BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480576
Length=1659
Score E
Sequences producing significant alignments: (Bits) Value
AT2G16960.1 | Symbols: | ARM repeat superfamily protein | chr2... 2050 0.0
AT2G16950.1 | Symbols: TRN1, ATTRN1 | transportin 1 | chr2:7353... 678 0.0
> AT2G16960.1 | Symbols: | ARM repeat superfamily protein | chr2:7364683-7368963
FORWARD LENGTH=1644
Length=1644
Score = 2050 bits (1110), Expect = 0.0
Identities = 1466/1630 (90%), Gaps = 56/1630 (3%)
Strand=Plus/Plus
Query 58 GAGTGGAATTTAAGAGCATGCAGTGCAAAATTTATTGGCATTCTCGCTAATGTATTTGGA 117
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 43 GAGTGGAATTTAAGAGCATGCAGTGCAAAATTTATTGGTATTCTCGCTAATGTATTTGGA 102
Query 118 GATGAAATCCTTCTAACACTCATGCCTCTTATTAAGGCAAAACTATCAAGATAT-GATGA 176
|||||||| |||||||||||||||||||||||| ||||||||||||||| || | |||||
Sbjct 103 GATGAAATTCTTCTAACACTCATGCCTCTTATTGAGGCAAAACTATCAAAAT-TCGATGA 161
Query 177 TGAGACTTGGAAAGAAAGGGAAGTTGCTGT-TTATGCTCTTGGAGCTATTGCTGAAGGAT 235
||||||||||||||| ||||||| ||| || || |||| ||||||| |||||||||||||
Sbjct 162 TGAGACTTGGAAAGAGAGGGAAGCTGCAGTGTT-TGCTTTTGGAGCCATTGCTGAAGGAT 220
Query 236 GCAATAAAATTTTCTACCCTCACTTTGCCTTGTTACAGATTGTAACAATCCTTCGTCGTC 295
|||||| |||| |||||||| | || ||||||| |||||||||||||||
Sbjct 221 GCAATAGTTTTTTTTACCCTCA--------T-TT---GATTGTAGCAATCCTTCGTCGTC 268
Query 296 TTTTAAATGATCAATTTCCTCTCGTACGAAGAATAACGTGCTGGACACTTTATCAATTTG 355
||||| ||||||||| ||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 269 TTTTAGATGATCAATCTCCTCTCGTACGAAGGATAACGTGTTGGACACTTTATCAATTTG 328
Query 356 GCACATATGTTTTTGAGGAAAATAATTCGGTGAATAGTGAACTCTTTAGAAAAGTTCTTA 415
||||||||||||||||||||| ||||| || ||||||| ||||||||| ||||||||||
Sbjct 329 GCACATATGTTTTTGAGGAAAGTAATTTGGAGAATAGTAAACTCTTTACAAAAGTTCTTC 388
Query 416 AGGGTCTTC-TTCTCAAAGTTTTGGATACGAACACT-TGTGTCCAGGAAGCTGCATGTTT 473
| ||| ||| || ||||| |||||||| |||||| | || ||||||||||||||||||||
Sbjct 389 ATGGTTTTCGTT-TCAAACTTTTGGATTCGAACA-TCTGGGTCCAGGAAGCTGCATGTTT 446
Query 474 AGCTTTGACAACTCTTGAAGAGGATGCTGGTGA-AAACTTAGTACCACACCT-GAAAAAG 531
|||||||||||| ||||||||||||||||||| ||| |||||||||||||| ||||||
Sbjct 447 GGCTTTGACAACTTTTGAAGAGGATGCTGGTGACAAA-TTAGTACCACACCTGGAAAAA- 504
Query 532 ATATTAAC-ACAGCTAATGCGCGCTTTTGGAAAGTATCAG-AGACGGAACTTAAAAGTTC 589
||||| || ||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 505 ATATT-ACAACAGCTAATGCGCGCTTTTGGAAAGTATCAGAAGA-GGAACTTAAAAGTTC 562
Query 590 TTTTTGATGCTATTAGAGCACTAGCAGATTCAGTTGGAATTGATCTGAATAAGCCTTCTT 649
|| ||||||||||||||||||||||||||||||||||||| ||||||| |||| | |||
Sbjct 563 TTCTTGATGCTATTAGAGCACTAGCAGATTCAGTTGGAATCAATCTGAACAAGCGTGCTT 622
Query 650 ATCTTAAGATTTTGATTCCCCCACTGGTTTCGACGTCGGAACAAATTT-CAGATTCAGAT 708
|| |||||||||||||||||||||||||||| |||| ||||||||||| || ||||||||
Sbjct 623 ATATTAAGATTTTGATTCCCCCACTGGTTTCAACGTTGGAACAAATTTCCA-ATTCAGAT 681
Query 709 AAAGATGTAATTCCATTGCTAAAATGCTTCACATCCATTTCTAAGGCTTTAGAAGTAGGA 768
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 682 AAAGATGTAATTCCATTGCTGAAGTGCTTCACATCCATTTCTAAGGCTTTAGAAGTAGGA 741
Query 769 TTCGCTCCATTTTCTTTGTATGTTTTTGAGAGGTGCATGGATATCCTCCAACTACAACAG 828
|||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 742 TTCGCTCCATTTTCTTGGTATGTTTTCGAGAGGTGCATGGATATCCTTCAACTACAACAG 801
Query 829 CTAGCTAAGGTTGATCATGATTTTGCTGAGGTTGAATACGACCCAAAA-ATCGTTGTTTG 887
|||||||||||||||||||||||||| | |||| ||||||||| |||| ||||| |||||
Sbjct 802 CTAGCTAAGGTTGATCATGATTTTGCCGGGGTTCAATACGACC-AAAATATCGTCGTTTG 860
Query 888 TTCTCTTGAATTTGTTTCTGGAGTTGCTGAAGGGCTTGGCAGTGGGATAGAGTCTCTGCT 947
||||||||||||| |||||||| || || ||||||||| ||||||||||||||||||| |
Sbjct 861 TTCTCTTGAATTTTTTTCTGGACTTTCTAAAGGGCTTGTCAGTGGGATAGAGTCTCTGGT 920
Query 948 TTCACAAAGTAATCTAAGGGATATGCTTCTCAAGTGTTGCATGGATGAAACTCCTGATGT 1007
|||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||
Sbjct 921 TTCACAAAGTAATCTAAGGGATATGCTTCTTAAGTGTTTCATGGATGAAACTCCAGATGT 980
Query 1008 TAGAGAAAGTGCTTTTGCCCTTATTTGTGATCTTACAAAAAGTGAAAATTTTAGTGGAGA 1067
|||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||
Sbjct 981 TAGAGAAAGTGCTTTTGCCCTTATTTGTCATCTTACAAAAAGTGCAAATTTTAGCGGAGA 1040
Query 1068 AAACCTTAGTGCTGCAAATAATGCTTGTAAAGCCATTGGAGAATTAGC--T----TT-C- 1119
||||||| |||||| ||||||||||||||||| || ||||||||||| | || |
Sbjct 1041 AAACCTTTCTGCTGCGAATAATGCTTGTAAAGCAATAGGAGAATTAGCGGTCAAGTTTCT 1100
Query 1120 ---AA-GAACAAACTCGTGAATGATAGGAACTCAATGTTTCAGTTTCCTCAAGAAGTCTC 1175
|| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1101 GGTAAAGAACAAACTCGTGAATGATATGAACTCAATGTTTCAGTATCCTCAAGAAGTCTC 1160
Query 1176 ACCAGTTGTGACCAATGTTGTCTCTTCCTTAGGCCTGATTATTCAAAAT-GGAGAGACAC 1234
|||| |||||||||||||||||| ||| |||||| ||||||||||| | ||||||||||
Sbjct 1161 ACCAATTGTGACCAATGTTGTCTATTCATTAGGCATGATTATTCAAC-TCGGAGAGACAC 1219
Query 1235 TAGAATTGAAGAGTGCAACTACACTAGTTGAATACATTGCAATTGAACTAGCTATGAACA 1294
|||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1220 TAGAGTTGAAGAGTTTAACTACACTAGTTGAATACAATGCAATTGAACTAGCTATGAACA 1279
Query 1295 GTGCAATTACCATTGGGATACTAGCATTTATTCATCCAGACCTCGGTGCACCGCA-C-AT 1352
||||||||||| |||||||||||||| |||| |||||||||| |||||| | | | ||
Sbjct 1280 GTGCAATTACCGTTGGGATACTAGCACGGATTCGTCCAGACCTCAGTGCAC-G-ATCCAT 1337
Query 1353 AGAGAACTTCATGAAGCCTTGGTGCATGAGATTGGCAACGTTAGATGATAACAGTACAAA 1412
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1338 TGAGAACTTCATGAAGCCTTGGTGCATGAGATTGGCAACGTTAGATGATGACAGTACAAA 1397
Query 1413 AGAAACTGCATTTCGAGGGTTATGTGCAATGGTTAAGGTGAATCCATCAAGATATGTCAG 1472
||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1398 AGAAAATGCATTTCAAGGGTTATGTGAAATGGTTAAGGTGAATCCATCAAGATATGTCAG 1457
Query 1473 CTCGGTTGCTTTTATATGCTTAGCCATTGCAAGCTGGCAAGAAAC--AAGAAGCATTGTC 1530
||| |||||||| ||||||||||| || ||||||||| |||| | || || || |||
Sbjct 1458 CTCCGTTGCTTTCATATGCTTAGCGATCGCAAGCTGGAAAGATATGGAA-AA-CAAGGTC 1515
Query 1531 ATCCAAAACGAATTCTCCCAAGTGCTAA-ACGACTATAAAAACATGCTTGGAAGAAACTC 1589
||||||| |||||||||| ||||||| | | | |||||||||||||||||||| ||||||
Sbjct 1516 ATCCAAAGCGAATTCTCCAAAGTGCTGATAGG-CTATAAAAACATGCTTGGAAAAAACTC 1574
Query 1590 ATGGGAAGAATGTCTTTCTGTTTTGGATCCTGTTTTTAAGGAAAGGCTTGCTGAAAGGTA 1649
||||||||||||||| ||||||||||||||| || ||||||||||||||||| |||||
Sbjct 1575 ATGGGAAGAATGTCTCTCTGTTTTGGATCCTCTTGCTAAGGAAAGGCTTGCTGCGAGGTA 1634
Query 1650 TCAAGTGTGA 1659
||||||||||
Sbjct 1635 TCAAGTGTGA 1644
> AT2G16950.1 | Symbols: TRN1, ATTRN1 | transportin 1 | chr2:7353847-7361202
FORWARD LENGTH=3345
Length=3345
Score = 678 bits (367), Expect = 0.0
Identities = 802/1006 (80%), Gaps = 53/1006 (5%)
Strand=Plus/Plus
Query 60 GTGGAATTTAAGAGCA-TGCAGTGCAAAATTTATTGGCATTCTCGCTAATGTATTTGGAG 118
||||||||||||| | || |||||| | ||||| | ||||| ||||||| |||||||
Sbjct 1199 GTGGAATTTAAGA-AAGTGTAGTGCAGCAGCTATTGACGTTCTCTCTAATGTTTTTGGAG 1257
Query 119 ATGAAATCCTTCTAACACTCATGCCTCTTATTAAGGCAAAA-CTATCAAG-ATATGATGA 176
|||||||||||| | |||||||||| || ||| | | |||| |||| || | || |||
Sbjct 1258 ATGAAATCCTTCCAGCACTCATGCCCCTAATTCA-GAAAAATTTATC-AGCTTCTGGTGA 1315
Query 177 TGAGACTTGGAAAGAAAGGGAAGTTGCTGTTTAT-GCTCTTGGAGCTATTGCTGAAGGAT 235
|||| | |||||| ||||||||| |||||||| | ||||| || |||||||||||||| |
Sbjct 1316 TGAGGCCTGGAAACAAAGGGAAGCTGCTGTTT-TGGCTCTCGGCGCTATTGCTGAAGGCT 1374
Query 236 GCAATAAAAT--T-TTCTACCCTCACTTTGCCTTGTTACAGATTGTAACAATCCTTCGTC 292
|| || ||| | || ||||||||| ||| | || |||| || || | |||| ||
Sbjct 1375 GC-AT-GAATGGTCTT-TACCCTCAC-TTGTC-TG----AGATCGTGGCATTTCTTCTTC 1425
Query 293 GTCTTTTAAATGATCAATTTCCTCTCGTACGAAGAATAACGTGCTGGACACTTTATCAAT 352
||||||| ||||| |||| || ||| |||| || ||| | |||||||| |||| || ||
Sbjct 1426 CTCTTTTAGATGATAAATTCCCGCTCATACGGAGCATATCTTGCTGGACGCTTTCTCGAT 1485
Query 353 TTGGCACA-TATGTTTTTGAGGAAAAT---AATTCG--GTGAATAGTGAACTCTTTAGA- 405
|||||| | ||| || | |||||| | ||| || | | || ||||| ||| ||
Sbjct 1486 TTGGCA-AGTATCTTATCCAGGAAAGTGGCAATCCGAAG-GGTTA-TGAACAATTT-GAG 1541
Query 406 AAAGTTCTTAAGGGTCTTCTTCTCAAAGTTTTGGATACGAACACTTGTGTCCAGGAAGCT 465
|||||||||| ||||||||| | || | | ||||||||||||| | || ||||| |||
Sbjct 1542 AAAGTTCTTATGGGTCTTCTCCGCAGACTCTTGGATACGAACAAGCGGGTTCAGGAGGCT 1601
Query 466 GCATGTTTAGC-TTTGACAACTCTTGAAGAGGATGCTGGTGAAAACTTAGTACCACACCT 524
|| |||| ||| |||| ||||| ||||||||||||||| |||| | ||||| ||||||||
Sbjct 1602 GCCTGTTCAGCTTTTG-CAACTGTTGAAGAGGATGCTGCTGAAGAGTTAGTGCCACACCT 1660
Query 525 -GAAAAAGATATTAACA-CAGCTAATGCGCGCTTTTGGAAAGTATCAGAGACGGAACTTA 582
| | ||| | || || || ||| |||||||||||||||||||||||||||| |||
Sbjct 1661 GGGTGTA-ATACT-GCAGCATCTGATGTGCGCTTTTGGAAAGTATCAGAGACGGAATTTA 1718
Query 583 A-AAGTTCTTTTTGATGCTATTAGAGCACTAGCAGATTCAGTT-G-GAATTGA-TCTGAA 638
| || || ||| |||||||||| || |||| |||||||||||| | ||| || | ||||
Sbjct 1719 AGAA-TTGTTTATGATGCTATTGGAACACTGGCAGATTCAGTTAGAGAA--GAGT-TGAA 1774
Query 639 TAAGCCTTCTTATCTTAAGATTTTGATTCCCCCACTGGTTTCGACGTCGG-AACAAATTT 697
|||||| |||||||| ||||| |||| || ||||||||| | | || || ||||| |||
Sbjct 1775 CAAGCCTGCTTATCTTGAGATTCTGATGCCTCCACTGGTTGCAAAGT-GGCAACAACTTT 1833
Query 698 CAGATTCAGATAAAGATGTAATTCCATTGCTAAAATGCTTCACATCCATTTCTAAGGCTT 757
|| |||||||||||||| || ||||||||||| | ||||| |||||||||||| ||||||
Sbjct 1834 CAAATTCAGATAAAGATCTATTTCCATTGCTAGAGTGCTTTACATCCATTTCTCAGGCTT 1893
Query 758 TAGAAGTAGGATTCGCTCCATTTTCTTTGTATGTTTTTGAGAGGTGCATGGATATCCTCC 817
||| |||||||||||||||||| || | |||||| |||| |||||||||||| |||
Sbjct 1894 TAGGTGTAGGATTCGCTCCATTTGCTCAGCCTGTTTTCCAGAGATGCATGGATATCATCC 1953
Query 818 AACTACAACAGCTAGCTAAGGTTGATCATGATTTTGCTGAGGTTGAATACGACCCAAAAA 877
|| | || ||||| ||||||||| ||| || || ||||| || | | || ||| | ||
Sbjct 1954 AATTGCAGCAGCTGGCTAAGGTTAATCCTGCTTCTGCTGGGGCTCAGTATGACAGAGAAT 2013
Query 878 TCGTTGTTTGTTCTCTTGAATTTG-TTTCTGGAGTTGCTGAAGGGCTTGGCAGTGGGATA 936
| ||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||
Sbjct 2014 TTATTGTTTGTTCTCTTG-ATTTGCTTTCTGGACTTGCTGAAGGGCTTGGCAGTGGGATA 2072
Query 937 GAGTCTCTGCTTTCA-CAAAGTAATCTAAGGGATATGCTTCTCAAGTGTTGCATGGATGA 995
||||||||| || || |||||||| ||||||||| |||||||||| |||||||| |||||
Sbjct 2073 GAGTCTCTGGTT-CAACAAAGTAACCTAAGGGATCTGCTTCTCAATTGTTGCATTGATGA 2131
Query 996 AACTCCTGATGTTAGAGAAAGTGCTTTTGCCCTT-ATTTGTGATCT 1040
| || ||||||| ||| |||||||||||||| || || |||||||
Sbjct 2132 AGCTGCTGATGTCAGACAAAGTGCTTTTGCC-TTGATGGGTGATCT 2176
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81977489985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5