BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480584
Length=2417
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17010.1 | Symbols: | Mechanosensitive ion channel family p... 3712 0.0
> AT2G17010.1 | Symbols: | Mechanosensitive ion channel family
protein | chr2:7392850-7395970 REVERSE LENGTH=2404
Length=2404
Score = 3712 bits (2010), Expect = 0.0
Identities = 2290/2423 (95%), Gaps = 27/2423 (1%)
Strand=Plus/Plus
Query 1 ATGGATTTCAGAAATTCCTTCAAATCTCATAGCTCATACAAACAAATTCGAAGCCCTGGT 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 ATGGATTTCAGAAATTCCTTCAAATCTCATAGCTCATACAAACAAATTCGAAGCCCCGGA 60
Query 61 GATCAAAGCGAGCCAAGCCCTGAACATCTTCCTATCCTCCACGATCACGATCACCATCCT 120
||||||||||||||||||||||||||||| || || | | | |||||||||||||||
Sbjct 61 GATCAAAGCGAGCCAAGCCCTGAACATCTGCCAAT--T-CTC---CACGATCACCATCCT 114
Query 121 GATCATTCCAGCATGGTCATCGATGACCCGAAACCCGAAAGCACTCGTTCTAGCCTCGAT 180
||||||||| ||||||| ||||||||| ||||||||| ||||||||||||||||||||
Sbjct 115 GATCATTCCGGCATGGTGGTCGATGACCAGAAACCCGACAGCACTCGTTCTAGCCTCGAC 174
Query 181 GATGGTCGTAACGCACCTGTAGAACGTGATGCCAGTTACAAATTTTGGCAAGA-AA-AC- 237
|||||||||||||| ||||||||||||||||||||||||||||| |||||||| || ||
Sbjct 175 GATGGTCGTAACGCGCCTGTAGAACGTGATGCCAGTTACAAATTCTGGCAAGACAACACT 234
Query 238 ACTGGAACACCCACCGATGACACGGCGGTGAGAACAAGTGATAAAGATCCAATCGCTACT 297
|||||||| | || ||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 235 ACTGGAACGTCAACGGATCACACGGCGGTGAGAACAAGTGATAAAGATCCAATCGCTATT 294
Query 298 ATTCGAAAAGGCGATAGATTAAGCGGTAGTTTCGATTTCGCGCAAGGGAAGCTACCGGTT 357
| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 295 AGTCGAAAAGGCGATAGATTAAGCGGTAGTTTCGATTTCGTGCACGGGAAGCTACCGGTT 354
Query 358 GAGGATTCTCCAACGAAAATGGTTGCCGGAGAACCTATGAATCGACAATGGAGAGGTAGA 417
|| || ||||||||||||||||| || ||||| ||| ||||||| |||||||||||||||
Sbjct 355 GATGAATCTCCAACGAAAATGGTCGCTGGAGAGCCTGTGAATCGGCAATGGAGAGGTAGA 414
Query 418 AATAATGAAGAGATCACACTTGATGTTGATCAAGAAAATGATGATGTAAGTCACCAGACA 477
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 415 AATAATGAAGAGATCACACTTGATGTTGATCAAGAAAATGATGATGTAAGTCACCAAACA 474
Query 478 ATGCCTACGCCTACATCAACGGCTCGAACCTCGTTTGATGCGTCTAGAGAATTGAGAGTC 537
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 475 ATGCCTACGCCTACATCAACGGCTCGAACCTCGTTTGATGCGTCTAGAGAAATGCGAGTC 534
Query 538 TCTTTTAACGTTCGTAGAGCGGGTGGTACGTTTGTTGCTGGTTCGGTTCCTTCTTCGTCT 597
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 535 TCTTTTAACGTTCGTAGAGCGGGTGGTGCGTTTGTCGCTGGTTCGGTTCCTTCTTCGTCT 594
Query 598 TCTCATTCGACTACTTCTTCGTCCGCTACAATGCGGACGAATCAGGAGCAGCCGCAACAG 657
|| |||||| || ||||||||||||| |||||||||||||||||||| |||||||||| |
Sbjct 595 TCCCATTCGTCTTCTTCTTCGTCCGCGACAATGCGGACGAATCAGGATCAGCCGCAACTG 654
Query 658 CAGGAGGATGAGGTTGTTAGATGTACTTCGAACATGTCGTTTCAGAGGAAATCAGAGCTT 717
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 CAGGAGGAAGAGGTTGTGAGATGTACTTCGAACATGTCGTTTCAGAGGAAATCAGAGCTT 714
Query 718 ATTTCGAGAGTTAAGACAAGGTCTAGGCTTCAAGATCCGCCACGAGAGGAGGAAACGCCT 777
|| || ||||| |||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 715 ATATCTAGAGTGAAGACAAGGTCTAGGCTTCAAGATCCGCCACGTGAGGAAGAAACGCCT 774
Query 778 TACTCGGGTTGGAGATCGGGTCAGTTGAAATCCGGGTTACTTG-GTGATATTGATGAAGA 836
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 775 TACTCGGGTTGGAGATCGGGTCAGTTGAAATCCGGGTTACTTGCG-GATATTGATGAAGA 833
Query 837 GGATGATCCATTAGCGGAAGAAGATGTACCAGATGAGTATAAAAGAGGGAAGCTTGACGC 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 GGATGATCCATTAGCGGAAGAAGATGTACCAGATGAGTATAAAAGAGGGAAGCTTGACGC 893
Query 897 CATTACATTGCTCCAGTGGCTTAGCTTAATCGCTATTATAGCTGCATTGGCGTGTAGTTT 956
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 894 CATTACATTGCTCCAGTGGCTTAGCTTAGTCGCTATTATAGCTGCATTAGCGTGTAGTTT 953
Query 957 ATCGATTCAGTCTTGGAAGAAAGTTAGAGTTTGGAACCTTCACT-TATGGAAATGGGAAG 1015
||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||
Sbjct 954 GTCGATTCAGTCTTGGAAGAAAGTTAGAGTTTGGAATCTTCA-TCTATGGAAATGGGAAG 1012
Query 1016 TGTTTTTGCTGGTTCTTATATGTGGGAGGTTGGTTTCGGGTTGGGGAATCCGAATTGTTG 1075
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1013 TGTTCTTGTTGGTTCTTATATGTGGGAGGTTGGTTTCGGGTTGGGGAATCCGAATCGTTG 1072
Query 1076 TCTTCTTCATCGAGAGAAACTTCCTTTTGCGAAAACGTGTTCTTTACTTCGTATACGGTG 1135
||||||||||||||||||||||||||||||| || || |||||||||||||| |||||||
Sbjct 1073 TCTTCTTCATCGAGAGAAACTTCCTTTTGCGGAAGCGGGTTCTTTACTTCGTTTACGGTG 1132
Query 1136 TGCGTAGAGCTGTTCAGAATTGCCTCTGGCTCGGCCTAGTTCTTCTCGCTTGGCATTTCT 1195
||||||||||||||||||| || || ||||| |||||||| |||||||||||||| ||||
Sbjct 1133 TGCGTAGAGCTGTTCAGAACTGTCTATGGCTAGGCCTAGTCCTTCTCGCTTGGCACTTCT 1192
Query 1196 TGTTCGATAAGAAAGTACAAAGAGAGACAAGGAGCAGGATGAATCATAAGAACATCTCAG 1255
||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||| |
Sbjct 1193 TGTTCGACAAGAAAGTACAGAGGGAGACAAGGAGCAGGATGAATCATAAGAACATCTCTG 1252
Query 1256 CTTGGAACATGAAAAGGCTAATGAAGATTGTGAGAAATGTTTCCCTCACCACATTGGACG 1315
||||||||||||| || |||||||||||||||||||||||||| || |||||| ||||||
Sbjct 1253 CTTGGAACATGAAGAGACTAATGAAGATTGTGAGAAATGTTTCTCTGACCACACTGGACG 1312
Query 1316 AACAGATGCTGGAAAGCACATACGAAGATGAATCCACCCGCCAGATACGAAGCGAAAAAG 1375
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1313 AACAGATGCTAGAAAGCACATACGAAGATGAATCCACCCGCCAGATACGAAGCGAAAAAG 1372
Query 1376 AAGCAAAAGCAGCGGCAAGGAAGATTTTCAAGAACGTTGAGCAACGTGGCGCAAAGTACA 1435
| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 AGGCTAAAGCAGCTGCAAGGAAGATTTTCAAGAACGTTGAGCAACGTGGCGCAAAGTACA 1432
Query 1436 TTTACCTAGAGGATTTGATGAGATTTTTGCGGGAAGACGAGGCGATGAAGACCATGGGCC 1495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1433 TTTACCTAGAGGATTTGATGAGATTTTTGCGGGAAGACGAGGCGATGAAGACCATGGGCC 1492
Query 1496 TCTTCGAAGGTGCACCGGAGACCAAAAGGATTAGCAAATCAGCCTTAAAGAACTGGCTGG 1555
||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1493 TCTTCGAAGGTGCACCGGAGAATAAAAGGATCAGCAAATCAGCCTTAAAGAACTGGCTGG 1552
Query 1556 TCAATGCTTTCAGAGAGCGACGAGCTCTTGCCCTGACACTCAACGACACCAAGACAGCGG 1615
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1553 TCAATGCTTTCAGAGAGCGACGAGCTCTTGCCCTGACACTCAACGACACCAAGACAGCAG 1612
Query 1616 TGAACAAGCTCCATCACATGATTAATATTGTCACTGCCATTGTCATTGTTGTCATATGGC 1675
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1613 TGAACAAGCTCCATCACATGATTAATATTGTCACTGCCATAGTCATTGTTGTCATTTGGC 1672
Query 1676 TTGTCCTTCTTGAAATTGCTTCCTCCAAGGTACTTCTATTTGTAAGTTCACAAGTTGTAC 1735
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1673 TTGTCCTTCTTGAAATTGCTTCCTCCAAGGTACTTCTCTTTGTAAGTTCACAAGTTGTAC 1732
Query 1736 TCTTGGCCTTCATCTTTGGGAACACTGTCAAGACCGTCTTTGAGTCCATCATCTTCTTAT 1795
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1733 TCTTGGCCTTCATCTTTGGGAACACTGTCAAGACCGTCTTCGAGTCCATCATCTTCTTAT 1792
Query 1796 TCATTGTACACCCTTACGATGTTGGTGATCGCTGTGAGATTGACAGTGTACAGTTGGTGG 1855
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1793 TCATCGTACACCCTTACGATGTTGGTGATCGGTGTGAGATTGACAGTGTACAGTTGGTGG 1852
Query 1856 TGGAGGAGATGAACATACTCACTACGGTGTTCTTGA-GATACGACAATCTAAAGATTATG 1914
||||||||||||||||||||||||| |||||||| | ||||||||||||| |||||||||
Sbjct 1853 TGGAGGAGATGAACATACTCACTACCGTGTTCTT-ACGATACGACAATCTGAAGATTATG 1911
Query 1915 TATCCGAATAGTCTTTTGTGGCAAAAATCAATCAACAATTACTACCGCAGTCCGGACATG 1974
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1912 TATCCGAATAGTCTTTTGTGGCAGAAATCAATCAACAATTACTACCGCAGTCCGGATATG 1971
Query 1975 GGAGATGCAATCGAGTTCTGTGTCCACATTACTACTCCTCTTGAAAAGATCGCCGTGATC 2034
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1972 GGAGATGCAATCGAGTTCTGTGTCCACATTACTACTCCTCTTGAAAAAATCTCCGTGATC 2031
Query 2035 AAACAGAGAATATCAAACTACATCGACAACAAGCCAGAGTATTGGTACCCACAAGCCAAA 2094
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2032 AAACAGAGAATATCGAACTACATCGACAACAAGCCGGAGTATTGGTACCCACAAGCCAAA 2091
Query 2095 ATCATTGTAAAAGATTTGGAAGATTTGCACATAGTAAGACTAGCAATATGGCCATGTCAC 2154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2092 ATCATTGTAAAAGATTTGGAAGATTTGCACATAGTAAGACTAGCAATATGGCCATGTCAC 2151
Query 2155 AGGATTAATCACCAAGATATGGCTGAAAGATGGACAAGAAGAGCCGTCTTAGTCGAAGAA 2214
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2152 AGGATTAATCACCAAGACATGGCTGAAAGATGGACAAGAAGAGCCGTCTTAGTCGAAGAA 2211
Query 2215 GTGATTAAGATCCTCCTTGAACTCGACATTCAACACCGGTTTTATCCACTCGATATCAAT 2274
||||||||||| ||||| || |||||||||||||||||||||||||| ||||||||||||
Sbjct 2212 GTGATTAAGATACTCCTCGAGCTCGACATTCAACACCGGTTTTATCCGCTCGATATCAAT 2271
Query 2275 GTACGAACAATGCCTACCGTTGTCTCTAGCAGAGTCCCACCTGGCTGGTCACAAAACCAA 2334
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2272 GTCCGAACAATGCCTACCGTTGTCTCTAGCAGAGTTCCACCTGGCTGGTCACAAAACCAA 2331
Query 2335 CCTGCCTGAAATTTTGATGAACAACCCAACAGAGGTTGATGTTTATTTCTTTTTGCCTCA 2394
||||||||||||||||||||||||| ||||| || | | |||| | ||||||
Sbjct 2332 CCTGCCTGAAATTTTGATGAACAACACAACAC---TT--T-TC-ATTT-T----GCCTCA 2379
Query 2395 AACGAGTCAACAATTTTGTAACC 2417
|| ||||||||||||||||||||
Sbjct 2380 AAGGAGTCAACAATTTTGTAACC 2402
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 120029503095
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5