTTTAACCAGAAGACGTTATACA 694
Query 660 ACGCATATAAGAAACGGACAAAGAACATTCAGGTTGATCTAGAGGACTATAACAGAATGA 719
||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 695 ACGCATACAAGAAACGGACAAAGAACATTCAGGTTGATCTGGAGGAGTATAACAGAATGA 754
Query 720 GAGCAGCTGATCCAGAGTTTTACCGTGAGGCCTCAAGCTTGCAATATGGGAAGGCTCCAA 779
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 755 GAGCAGCTGATCCAGAGTTTTACCGTGAGGCCTCAAGCTTGCAATATGGAAAGGCTCCAA 814
Query 780 AAACTTCGCAAGATAAGATAGATAAGATGGCAAAAGAGCTCTTAGACAGAGAGCAAAAGC 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 AAACTTCGCAAGATAAGATAGATAAGATGGCAAAAGAGCTCTTAGACAGAGAGCAAAAGC 874
Query 840 GACAAGAGTTTAGTAGGAGGAGAAAGTTCCGGGAAGAGAAGGATATCGATTCCATCAACG 899
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 875 GACAAGAGTTTAGCAGGAGGAGGAAGTTCCGGGAAGAGAAGGATATCGATTCCATCAACG 934
Query 900 ACAGAAACGAGCATTTCAACAAGAAAATCGAGCGTGCGTTTGGGAAATACACACTGGAGA 959
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 935 ACAGAAACGAGCATTTCAACAAGAAAATCGAGCGTGCGTTTGGGAAATACACGCTGGAGA 994
Query 960 TCAAAAACAACTTGGAGCGAGGAACTGCATTACCCGACTAAGCTACTTGAGCTCACATGT 1019
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 995 TCAAAAACAACTTGGAACGAGGAACTGCATTACCCGACTAAGCTACTTGAGCTCACATGT 1054
Query 1020 TGAAAACAAGGGAATGGATTTCTGGTTCGGAAAGTAAACTTATATGCTGTTGTCTGCTTA 1079
|| |||||||||||||||||||||||||| |||||||||| || ||||||||||| |||
Sbjct 1055 TGGAAACAAGGGAATGGATTTCTGGTTCG-AAAGTAAACT-AT--GCTGTTGTCTGATTA 1110
Query 1080 ATTGTCCTTAAATTTATCCTT---GAGAGAACTAAGTTGTAGAATGAACTTTTCTTTAGC 1136
|||||||||||||| |||||| ||||||||||| ||||||||||||| ||||||||||
Sbjct 1111 ATTGTCCTTAAATT-ATCCTTCTTGAGAGAACTAAATTGTAGAATGAACGTTTCTTTAGC 1169
Query 1137 C 1137
|
Sbjct 1170 C 1170
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55772805495
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5