BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480573
Length=2058
Score E
Sequences producing significant alignments: (Bits) Value
AT2G16940.2 | Symbols: | Splicing factor, CC1-like | chr2:7342... 2202 0.0
> AT2G16940.2 | Symbols: | Splicing factor, CC1-like | chr2:7342607-7347408
REVERSE LENGTH=2278
Length=2278
Score = 2202 bits (1192), Expect = 0.0
Identities = 1355/1430 (95%), Gaps = 26/1430 (2%)
Strand=Plus/Plus
Query 645 ACGCCATAAAGATAAGAAGGATGATAAGGTAGAGCCTGAGGCTGATCCTGAAAGAGATCA 704
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 813 ACGCCATAAAGATAAGAAGGAGGATAAGGTAGAGCCTGAGGCTGATCCTGAAAGAGATCA 872
Query 705 GAGAACAGTTTTTGCCTATCAGATTGCTTTGAGGGCAACAGAAAGGGATGTTTATGAGTT 764
||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 873 GAGAACAGTTTTTGCATATCAGATTGCTTTGAGGGCAACTGAAAGGGATGTATATGAGTT 932
Query 765 CTTTTCCAGAGCTGGAAAGGTGCGAGATGTACGGATAATAATGGATCGAATTTCCAGGCG 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 933 CTTTTCCAGAGCTGGAAAGGTGCGAGATGTACGGATAATAATGGATCGAATTTCCAGGCG 992
Query 825 TTCCAGGGGAATAGGGTATGTGGAGTTTTATGATACAATGTCTGTCCCTATGGCTATTGC 884
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 993 TTCCAGAGGAATAGGGTATGTGGAGTTTTATGATACAATGTCTGTCCCTATGGCTATTGC 1052
Query 885 TCTATCTGGACAACCTCTTCTTGGTCAGCCTGTTATGGTAAAACCTTCTGAAGCTGAGAA 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1053 TCTATCTGGACAACCTCTTCTTGGTCAGCCTGTTATGGTAAAACCTTCTGAAGCTGAGAA 1112
Query 945 GAATCTTGTTCAGTCAACAACTGCTGCTGCTGGAGCAGGGGGGATGTTGGGCCCCTACTC 1004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1113 GAATCTTGTTCAGTCAACAACTGCTGCTGCTGGAGCAGGGGGGATGTTGGGCCCCTACTC 1172
Query 1005 CGGGGGAGCTAGACGTCTTTATGTTGGTAACCTCCACATTAACATGTCAGAAGATGATCT 1064
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1173 CGGGGGAGCTAGGCGTCTTTATGTTGGTAACCTCCACATTAACATGTCAGAAGATGATTT 1232
Query 1065 GCGAAAGGTTTTTGAACCATTTGGGAGTGTGGAGCTGGTGCAAGTACCTCGTGATGAAAC 1124
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1233 GCGAAAGGTATTTGAATCATTTGGGAGTGTGGAGCTGGTGCAAGTACCTCGTGATGAAAC 1292
Query 1125 TGGCCTCTGCAAAGGATTTGGTTTTGTTCAGTTCGCCCGCCTGGAGGATGCTAGAAACGC 1184
||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1293 TGGTCTCTGCAAAGGATTTGGTTTTGTTCAGTTTGCCCGGCTGGAGGATGCTAGAAACGC 1352
Query 1185 ACTGAATCTAAATGGGCAGTTGGAGATTGCAGGTCGTGCAATCAAGGTGTCAGCTGTAAC 1244
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1353 ACTGAATCTAAATGGGCAGTTGGAAATTGCAGGTCGTGCAATCAAGGTGTCAGCTGTAAC 1412
Query 1245 TGATCAAACTGAAGTCCCAGAAGCTGGACAGACGCAAACCACCGGTGATTTGGATGATGA 1304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1413 TGATCAAACTGAAGTCCCAGAAGCTGGACAGACGCAAACCACCGGTGATTTGGATGATGA 1472
Query 1305 TGATGGAGGTGGCCTGTCTCTGAATGCACAATCGCGGGCGCTTCTCATGCGAAAGCTCGA 1364
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1473 TGATGGAGGTGGCCTGTCTCTGAATGCACAATCGCGGGCGCTTCTCATGCAAAAGCTCGA 1532
Query 1365 TCGCAGTGGAACTGCATCAAGCACTGGCCTTACTACAGCTGCATCTATTCA-CGGTGGAG 1423
|||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||
Sbjct 1533 TCGCAGTGGAACTGCATCGAGCACTGGCCTTACTACAGCTGCATCT-TTCAACGGTGGAG 1591
Query 1424 TTTCTACAATCTCTTCATTGGCAGCTCCTGCACTTGTACAAGGGTCTTTTCCTGCTGTTG 1483
|||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1592 TTTCAACAATCTCTTCGTTGGCAGCTCCTGCTCTTGTACAAGGGTCTTTTCCTGCTGTTG 1651
Query 1484 CTGGACTCGCAGGGGCCAGCATTATTCCCGGTGTAATA---G---------ACCCAGTTG 1531
|||||||||||||| || |||||||||||||||| ||| | ||||| |||
Sbjct 1652 CTGGACTCGCAGGGTCCGGCATTATTCCCGGTGTTATACCAGCTGGTTTCGACCCAATTG 1711
Query 1532 GTGCCCCCAGCGAATGTCTGCTGCTTAAAAACATGTTTGATCCATCCACAGAGACTGAAG 1591
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1712 GTGTCCCCAGCGAATGTCTGCTGCTTAAAAACATGTTTGATCCATCCACAGAGACTGAAG 1771
Query 1592 ATGATTTTGACAAGGATATAGAAGAAGATGTTAAAGACGAATGCTCCAAATTCGGAAATC 1651
|||||||||| |||||||| |||||||||||||||| |||||||||||||||||||| |
Sbjct 1772 ATGATTTTGATGAGGATATAAAAGAAGATGTTAAAGAAGAATGCTCCAAATTCGGAAAAC 1831
Query 1652 TGAATCATATCTATGTTGACAAGAACAGCGTTGGTTTTGTCTACCTGAGATTTGAGAATG 1711
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1832 TGAATCATATCTTTGTTGACAAGAACAGCGTTGGTTTTGTCTACCTGAGATTTGAGAATG 1891
Query 1712 TGCAAGCAGCCATAGGTGCACAACGTGCTCTCCATGGAAGATGGTTTGCTGGAAAGATGA 1771
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1892 CGCAAGCAGCCATAGGTGCACAACGTGCTCTCCATGGAAGATGGTTTGCTGGAAAGATGA 1951
Query 1772 TTACTGCGACTTACATGACTACAGAGGCGTACGAGGCCAAATTCCCCGAGAGTAAGGTCG 1831
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1952 TTACTGCGACTTACATGACTACAGAGGCTTACGAGGCCAAATTCCCCGAGAGTAAGGTCG 2011
Query 1832 GCTAAAGGTACTGAGAAAAAGTTGTTATTATGGTTGTCAAAGCATAAATGAAGATAAAAT 1891
||||||| | |||| |||||| ||| ||| ||| | |||||||||||||||||| | |
Sbjct 2012 TTTAAAGGTGCCGAGACAAAGTTTTTAGTATCGTTATTAAAGCATAAATGAAGATACA-T 2070
Query 1892 CTGCGGTGACAAATCCAATCTTGTGTCAAATTTATGTTTATGCTT--TTACCCGCTTCTT 1949
||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||
Sbjct 2071 CTGCGGTGACAAATCCAATATTGAGTCAAATTTATGTTTATGCTAGATTACCCGCTTCTT 2130
Query 1950 GTATTCT-TAAGTCTCGGTAATGTGTGTGCCGGTAACTTTGACACCTTTTCAAGTTTTAA 2008
||||| | ||||||||||||||||||||| ||| ||||||||||||||| || |||
Sbjct 2131 GTATT-TGTAAGTCTCGGTAATGTGTGTGACGGAAACTTTGACACCTTT-CAC-TTT--- 2184
Query 2009 TTCAGTATTTGTATTATGCTAACATGTTTTAGATTTCATAAGAATGTTTT 2058
||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2185 --CAGTATTTGTATTATGCGAACATGTTTTAGATTTCATAAGAATGTTTT 2232
Score = 981 bits (531), Expect = 0.0
Identities = 610/646 (94%), Gaps = 13/646 (2%)
Strand=Plus/Plus
Query 1 CTTCGTCTTCTTCACAGAGCTTTTTTCTTGCCCT--AGATAGCGCGAGCGGGAGATTCCA 58
|||||||| |||||||||||||| |||||||||| ||||| | ||||||||||||||||
Sbjct 31 CTTCGTCTCCTTCACAGAGCTTTATTCTTGCCCTAGAGATA-C-CGAGCGGGAGATTCCA 88
Query 59 GATTGAGAGCAGCTTCGAGTTTCTCTCTCCTCGCCGTTCCTCTTCGCTTCTTCGAGTTTC 118
|||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||
Sbjct 89 GATTGAGAGCAGCTTCGAGTCTCTCTCTCCTCGCCGTTCCTTTTCGCTTCTTCAAGTTTC 148
Query 119 GTTACCAGAGAGATTCTAGGTATTGAGGGAGAGAGTGGTGTAGAATGGACTTTGATGAAT 178
||| |||||||||||||||||||| || ||| | |||||||||||||||||| |
Sbjct 149 GTTGCCAGAGAGATTCTAGGTATT------GA-AGT--TATAGAATGGACTTTGATGAGT 199
Query 179 ATGAGTACTTAGAGAAGACAGTTGAAAATCCTCACTTGGAGAATGAAGTTGGGAATGGTG 238
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 200 ATGAGTACTTAGAGAAGACAGTTGAAAATCCTCACCTGGAGAATGAAGTTGGTAATGGTG 259
Query 239 GTGGTGATGAGAAAGTCAAATCTGATGGGAAAGAGCGGAGTAGAAGCTCAAGGCATAGGG 298
||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||
Sbjct 260 GTGGTGATGAGAAAGTCAAATCTGAAGGGAAAGAGAGGAGTAGGAGCTCAAGGCATAGGG 319
Query 299 GTGACGAGAAGAAGGAGAGGGATGAAGACGAGGATGGTCGGCGTTCTAAGCGGTCGAGAT 358
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 320 GTGACAAGAAGAAGGAGAGGGATGAAGATGAGGATGGTCGGCGTTCTAAGCGGTCGAGAT 379
Query 359 CTCACCACCGTTCACGTTCTAGGGACAGAGAGAGGGATAGGCATAGAAGTAGCCGGGAGC 418
| || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 380 CGCATCACCGTTCACGTTCTAGGGACAGAGAGAGGGATAGGCATAGAAGTAGCAGGGAGC 439
Query 419 ACagagatagagatcgtgaaaaggatatagataaagaagaaagaaatgggaaagatagag 478
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 440 ACAGAGATAGAGATCGTGAAAAGGATGTAGATAAAGAAGAAAGAAATGGGAAAGATAGAG 499
Query 479 agagggacagagataaggatCGAGACAGTAAAGGGCGTGACCATGAAAAAGATCGGTCAA 538
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 500 AGAGGGACAGAGATAAGGATCGAGACAGTAAAGGGCGTGACCATGAAAAAGATCGGTCAC 559
Query 539 GAAGGAGTAGAAGTCGATCAGAGCGACATCGGAGTCAGGAAAGAGAAAAGAGCCTGGAAA 598
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 560 GAAGAAGTAGAAGTCGATCAGAGCGACATCGGAGTCAGGAAAGAGAAAAGAGCTTGGAAA 619
Query 599 TTGAACCTAAGGAAAGAGAGACCAAGGACCGGGATAGAGATCGCAG 644
| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 620 TAGAACCTAAGGAAAGAGAGACCAAGGACCGGGATAGAGATCGCAG 665
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102007507440
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5