BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480566
Length=2371
Score E
Sequences producing significant alignments: (Bits) Value
AT2G16880.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 3729 0.0
> AT2G16880.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr2:7312146-7314533 REVERSE LENGTH=2388
Length=2388
Score = 3729 bits (2019), Expect = 0.0
Identities = 2271/2391 (95%), Gaps = 23/2391 (1%)
Strand=Plus/Plus
Query 1 GGATGATCATCAAATCAATTTCCACTGATTTCCAACAAAAATGGCGACTTTGAAGCCACC 60
|||||||||||| || |||||||| ||||| |||||||||||||||||||| ||||||||
Sbjct 1 GGATGATCATCAGATAAATTTCCATTGATTGCCAACAAAAATGGCGACTTTAAAGCCACC 60
Query 61 CGAATCTCAATTACTAAAAACCCTAACATCAATCCTCACATCAGAGAAAACCCATTTGTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 61 CGAATCTCAATTACTAAAAACCCTAACATCAATCCTCACATCAGAGAAAACCCATTTCCT 120
Query 121 CGAAACCCTAAATCCCTACATTCCTCAAATCACACAGcctctcctttcctctctcctctc 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 121 CGAAACCCTAAATCCCTACATTCCTCAAATCACACAGCCTCTCCTTACCTCTCTCCTCTC 180
Query 181 ttctcctTCACTCGCTAAGAAACCAGAAACCCTAGTTTCTTTCTTCCAATGGGCTCAATC 240
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 181 TTCTCCTTCACTCGCTAAGAAACCAGAAACCCTAGTATCTTTCTTCCAATGGGCTCAAAC 240
Query 241 TTCAATCCCCGAAGCATTTCCATCTGATTCACCTCTTCCGCTTCTCTCCGTTGTCCGTTC 300
|||||||||||||||||||||||| |||||||||||||| ||| ||||||| ||||||||
Sbjct 241 TTCAATCCCCGAAGCATTTCCATCGGATTCACCTCTTCCACTTATCTCCGTCGTCCGTTC 300
Query 301 TCTTCTCTCTCACCACAAATTCGCCGACGCCAAGtctcttctcgtctcctacattcgcac 360
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 301 TCTTCTCTCTCACCACAAATTCGCCGACGCCAAGTCTCTTCTCGTCTCCTATATCCGCAC 360
Query 361 ctccgatgcatctctctctctttgcaactctctccttcacccgaatcttcatctctcgcc 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 361 CTCCGATGCATCTCTCTCTCTTTGCAACTCTCTCCTTCACCCGAATCTTCATCTATCACC 420
Query 421 tccaccttctAAAGCTCTCTTCGACATTGCTCTCAGTGCTTATCTTCATGCGGGAAAGCC 480
|||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||
Sbjct 421 TCCACCTTCTAAAGCTCTATTCGACATTGCTCTTAGTGCTTATCTTCATGAGGGAAAGCC 480
Query 481 TCACGTTGCGTTACAGATTTTCCAGAAGATGATTCGATTAAAGCTCAAACCAAATCTTCT 540
|||||||||||||||||| |||||||||||||||||||||||||| || |||||||| ||
Sbjct 481 TCACGTTGCGTTACAGATCTTCCAGAAGATGATTCGATTAAAGCTTAAGCCAAATCTGCT 540
Query 541 CACTTGCAACACTCTTCTCATTGGTTTAGTCAGGTACCCTTCTAGCTTCTCTATCGCGAG 600
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 541 CACTTGCAATACTCTTCTCATTGGTTTAGTCAGGTACCCTTCTAGCTTCTCTATCTCAAG 600
Query 601 TGCTAGAGAAGTGTTTGATGATATGGTTAAGGTTGGTGTTTCGCTTGATGTGAAAACTTT 660
||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||
Sbjct 601 TGCTAGAGAAGTGTTTGATGATATGGTTAAGATTGGTGTTTCGCTAAATGTGCAAACTTT 660
Query 661 CAATGTTTTGGTTAATGGGTATTGCTTAGAGGGCAAGCTTGAGGATGCTTTAGGAATGTT 720
||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||
Sbjct 661 CAATGTTTTGGTTAATGGGTATTGCTTGGAAGGTAAGCTTGAGGATGCTTTAGGAATGTT 720
Query 721 AGAGAGGATGGTTAGTGAATTCAATGTTAATCCTGATAATGTTACTTACAATACGATTTT 780
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 721 AGAGAGGATGGTTAGTGAATTCAAGGTTAATCCTGATAATGTTACTTACAATACGATTTT 780
Query 781 GAAAGCGATGTCTAAGAAAGGGCGTTTGAGTGATGTTAAGGATTTGTTGTTAGATATGAA 840
|||||| |||||||||||||| |||||||||||| ||||||| |||||||| ||||||||
Sbjct 781 GAAAGCAATGTCTAAGAAAGGTCGTTTGAGTGATCTTAAGGAATTGTTGTTGGATATGAA 840
Query 841 GAGGAATGGATTGGTGCCAAATAGGGTTACTTACAATAATTTAGTGTATGGTTACTGTAA 900
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 841 GAAGAATGGATTGGTGCCAAATAGGGTTACTTATAATAATTTAGTGTATGGTTACTGTAA 900
Query 901 GTTGGGTTCGTTGAAAGAAGCATTTCAGATTGTGGAGCTGATGAAGCAAACTAATATATT 960
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 901 GTTAGGTTCGTTGAAAGAAGCATTTCAGATTGTGGAGCTGATGAAGCAAACTAATGTATT 960
Query 961 GCCGGATCTTTGTACCTATAACATGTTGATCAACGGGCTTTGCAATGCGGGTAGTATTAG 1020
||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| ||
Sbjct 961 ACCGGATCTTTGTACCTATAACATTTTGATCAATGGGCTTTGCAATGCGGGGAGTATGAG 1020
Query 1021 GGAAGGTCTTGAATTGATGGATGCGATGAAGAGTTTGAAGTTACAGCCCGATGTGGTTAC 1080
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 GGAAGGTCTTGAATTAATGGATGCGATGAAGAGTTTGAAGTTACAGCCCGATGTGGTTAC 1080
Query 1081 TTACAATACATTGATTGATGGGTGTTTCGAATTGGGGCTTAGTTTGGAGGCTAAGAAGTT 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1081 TTACAATACATTGATTGATGGGTGTTTCGAATTGGGGCTTAGTTTGGAGGCTAGGAAGTT 1140
Query 1141 AATGGAGCAAATGGAAAATGATGGAGTTAAACCTAACCAAGTGACTCATAATATATCTCT 1200
|||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||
Sbjct 1141 GATGGAGCAAATGGAAAATGATGGAGTCAAAGCTAACCAAGTGACTCATAATATCTCTCT 1200
Query 1201 TAAGTGGCTTTGTAAGGAAGAGAAAAGGGAAGAGGTTACTAGAAAGGTTAAGGAATTGGT 1260
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1201 TAAGTGGCTTTGTAAGGAAGAGAAAAGGGAAGCGGTTACTAGAAAGGTTAAGGAATTGGT 1260
Query 1261 GGAAATGCACGGGTTTTCTCCTGATATAGTAACCTATCATACTCTAATTAAAGCGTATTT 1320
||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1261 GGACATGCACGGGTTTTCTCCTGATATAGTAACTTATCATACTCTGATTAAAGCGTATTT 1320
Query 1321 GAAAGTAGGAGATTTGAGTGGTGCCCTTGAGATGATGCGTGAGATGGGGCAAAAAGGCAT 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1321 GAAAGTAGGAGATTTGAGTGGTGCCCTTGAGATGATGCGTGAGATGGGGCAAAAAGGGAT 1380
Query 1381 TAAGATGAATACTATTACCCTTAATACCATTCTTGATGCTCTATGTAAAGAGAGGAAAGT 1440
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 1381 TAAGATGAATACTATTACCCTTAATACCATTCTTGATGCTCTATGTAAGGAGAGGAAACT 1440
Query 1441 TGATGAGGCTCACAATTTGCTGAATAGTGCGCACAAACGAGGATATATTGTTGACGAGGT 1500
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1441 TGATGAGGCTCACAATTTGCTGAATAGTGCGCACAAACGAGGATTTATTGTTGACGAGGT 1500
Query 1501 TAGTTATGGCACATTAATCATGGGATACTTCAGGGAAGAAAAAGTGGAGAAAGCTTTGGA 1560
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1501 TACTTATGGCACATTAATCATGGGATTCTTCAGGGAAGAAAAAGTGGAGAAAGCTTTGGA 1560
Query 1561 GATGTGGGATGAGATGAAGA-GGATAAAGATTACTCCTACCGTGACCACGTTCAACTCTT 1619
|||||||||||||||||||| || |||||||||||||||| |||| ||||||||||||||
Sbjct 1561 GATGTGGGATGAGATGAAGAAGG-TAAAGATTACTCCTACAGTGAGCACGTTCAACTCTT 1619
Query 1620 TAATTGGAGGTCTCTGTCACCATGGAAAAACTGAGCTAGCAATGGAGAAATTCGATGAGC 1679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 TAATTGGAGGTCTCTGTCACCATGGAAAAACTGAGCTAGCAATGGAGAAATTCGATGAGC 1679
Query 1680 TTGCTGAGAGTGGTTTACTTCCTGATGACTGTACTTTCAATTCAATCATCCTTGGATACT 1739
|||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||
Sbjct 1680 TTGCTGAGAGTGGTTTGCTTCCTGATGACAGTACTTTCAATTCAATCATCCTCGGATACT 1739
Query 1740 GCAAAGAAGGACGAGTTGAGAAAGCATTTGAGTTTTATAATGAATCCATCAAACACTCTT 1799
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1740 GCAAAGAAGGACGAGTTGAGAAAGCATTCGAGTTTTATAATGAATCCATCAAACACTCTT 1799
Query 1800 TCAAGCCCGATAACTATACATGCAACATTCTTCTCAATGGTCTTTGTAAGGAGGGTATGA 1859
||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1800 TCAAGCCTGATAACTATACATGCAACATTCTCCTCAATGGTCTTTGTAAGGAAGGTATGA 1859
Query 1860 CAGAAAAGGCTCTCAATTTCTTCAATACGCTTATA-ACGGAGAGAGAGGTTGATACAGTT 1918
||||||||||||||||||||||||| ||||| ||| | ||||||||||||||||||||||
Sbjct 1860 CAGAAAAGGCTCTCAATTTCTTCAACACGCTAATAGA-GGAGAGAGAGGTTGATACAGTT 1918
Query 1919 ACATACAACACGATGATCTCGGCTTTCTGCAAGGACAGGAAGTTAAAAGAAGCATATGAT 1978
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1919 ACATACAACACGATGATCTCGGCTTTCTGCAAGGACAAGAAGTTAAAAGAAGCATATGAC 1978
Query 1979 CTTCTATCAGAAATGGAGGAGAAAGGGCTAGAGCCTGATCGGTTTACATACAACAGTATT 2038
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 1979 CTTCTATCAGAAATGGAGGAGAAAGGACTAGAGCCTGATCGGTTTACATACAACAGTTTT 2038
Query 2039 ATCACTTCGCTTATGGAAGATGGTAAGCTGAGTGAAGCAGATGAATTGTTAAATAAATTT 2098
|||| || |||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 2039 ATCAGTTTGCTTATGGAAGATGGTAAGCTGAGTGAAACAGATGAATTGTTAAAGAAATTT 2098
Query 2099 TCTGGAAAATTTGGATCGATGAAGCAGAATTTACAGGCAGAGACAGAGAAAAATCCAGCA 2158
|| ||||| |||||||||||||||| | ||||||||| ||||||||||||||||||||||
Sbjct 2099 TCCGGAAAGTTTGGATCGATGAAGCGGGATTTACAGGTAGAGACAGAGAAAAATCCAGCA 2158
Query 2159 ACAAGTGAATCAAAGGAGGAACTTAACACTGAAGCTATTGCTTATTCAGATGTAATAAAT 2218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2159 ACAAGTGAATCAAAGGAGGAACTTAACACTGAAGCTATTGCTTATTCAGATGTAATAGAT 2218
Query 2219 GAACTTTGTAGTAGAGGAAGATTAAAGGAGCATTCTACATCTTACACTGGGTGAAGGAGA 2278
||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||
Sbjct 2219 GAACTTTGTAGTAGAGGAAGATTAAAGGAGCATTCTAGATCTTACACTAGTTGAAGGAGA 2278
Query 2279 GACT--TTTTT-GT--------------ATTTCGATTTTCTCAAAGCATACTTATTAGTT 2321
||| ||||| || ||||||||||||||||||||||||||||| ||
Sbjct 2279 AACTCCTTTTTTGTGGTTTCTTTTTTGTATTTCGATTTTCTCAAAGCATACTTATTACTT 2338
Query 2322 GTTACAGAAAGACATT-TGAATGTAGTTTTCATGTGATGATGATGATTATT 2371
|||||||||||||||| | ||||||||||| ||||||||||||||||||||
Sbjct 2339 GTTACAGAAAGACATTGT-AATGTAGTTTTTATGTGATGATGATGATTATT 2388
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117720278025
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5