BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480570
Length=1543
Score E
Sequences producing significant alignments: (Bits) Value
AT2G16900.1 | Symbols: | Arabidopsis phospholipase-like protei... 2194 0.0
> AT2G16900.1 | Symbols: | Arabidopsis phospholipase-like protein
(PEARLI 4) family | chr2:7323615-7326221 REVERSE LENGTH=1764
Length=1764
Score = 2194 bits (1188), Expect = 0.0
Identities = 1426/1537 (93%), Gaps = 31/1537 (2%)
Strand=Plus/Plus
Query 1 AATTAGTAGGTGTGAAC---T-A-TGAGGA-GAGGATCAGCTTTTCTTTTGTTCCCTTTT 54
||| ||||||||||||| | | ||||| ||||||||||||| |||||||||||||||
Sbjct 8 AATGAGTAGGTGTGAACAAATGAGAGAGGAGGAGGATCAGCTTTGCTTTTGTTCCCTTTT 67
Query 55 CTCG--TCT-CAGCTTCCTTGTTGTCAACTTCTCGAAGCCTTTGATTGATTACAACTTCT 111
|||| ||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 68 CTCGTCTCTGCAGCTTCCTTGTTGTCAACTTCTGGAAGCCTTTGATTGATTGCAACTTCT 127
Query 112 ACCTTCATTCTCATGCCCATTTATTGTT-TAATTTAATAGTCAGTCTCGTCGAATCTTCA 170
| || ||||||| ||| |||||| | || || |||||||||| ||||||||||||||||
Sbjct 128 ATCTCCATTCTCCTGCTCATTTAATATTCCAA-TTAATAGTCAATCTCGTCGAATCTTCA 186
Query 171 ATTTTTAAAAGCTTTTGGTCAAATCAAATGT-ATGCAAAGTCAGATCAAAACctcttctt 229
|||||| |||||||||||||||||||||||| |||||||| |||| ||||||||| ||||
Sbjct 187 ATTTTTTAAAGCTTTTGGTCAAATCAAATGTAATGCAAAGACAGACCAAAACCTCCTCTT 246
Query 230 cttcttcttatatactt-c-ct-ctacaaaatctctttttacttccatcttctctGCTCA 286
||||||||||||||||| | || ||||||||||||| ||||||||||||||||||||| |
Sbjct 247 CTTCTTCTTATATACTTCCTCTCCTACAAAATCTCTATTTACTTCCATCTTCTCTGCTAA 306
Query 287 AGACCTTTCTTCACCATTACC-ATTTTCCCGGTAACTCTTGCTTCTGATTGAATCTAGAT 345
|||||||||||||||||| || ||||| || || ||||| ||||||||||||||||||
Sbjct 307 AGACCTTTCTTCACCATTCCCAATTTT-CC-GT---TCTTGTTTCTGATTGAATCTAGAT 361
Query 346 ATTGATTTAAGCTATGGATGTCAATCGGAAAGCTCACCCGGATTGTCGATATTCTTCGAA 405
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 362 ATTGA-TTAAGCTATGGATGTCAATCGGAAAGCTCACCCGGATTGTCGATATTCTTCAAA 420
Query 406 TCCTTTCCATGAATGTGCTTCAGATTGTTTAGAGAAGATCTCTCAAGGCCGTGGAAATAA 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TCCTTTCCATGAATGTGCTTCAGATTGTTTAGAGAAGATCTCTCAAGGCCGTGGAAATAA 480
Query 466 GCATTCAAAGAAGCAAGGTGCAAAGATTCTTAGCCTCCCTGGGAGTTTTGGTAAGAAAAA 525
| ||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||
Sbjct 481 GAATTCAAAGAAGCAAGGTTCAAAGATTCTTAGCCTTCCGGGGAGTTTTGGTAAGAAAAA 540
Query 526 GACAGAGTCACAGCCACCATCACCTCTGAATACAAGGAACTATCAGAACGGTGCTGCTAA 585
||| |||||||||||||| ||||| |||| |||||||||||||||||| |||||||||||
Sbjct 541 GACGGAGTCACAGCCACCGTCACCCCTGAGTACAAGGAACTATCAGAATGGTGCTGCTAA 600
Query 586 TTCCCCAAAGATTCATCAATCAAGACCTTCACCAGTAGCTGTCAAGAAGACGACGGTTCC 645
| |||||||| ||| ||||||||||||||||||||||||| | ||||||||| | |||||
Sbjct 601 TACCCCAAAGGTTCGTCAATCAAGACCTTCACCAGTAGCTATGAAGAAGACGCCAGTTCC 660
Query 646 AGAAGCGAACAAATCGTTCCCCTCTCTATCACCTGATGAAATCTCTATTGACCTCAACGG 705
||||||||||||||| || | |||| |||| |||||| |||||||||||||||||||||
Sbjct 661 AGAAGCGAACAAATCTTTACACTCTTTATCGTCTGATGGAATCTCTATTGACCTCAACGG 720
Query 706 TCAGCATGATTCTTTCAACCATAAGGCA-GAGAAGCCATCGCGAACTGTTCCTCTATCCC 764
|||| |||||||||| |||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 721 TCAGAATGATTCTTTTAACCATAA-GCAGGAGAAGCCATCGCGAACTGTTCCTCTATCCC 779
Query 765 CAAACAGAATGGCTGATGGTGGCAAA-CCTGTATCACCACGACCTCGAGGGCATGACCAC 823
||||||| ||||||||| |||| ||| ||| ||||||||||||||| ||||||||| |||
Sbjct 780 CAAACAGCATGGCTGATCGTGGGAAACCCT-TATCACCACGACCTCAAGGGCATGAACAC 838
Query 824 AGTGGCAAGAATGAAACAGCCAGTGAGATTAGTGTGTTTAATGTTGTAAGCCCTCCAAGA 883
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 839 AGTGGCAAGAATGACACAGCCAGTGAGATTAGTTTGTTTAATGTTGTAAGCCCTCCAAGA 898
Query 884 TCATGTGCC-A--atgatgatgatgatgatgatgaAAACAATGATTATGAGGAGGGAGTG 940
||||| ||| | |||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 899 TCATGCGCCAATGATGATGATGATGATGATGATGAAAACAATGGTTACGAGGAGGGAGTG 958
Query 941 GAGTTAGACCTTATATCAGTAATGTCGGACTCGTGTGTTTCTGTTGGAAAATACCGTGTG 1000
|||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct 959 GAGTTAGACCTTATATCAGTAATGTCAGACTCATGTGTTTCGGTTGGAAAATACCGTGTG 1018
Query 1001 AACTCAGGTGTTTCCACAATCCTACAGTCAATCATCGACAAACACGGAGACATAGCTGCA 1060
|||||| |||||||||||||||||||||||||||| || ||||||||||||||||| |||
Sbjct 1019 AACTCAAGTGTTTCCACAATCCTACAGTCAATCATTGATAAACACGGAGACATAGCAGCA 1078
Query 1061 AACTGCAAGCTAGAATCAGCATCAATGCGATCCCGATACCTAGAGTGCCTATGCTCATTG 1120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1079 AACTGCAAGCTAGAATCAGCATCAATGCGATCCCGATACCTAGAGTGTCTATGCTCATTG 1138
Query 1121 ATGCAAGAACTTGGATCAACCCCGGTCGGG-CAGTTAACCGAACTAAAAGTAAAAGAGAT 1179
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 1139 ATGCAAGAACTTGGATCAACCCCGGT-GGGTCAGTTAACCGAACTAAAAGTAAAAGAGAT 1197
Query 1180 GGTCGCAGTTCTCAAGGACTTGGAGTCTGTGAACATCGATGTTGGCTGGATGCGTTCAGT 1239
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1198 GGTCGCGGTTCTCAAGGACTTGGAGTCTGTGAACATCGACGTTGGCTGGATGCGTTCGGT 1257
Query 1240 TCTTGAGGAGTTTGCTCAGTATCAAGAGAACACAGACTCGGAGAAAGAGAGGCAAGAAGG 1299
||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 1258 TCTTGAGGAGTTTGCTCAGTATCAAGAGAACACAGACTCAGAGAAGGAGAGACAAGAAGG 1317
Query 1300 ATTGGTAAGGTCTAAGAAACAGGAAATGGAGGTTCAAGAAGCTGATTTGGCTCGGATTGA 1359
|||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 1318 ATTGGTGAGGTCTAAGAAACAAGAAATGGAGATTCAAGAAGCTGATTTGGCTCGGATTGA 1377
Query 1360 GAAGGAAGTAGCGGAAGCGAGGTTGAGGGTCGAGGAGATGAAAGCAGAGCTGGCTGAGCT 1419
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1378 GAAGGAAGTAGCGGAGGCGAGGTTGAGGGTCGAGGAGATGAAAGCAGAGCTCGCTGAGCT 1437
Query 1420 CGAGACAGAGCGGTTGCGGATGGAGGAGATGGGATTTAAGGTCGAGAAATATAAAGGGAA 1479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 CGAGACAGAGCGGTTGCGGATGGAGGAGATGGGATTTAAGGTCGAGAAATATAAAGGGAA 1497
Query 1480 GTCATTTCTTGATGAACTTCTATGATGTTTGTTAATA 1516
| | ||||||||||||||||| ||||| |||||||||
Sbjct 1498 GACGTTTCTTGATGAACTTCTGTGATGGTTGTTAATA 1534
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76154226765
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5