BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480585
Length=2233
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17020.1 | Symbols: | F-box/RNI-like superfamily protein | ... 3498 0.0
> AT2G17020.1 | Symbols: | F-box/RNI-like superfamily protein
| chr2:7396337-7398838 REVERSE LENGTH=2244
Length=2244
Score = 3498 bits (1894), Expect = 0.0
Identities = 2129/2243 (95%), Gaps = 13/2243 (1%)
Strand=Plus/Plus
Query 1 GATCGCCACAATTTCCGCAATTTACTTGATCAGGAAAGAGAGACTCCGACGATGG-T--G 57
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1 GATCGCCACAATTTCCGCAATTTACTTGATCAGGAAAGAGAGACTCCGTTGATGGCTACC 60
Query 58 ACCACCGTCTTATGTGGCGGAGGAGGAGATGTTAACGGTTGCGATGGAGATAGAAGCCTG 117
||||||||| |||| |||||||||||||||||| | ||||||||||| || |||||||||
Sbjct 61 ACCACCGTCGTATGCGGCGGAGGAGGAGATGTTGAGGGTTGCGATGGCGAGAGAAGCCTG 120
Query 118 GATCTGTTACCGGCGGCTCTCTTGGAGACTATAATGACGAAACTCGACGTAGCGTCTCTC 177
|||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||
Sbjct 121 GATCTGTTACCGGCGGCTCTCTTGGAGACTATTATGACGAAACTCGATGTTGCGTCTCTC 180
Query 178 TGCTCGTTGGCTTCTACTTGCAAAACACTTAAGAGCTGTGTTACTCGTGTCCTCACCTTC 237
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 181 TGCTCGTTGGCTTCTACTTGCAAAACACTTAAGAGCTGTGTCACTCGTGTTCTCACCTTC 240
Query 238 ACTCCCAACTTCCACATCTTCAATGTTTCATTGTCAATGGAAACTGTTAGACCATTGTTG 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ACTCCCAACTTCCACATCTTCAATGTTTCATTGTCAATGGAAACTGTTAGACCATTGTTG 300
Query 298 TTTCCGAATCAACAACTCTCAAGTCTCAAGCTTGATTGTGGAAGACTTGGTAATTCAGCT 357
||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||
Sbjct 301 TTTCCGAATCAACAACTTTCTAGTCTCAAGCTTGATTGTGGAAGGCTTGGTAATTCAGCT 360
Query 358 ATTGATATATTGGTACGTCCTTCTCTGAGGGAGATTTCTCTTCACAATTGTCGGGATTTC 417
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 361 ATTGATATATTGGTACGTCCTTCTTTGAGGGAGATTTCTCTTCACAATTGTCGGGATTTC 420
Query 418 AGCGGCGATCTAATCTCTGAAATCGGGAGGAGATGCAAGGATTTGAGGCTCCTATGTTTG 477
||||| ||||| ||||| ||||| || |||| ||||||||||||||||||||||||||||
Sbjct 421 AGCGGAGATCTCATCTCCGAAATTGGTAGGAAATGCAAGGATTTGAGGCTCCTATGTTTG 480
Query 478 GGTTCAGTGGCGGAGAAAGTTGGTCGAAGTATTAGCCGTTGTGCTTTCGAAGATTTACTA 537
|||||||| || ||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 481 GGTTCAGTAGCAGAGAAAGTTGGTCGAAGTATTAGCCGTTGTGCTTTGGAGGATTTACTT 540
Query 538 AACGGTTGCTCCCATTTAGAGGTCTTAGCACTCATGTTTGACCTCTCATTGTATCTGCGT 597
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AATGGTTGCTCCCATTTAGAGGTCTTAGCACTCATGTTTGACCTCTCATTGTATCTGCGT 600
Query 598 CCTGGTGATGGTCGCATTTTTGGATTGGTATCTGATAAATTGACTCATCTGGAGCTAGGA 657
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 601 CCTGGTGATGGTCGCATTTTTGGATTGGTATCTGATAGATTGACTCATCTGGAGCTAGGA 660
Query 658 CACATCTCGTCAAGGATGATGACTCAACTACTTACATCAACTGAAATCTCGGGGCAAGAC 717
|||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 661 CACATCACGTCAAGGATGATGACTCAGCTACTCACATCAACTGAAATCTCGGGGCAAGAC 720
Query 718 AGCAGCCGGGTTAC-A--TCTACTGTGCTACAAAATGTCCAGCAGTTGCGCCTCTCAGTG 774
|||| ||| ||||| | ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 721 AGCAACCGAGTTACTACATCTACTGTGCTACAAAATGTCCAGCGGTTGCGCCTCTCAGTG 780
Query 775 GATTGTATTACTGATGCTGTGGTTAAGGCGATATCGAAATCTCTTACGTCGTTGATAGAT 834
||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||
Sbjct 781 GATTGTATTACTGATGCTGTGGTTAAGGCGATATCGAAATCTCTTCCATCTTTGATAGAT 840
Query 835 TTGGACATAAGAGACGCGCCTCTTGAGGATCCAAGGCAACTATCAGACCTCACGGATTTT 894
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 841 TTGGACATAAGAGACGCGCCTCTTGAGGATCCAAGACAAGTATCAGACCTCACGGATTTT 900
Query 895 GGGCTTCATGAGATCAATCAAAACGGTAGGCTGAAGCACCTCTCTCTAATCCGTAGTCAG 954
|||||||||||||||||||| || |||| |||||||||||| |||||||||||||| |||
Sbjct 901 GGGCTTCATGAGATCAATCAGAATGGTAAGCTGAAGCACCTGTCTCTAATCCGTAGCCAG 960
Query 955 GAGTTTCACCCTACTTACTTCCGGCGAGTTAGTGATCAAGGAATGCTTTTTCTTGCTGAC 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GAGTTTCACCCTACTTACTTCCGGCGAGTTAGTGATCAAGGAATGCTTTTTCTTGCTGAC 1020
Query 1015 AAATGCTTGGGCATGGAAAGCATTTGTCTTGGTGGCTTTTGTCGGGTAACAGATGCTGGT 1074
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 AAATGCTTGGGAATGGAAACCATTTGTCTTGGTGGCTTTTGTCGGGTAACAGATGCTGGT 1080
Query 1075 TTCAAGACTATTCTTCACTCTTGCGCTAGTCTCTCCAAGTTTAGCATATATCATGGACCT 1134
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1081 TTCAAGACTATTCTTCACTCTTGCGCTAGCCTCTCCAAGTTTAGTATATATCATGGACCT 1140
Query 1135 AAATTGACGGATCTTGTCTTCCATGACATCTTAGCAACTACT-TTATCGCTTAGTCATGT 1193
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1141 AAATTGACGGATCTTGTCTTCCATGACATCTTAGCAACTACTCTT-TCGCTTAGTCATGT 1199
Query 1194 TTGCTTAAGAAGGTGCCATCTTCTTACGGACCACGCAATTCAAAAGCTGGCGTCAAGTCT 1253
| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1200 TAGCTTAAGAAGGTGCCATCTTCTTACTGACCACGCAATTCAAAAGCTGGCATCAAGTCT 1259
Query 1254 CAAGCTGGAGAATCTTGACCTCAGAGGGTGCAGAAACCTGAGGGATGGAACCTTAAAAGC 1313
||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||
Sbjct 1260 CAAGCTGGAGAATCTTGACCTCAGAGGGTGCAGAAACCTGAGGGATGAAACCTTGACAGC 1319
Query 1314 TGTGTCTCATCTGCCAAAACTGAAGGTTTTACTTCTTGATGGCACCGATATTAGCGACAC 1373
||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 1320 TGTATCTCATCTGCCAAAACTGAAGGTTTTACTTCTTGATGGCGCTGATATTAGCGACAC 1379
Query 1374 AGGGCTTTCTTACCTAAAAGAGGGAGTTTTGGACTCCCTAGTTTCTTTATCTGTCAGAGG 1433
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 AGGGCTTTCGTACCTAAAAGAGGGAGTTTTGGACTCCCTAGTTTCTTTATCTGTCAGAGG 1439
Query 1434 GTGCAGAAATTTAACAGATAAGTTCATGTCTACCTTATTTGACGGATCCTCAAAACTGGT 1493
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 GTGCAGAAATTTAACCGATAAGTTCATGTCTACCTTATTTGACGGATCCTCAAAACTGGC 1499
Query 1494 GCTGCGTGAACTCGACTTGTCTAATCTTCCTAATTTAACGGATGCTGCCATTTTTGCTCT 1553
| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1500 GTTGCGGGAACTCGACTTGTCTAATCTTCCTAATCTAACGGATGCTGCCATTTTTGCTCT 1559
Query 1554 AGCAAAATCTGGAGCCCCAATCACAAAACTGCAACTAAGAGAGTGTAGACTCATAGGGGA 1613
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1560 AGCAAAATCTGGAGCCCCAATCACAAAACTGCAACTAAGAGAATGTAGACTCATAGGTGA 1619
Query 1614 TGCCTCAGTCATGGCTCTTGCATCTACACGGGTTTATGAAGACGAATGTCCTGGAAGTAG 1673
|||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||
Sbjct 1620 TGCCTCAGTCATGGCTCTTGCATCCACCCGGGTTTACGAAGACGAATGTCCTGGAAGTAG 1679
Query 1674 CTTGTGTTTGTTGGATCTTTACGACTGTGGAGGCATCACACAACTCTCATTCAAATGGCT 1733
| |||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1680 CCTGTGCTTGTTGGATCTTTACGACTGTGGTGGCATCACGCAACTCTCATTCAAATGGCT 1739
Query 1734 AAAGAAACCATTTTTCCCGAGGCTTAAATGGTTAGGAATCACAGGAAGTGTAAACAGAGA 1793
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1740 AAAGAAACCGTTTTTCCCGAGGCTTAAATGGTTAGGGATCACAGGAAGTGTAAACAGAGA 1799
Query 1794 TATCGTAGATGCTTTGGCAAGGAGACGACCACATTTACAGGTCTCATGCCGTGGAGAAGA 1853
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1800 TATCGTAGATGCTTTGGCAAGGAGACGACCACATTTGCAGGTCTCTTGCCGTGGAGAAGA 1859
Query 1854 GCTGGGGAATGATGGGGAAGACGACTGGGACTCTGCAGACATACACCAACACATAGAAGC 1913
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1860 GCTTGGAAATGATGGGGAAGACGACTGGGACTCTGCAGACATACACCAACACATAGAAGC 1919
Query 1914 ACAAGAAGATGAGCTTGAACAGTGGATTCTTGGAGATGAAGGTGATGTTGAAATGGAGGA 1973
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1920 ACAAGAAGATGAGCTTGAACAGTGGATTCTTGGAGACGAAGGTGATGTTGAAATGGAGGA 1979
Query 1974 CGCAGAAGATGAGAGTGAAGAAGACGCAAGTGAAGAAGACTGATAAATCTGAAACTATAT 2033
|||||||| |||||||||||||||||||||||||||||||||||| |||||| |||| |
Sbjct 1980 TGCAGAAGACGAGAGTGAAGAAGACGCAAGTGAAGAAGACTGATAATTCTGAAGCTATTT 2039
Query 2034 GGGTAAACACCAATTCTCTTAATCtttactttaggttttaattttttttatgttctcttt 2093
||||||| |||||||||| | |||||||||| ||||||||||| |||| ||||||| |||
Sbjct 2040 GGGTAAATACCAATTCTCGTCATCTTTACTTGAGGTTTTAATTCTTTTGATGTTCT-TTT 2098
Query 2094 tttttttCTTAGCTCttgtggttattgttgttg---gtgttattgttgttgttgttggtg 2150
||| |||||||| |||| |||||||||||||| ||||| | ||||||||||||||||
Sbjct 2099 TTTCTTTCTTAGTTCTTATGGTTATTGTTGTTATTAGTGTTGT-GTTGTTGTTGTTGGTG 2157
Query 2151 atgttgttgttCTAATCATCTCATGTTTCTTTAACTTTGGTCTTGATTATTTGAATAAAG 2210
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 2158 ATGTTGTTGTTCTAATCATCTCTTGTTTCTTTAACTCTGGTCTTGATTATTTGAATAAAG 2217
Query 2211 GATATCTAGAGATTGTGATGTGT 2233
||||||||||||||||| |||||
Sbjct 2218 GATATCTAGAGATTGTGTTGTGT 2240
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110792602815
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5