BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480581
Length=1533
Score E
Sequences producing significant alignments: (Bits) Value
AT2G16990.1 | Symbols: | Major facilitator superfamily protein... 2211 0.0
> AT2G16990.1 | Symbols: | Major facilitator superfamily protein
| chr2:7383035-7387854 FORWARD LENGTH=1506
Length=1506
Score = 2211 bits (1197), Expect = 0.0
Identities = 1378/1463 (94%), Gaps = 21/1463 (1%)
Strand=Plus/Plus
Query 84 TCGGCAAACATAGGCTAAAAGGTGATGGAGGATGGAATTGGAGGGCTGAGACACATGTTG 143
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 41 TCGGCAAGCATAGGCTAAAAGGTGATGGAGGATGGAATTGGAGGGCTGAGACACATGTTG 100
Query 144 ACGACGG-TCTTCTTTTCTGCCTTCGCCGGATTCATGGTAGTACCTGTGATTACCGATGT 202
|||||| | ||| ||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 101 GCGACGGTTTTTC-TTTCTGCCTTCGCCGGATTCATGGTAGTACCAGTGATTACTGATGT 159
Query 203 TACCGTCGCCGCCGTGTGTTCCGGCCCAGACGACTCATGTTCTCTAGCCGTTTACCTCAC 262
|||||||| || || || || ||||| ||||||||||||||||| ||||||||||||||
Sbjct 160 CACCGTCGCTGCTGTATGCTCTGGCCCTGACGACTCATGTTCTCTTGCCGTTTACCTCAC 219
Query 263 TGGTTTCCAACAAGTGGCGATAGGGATGGGGACAATGATAATGATGCCAGTAATTGGGAA 322
|||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 220 TGGTTTTCAACAAGTGGCAATAGGGATGGGGACTATGATAATGATGCCAGTAATTGGGAA 279
Query 323 TCTATCAGACAGATATGGGATTAAAACAATCCTCACACTTCCTATGTGTCTCTCCATTGT 382
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 280 TCTATCAGACAGATATGGGATTAAAACAATCCTCACCCTTCCCATGTGTCTCTCCATTGT 339
Query 383 TCCTCCTGTAATTTTAGGATACAGAAGAGATACAAAATTCTTCTATGTGTATTATATAAG 442
||||||||||||||||||||||||||| |||| ||||||||| ||||||| |||||||||
Sbjct 340 TCCTCCTGTAATTTTAGGATACAGAAGGGATATAAAATTCTTTTATGTGTTTTATATAAG 399
Query 443 CAAGATTCTGA-CTGCTATGGTATGTGAAGGCACCATTGACTGTCTCGCTAATGCATATG 501
||||||||||| || |||||||||||||||||||| ||||||| || ||| |||||||||
Sbjct 400 CAAGATTCTGACCT-CTATGGTATGTGAAGGCACCGTTGACTGCCTAGCTTATGCATATG 458
Query 502 TGGCAGTAAATATTCATGGCAGTACAAGAATTTCAGCTTTTGGTATTTTAGCTGGTATCA 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 459 TGGCAGTAAATATTCATGGCAGTACAAGAATTTCAGCTTTTGGTATTTTAGCTGGTATCA 518
Query 562 AAACAATTGCTGGACTTTTTGGAACATTAGTCGCTCGTTTTCTACCCATAGCTTTGACTT 621
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 519 AAACAATTGCTGGACTTTTTGGAACATTAGTTGCTCGTTTTCTTCCCATAGCTTTGACTT 578
Query 622 TTCAGGTTTCTGCTATATCATTTCTCGTTGGCCTAGTGTACATGAGAGTTTTCCTAACAG 681
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 579 TTCAGGTTTCTGCTATATCATTTTTCGTTGGCCTAGTGTACATGAGAGTTTTCCTAAAAG 638
Query 682 AAAA--T---C--T-AT-ACGATGATGATCATCATCGA-GGTACGTATCATCAAGAGGAT 731
|||| | | | || | |||||||||| ||||| | |||||||||||||||||||||
Sbjct 639 AAAAGCTAAACGATGATGAAGATGATGATCTTCATC-ATGGTACGTATCATCAAGAGGAT 697
Query 732 CATGATAGTATTAATGCCACAATGTTAGCAGAGCCGATTCTGAACGAGACACCCATAAAA 791
||||||||||||||| ||||||||||||||||||||||||||||||| | |||||| |||
Sbjct 698 CATGATAGTATTAATACCACAATGTTAGCAGAGCCGATTCTGAACGATAGACCCATCAAA 757
Query 792 ACACAAGTCTTTCACAAGAAATATTCTTCATTGAAAGATATGATCAGCTTGATGAAGACT 851
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 758 ACACAAGTCTTTCACAAGAAGTATTCTTCATTGAAAGATATGATCAGCTTGATGAAGACT 817
Query 852 AGCACCATATTCTTTCAAGCATTGGTTGTTACATTCTTCAGCAGTTTTTCAGATAGTGGA 911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 818 AGCACCATATTCTTTCAAGCATTGGTTGTTACATTCTTCAGCAGTTTTTCAGATAGTGGA 877
Query 912 ATGGAGTCTGCTTTCTTGTACTTTTTGAAAGCACGTTTTGGATTTGACAAGAAACAGTTT 971
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 878 ATGGAGTCTGCTTTCTTGTACTTTTTGAAAGCACGTTTTGGATTTGACAAGAAGCAGTTT 937
Query 972 GCTGATCTCCTGCTGTTGATTACCATCGTTGGGTCTATCTCTCAATTGTTTGTACTGCCA 1031
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 938 GCTGATCTCTTGCTGTTGATTACCATCGTTGGGTCTATCTCTCAATTGTTTGTACTGCCA 997
Query 1032 AGATTTGCATCTGCCATTGGAGAACGCAAGCTTTTATCAACAGGGCTTTTTATAGAATTC 1091
||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 998 AGATTTGCATCGGCCATTGGAGAATGCAAGCTTTTATCAACAGGGCTTTTTATGGAATTC 1057
Query 1092 ATAAACATGGCCATTGTCAGCATTTCTTGGGCACCATGGGTTCCTTATCTCATCACTCTG 1151
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1058 ATAAACATGGCCATTGTCAGCATTTCTTGGGCACCATGGGTTCCTTATCTCACCACTGTG 1117
Query 1152 TTTGTACCTGGAGCCTTATTTGTGATGCCATCGGTTTGTGGTATTGCCTCAAAACAAGTT 1211
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1118 TTTGTACCTGGAGCCTTATTTGTGATGCCATCGGTTTGTGGTATTGCCTCGAGACAAGTT 1177
Query 1212 GGACCTGGTGAACAGGGAAAAGTGCAAGGATGTATATCTGGAGTGAGGTCCTTTGGCAAA 1271
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1178 GGACCTGGTGAACAGGGAAAAGTTCAAGGATGCATATCTGGAGTGAGGTCCTTTGGCAAA 1237
Query 1272 GTGGTGGCACCATTTGTGTTCAGTCCATTGACAGCATTGTTTCTTTCGGACAATGCACCG 1331
||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||
Sbjct 1238 GTGGTGGCACCATTTGTGTTCAGTCCATTGACAGCGTTGTTTCTTTCAAAAAATGCACCG 1297
Query 1332 TTCTATTTCCCTGGATTCAGCCTTCTTTGCATCTCCTTGTCGTCGTTGATCGGGTTCTTT 1391
||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct 1298 TTCTATTTCCCTGGATTCAGCCTCCTTTGCATCTCCTTGTCCTCGTTGATCGGTTTCTTT 1357
Query 1392 CAGAGTCTACTGATTAAAGATATTCCTACTCCAC-ACTTAAACAAAGCAATCAACAAAAC 1450
||||||||||||||||||||| | |||||||||| | || ||||||||||||||||||||
Sbjct 1358 CAGAGTCTACTGATTAAAGATGTCCCTACTCCACCA-TTGAACAAAGCAATCAACAAAAC 1416
Query 1451 ATCAGGAGAAGAAGTGTGATTATATGAATTCATCATGTATAAATTAAAGAGAAGAGTGTA 1510
||||| || |||||||||||||||||| |||||||||||||| | ||||||||||||
Sbjct 1417 CTCAGGCGAGGAAGTGTGATTATATGAACTCATCATGTATAAA--A--GAGAAGAGTGTA 1472
Query 1511 TATATGGCCTTGTAGCTTGTGAC 1533
||||| ||||| |||||||||||
Sbjct 1473 TATATAGCCTTTTAGCTTGTGAC 1495
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75652221315
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5