BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480586
Length=1424
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17030.1 | Symbols: | F-box family protein with a domain of... 1886 0.0
AT2G17036.1 | Symbols: | F-box family protein with a domain of... 494 1e-138
> AT2G17030.1 | Symbols: | F-box family protein with a domain
of unknown function (DUF295) | chr2:7399103-7400932 FORWARD
LENGTH=1511
Length=1511
Score = 1886 bits (1021), Expect = 0.0
Identities = 1166/1236 (94%), Gaps = 9/1236 (1%)
Strand=Plus/Plus
Query 1 CAATGGTGGATTGGTCTACACTCCCGAAGGATCTCTTAGACCTAATCTCAAAATCTCTAG 60
|||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||
Sbjct 4 CAATGGTGGATTGGTCTACACTACCGAAGGATCTTTTAGACCTAATTTCAAAATCTCTAG 63
Query 61 AATCTTCCTTCGATCTCGTCCAATTCCGTTCCGTTTGTTCTTCATGGCGATCCGCCGCCG 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 64 AATCTTCCTTCGATCTCATCCAATTCCGTTCCGTTTGTTCTTCATGGCGATCCGCCGCCG 123
Query 121 AGCC-AAAACGTCCGCTCCCAACACATCACCTCCCGATCCTCCCCGATAACGGTGGTAGC 179
|||| |||| |||| || ||||||||||| ||||||||||||||||||||||| || ||
Sbjct 124 AGCCGAAAA-GTCCTCTTCCAACACATCATCTCCCGATCCTCCCCGATAACGGGGGGAGT 182
Query 180 CTCTTCCCTGATTCCGCCGTAGGTTTCCGTCTCTCGCAGCGGAGTATCTTACTTATCAAG 239
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 183 CTCTTCCCTGATTCCGCCGTTGGTTTCCGTCTCTCGCAGCGGAGTATCTTACTTATCAAG 242
Query 240 CCTCATGAACCACCACACAGCGAAGCAGATCCGTTTAGATGGTTGATCAAAGTCGAGGAA 299
||||||| | ||| | |||| | ||| ||||| |||||||||||||||||||||||
Sbjct 243 CCTCATG-A--ACCGTGTATCGAATCGGATTCGTTTGGATGGTTGATCAAAGTCGAGGAA 299
Query 300 GATCTTAATGTTCCTCGTAAGGTGACTCTTTTAGACCCGTTATGTGATAAAAGAAACTCA 359
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 300 GATCTTAATGTTCCTCGTAAGGTGACTCTTTTAGATCCGTTATGTGATACAAGAAACTCA 359
Query 360 ATTCCTGAGAATTTCCCTCATGTTCTCGATATGTCGAAGTTTAAGGTTCGAGAATTGGGT 419
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 360 ATTCCTGAGAATTTCCCTCGTGTTCTCGATATGTCCAAGTTTAAGGTTCGAGAATTGGGT 419
Query 420 CGAGAGTTTAAGCTTCATTATTTCAATACTGTTGGAGATATTGTAGAGAGTTTATACTTG 479
|| || || |||||||||||||||||||||||||| ||||||||||||||||| || |||
Sbjct 420 CGTGAATTCAAGCTTCATTATTTCAATACTGTTGGTGATATTGTAGAGAGTTTGTATTTG 479
Query 480 GAGAAAGCTGTTGTTAAGTATCTAGATTGTGATGTTGAGTATAAATTTGTGTTGCTTACG 539
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 480 GAGAAAGCTGTTGTTAAGTATCTAGATTGTGATGGAGATTATAAATTTGTGTTGCTTACG 539
Query 540 ATTCATGTTTCGGGGAAGTTAGCTGTGTTTAGGTCTTGGGATCGAGCATGGACTGTGATT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 ATTCATGTTTCGGGGAAGTTAGCTGTGTTTAGGTCTTGGGATCGAGCATGGACTGTGATT 599
Query 600 AATGATATGCCTTCTCCTTATGATGATGTGATTTTGTTCGATGGACGTTTCTTTGCGGTT 659
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 600 AATGACATGCCTTCTCCTTATGATGATGTGATGTTGTTCGATGGACGTTTCTTTGCGGTT 659
Query 660 GATAACAACGGGAGGACTGTGGTTGTTGATTACAGTTCTTTGAAGTTGACGTTGGTCGCG 719
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||
Sbjct 660 GATAACAACGGGAGGACTGTGGTTGTGGATTACAGTTCCTTGAAGTTGACGTTGGTTGCG 719
Query 720 AGTCCTGTGTTTGGTGGTGATAAGAAGTTTTTGATTGAATCTTGTGGTGAAATGTTGCTT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AGTCCTGTGTTTGGTGGTGATAAGAAGTTTTTGATTGAATCTTGTGGTGAAATGTTGCTT 779
Query 780 GTTGATATGTATTTGAGTTTAGAGGCAGTGGAAGGGGATCCTGGATTCGTCGAGGAGATT 839
||||||||||| ||||| ||||||||||||||||||||||||||||| || |||||||||
Sbjct 780 GTTGATATGTACTTGAGCTTAGAGGCAGTGGAAGGGGATCCTGGATTTGTTGAGGAGATT 839
Query 840 TTCGAGCATCCTGCGTTTTATATGAATGAGAGAACGGTTAAATTTAAAGTGTATAGATTT 899
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 840 TTCGAGCATCCTGCGTTTTATATGAATGAGAGAACAGTCAAATTTAAAGTGTATAGATTT 899
Query 900 GTGGAAAGAGAGGAGAGTTGGGTTGATGTTTACGATCTTGAGGATAAGATGTTGTTCCTT 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GTGGAAAGAGAGGAGAGTTGGGTTGATGTTTACGATCTTGAGGATAAGATGTTGTTCCTT 959
Query 960 GGTGATGATTCCACCTTTTCCGCCTCAGCTTCTGATATATTACCTACC-TGTGATGGAAG 1018
|||||||||||||||||||| || |||||||| |||||||||||| | |||||||||||
Sbjct 960 GGTGATGATTCCACCTTTTCTGCTTCAGCTTCCGATATATTACCT-CTATGTGATGGAAG 1018
Query 1019 CTCCGTGTTCTTCAATGGTAATGTCTTCAATGGGGAAGACTTGGGCGCAATGCAAGATCG 1078
||| ||||||||||| ||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1019 CTCTGTGTTCTTCAACGGTAATGTCTTCAATGGGGAAGACTTGGGTGCGATGCAAGATCG 1078
Query 1079 AGATTTGGGAGTGTTTGATTTCAGGACTGGCAAAATAGAGCTGGTGCAAAAACTCCCTGA 1138
|||||||||||||||||| ||||||| ||| ||||||||||| |||||||||||||||||
Sbjct 1079 AGATTTGGGAGTGTTTGACTTCAGGAGTGGGAAAATAGAGCTAGTGCAAAAACTCCCTGA 1138
Query 1139 ATATGCTAAGCTGTTTTGGCCTCCACCTCCCTGGATTACTTCTCGTGCGTAGATGCTGAA 1198
|||||||||||||||||||||||||||||| ||||| ||||||| |||| | |||||||
Sbjct 1139 ATATGCTAAGCTGTTTTGGCCTCCACCTCCTTGGATAACTTCTCATGCGC-G-TGCTGAA 1196
Query 1199 GATCATACTGGAGAAACATCATCCCAATCTTGAAAA 1234
||||||| ||||||||||||||||||||||||||||
Sbjct 1197 GATCATATTGGAGAAACATCATCCCAATCTTGAAAA 1232
> AT2G17036.1 | Symbols: | F-box family protein with a domain
of unknown function (DUF295) | chr2:7403856-7405219 FORWARD
LENGTH=1287
Length=1287
Score = 494 bits (267), Expect = 1e-138
Identities = 924/1222 (76%), Gaps = 121/1222 (10%)
Strand=Plus/Plus
Query 7 TGGATTGGTCTACACTCCCGAAGGATCTCTTAGACCTAATCTCAAAATCTCTAGAATCTT 66
|||||||| | ||||| || ||||||||||||||||| ||||| |||| |||||||||||
Sbjct 2 TGGATTGGGCAACACTGCCAAAGGATCTCTTAGACCTGATCTCCAAATGTCTAGAATCTT 61
Query 67 CCTTCGATCTCGTCCAATTCCGTTCCGTTTGTTCTTCATGGCGATCCGCCGCCGAGCCAA 126
|||| |||||| | || |||||||| || ||||||||||||||||| ||||| | |||||
Sbjct 62 CCTTTGATCTCATACAGTTCCGTTCTGTATGTTCTTCATGGCGATCTGCCGCGGGGCCAA 121
Query 127 AACGTCC-GCTCCCAACACATCACCTCCCGATCCTCCCCGATAAC-GGTG-GTAGCCTCT 183
| || || ||| ||||| |||||||| || ||||| | | | || | || ||
Sbjct 122 AGCG-CCTTCTCTGGGCACATAACCTCCCGTTCTTCCCC--T--CTGATGACAAACC-CT 175
Query 184 TCCCTGATTCCGCCGTAGGT-TTCCGTC-TCTCGCAGCGGAGTATCTTACTTATCAAGCC 241
| || ||| ||| | |||| | || |||| | |||||| ||||||||||||||
Sbjct 176 T-TCT--CTCCAATGTA-ATCCTCCG-CGTCGCGCACCAGAGTATTTTACTTATCAAGCC 230
Query 242 TCATGAACCACCACACAGCGAAGCAGATCCGTTTAGATGG-TTGATCAAAG-TCGAGGAA 299
| ||||||| || | |||| || |||| |||| ||||| ||| |||| | | | || |
Sbjct 231 TAATGAACC-GCA-A-TGCGAGGCGGATCTGTTTGGATGGATTG-TCAAGGTTTG-GG-A 284
Query 300 GATCTTA-ATGT-TCCTCGTAAGGTGACTCTT-TTAGACCCGTT-ATGTGATAAAAGAAA 355
| | || |||| | |||||||| |||| ||| | | | ||||| | || | ||||||
Sbjct 285 TAACATATATGTAT-CTCGTAAGATGACCCTTCTCA-AACCGTTGA-GTTCTTCAAGAAA 341
Query 356 CTCA-ATTCCTGAGAATTTCCCTCATGTTCTCGATATGTCGAAGTTTAAGGTTCGAGAAT 414
|| | ||||| || |||| |||| | || |||||||||| ||||||| |||||| ||||
Sbjct 342 CT-ACTTTCCTCAGCATTTACCTCGTATTTTCGATATGTCTAAGTTTACGGTTCGTGAAT 400
Query 415 TGGGTCGAG-AGTTTAAG--CT-TCAT--T-ATTTCAATAC--TGT---TGGAGATATTG 462
|| |||| | || | ||| || |||| | | || | ||| ||| |||| | | |
Sbjct 401 TGTGTCGGGAAG-TCAAGCTCTATCATCCTGA-TT-ACTACTGTGTCCCTGGACACACAG 457
Query 463 -TAGAGAGTTTATACTTGGAGAAAGCTGTTGTTAAGTATCTAGATTGTGATGTTGAGTAT 521
| |||| || | |||| |||| ||||||| ||||| ||| | ||| | | |
Sbjct 458 CTTTAGAG-TTGGAGTTGGGGAAAACTGTTGTCAAGTACCTA-A-----ATGAT--G-AC 507
Query 522 AAATTTGTGTTGCTTACGATTCATGTTTCGGGGAAGTTAGCTGTGTTTAGGTCTTGGGAT 581
||||| ||||||||||| |||| || | || |||||||||||||||||||||||||||
Sbjct 508 AAATTCGTGTTGCTTACAATTCTTGAATATGGAAAGTTAGCTGTGTTTAGGTCTTGGGAT 567
Query 582 CGAGCATGGACTGTGATTAATGA-T--ATGCCTTCTCCTTATGATGATGTGATTTTGTTC 638
|||| |||||||||||| ||||| | || ||||||| || | | ||| ||||| |||||
Sbjct 568 CGAGAATGGACTGTGATCAATGATTACATACCTTCTCGTTGTCAAGATTTGATTATGTTC 627
Query 639 GATGGACGTTTCTTTGCGGTTGA-TAACAACGGGAGGACTGTGGTTGTTGATTACAGTTC 697
||||||||||||||||| | || | |||| ||||||||||| |||||||| ||| |||
Sbjct 628 GATGGACGTTTCTTTGCTATCGACT-ACAATGGGAGGACTGTAGTTGTTGACTACTCTTC 686
Query 698 TTTGAAGTTGACGTTGGTCGCGAGTCCTGTG-TT--TGGTGGTGATAAGAAGTTTTTGAT 754
||| || ||||| |||| ||| | |||| || || || ||||| ||||||||| ||||
Sbjct 687 TTTCAAATTGACATTGGCCGCTAATCCTTTGATTGGCGGCGGTGACAAGAAGTTTCTGAT 746
Query 755 TGAATCTTGTGGTGAAATGTTGCTTGTTGATATGTATTTGAGTTTAGAG-GCAGTGGAAG 813
||||||||||||||||||||| || || ||||| | |||||| | | | || ||
Sbjct 747 TGAATCTTGTGGTGAAATGTTTCTGGTGGATAT--A---GAGTTTTGCCTGAA-TGAAAA 800
Query 814 GGGATCCTGGA-TTCGTCGAGGAGATTTTCGAGCATCCTGCGTTTTATATGAATGAGAGA 872
| || ||| ||| | ||| | ||| | | | | ||| || | | |||||||
Sbjct 801 ---A-CC-GGAATTCA-C-AGGGGGTTT-CTA---T--T-CGTATT-T-T-AATGAGACC 843
Query 873 ACGGT---T-A-AA-TTTAAAGTGTATAGATTTGTGGAAAGAGAGGAGAGTTGGGTTGAT 926
||||| | | || |||||| | | || ||| |||||||||||| |||| ||||||||
Sbjct 844 ACGGTCAGTTACAAATTTAAATTCTTTAAATTAGTGGAAAGAGAGAAGAGATGGGTTGAG 903
Query 927 GTTTACGATCTTGAGGATAAGATGTTGTTCCTTGGTGATGATTCCACCTTTTCCGCCTCA 986
||| | ||||||| |||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct 904 GTTGAGGATCTTGGGGATAAGATGTTTTTCCTTGGTGATGACTCCACCTTTTCCGCTTCA 963
Query 987 GCTTCTGATAT-ATTACCTAC-CTG--TG--A--TGGAAGCTCCGTGTTCTTCAATGGTA 1038
|| ||||||| || |||| | ||| || | |||||||| |||||||||| | |
Sbjct 964 ACTGCTGATATTAT-ACCT-CGCTGCGTGGGAACTGGAAGCTTCGTGTTCTTCTAC---A 1018
Query 1039 ATGTCTTCAATGGGGAAGACTTGG-GCGCAATGCAAGATCGAGATTTGGGAGTGTTTGAT 1097
| | | || |||| ||||| | | ||| | |||||| | |||||||||||||||
Sbjct 1019 C-G-C---A-TGAGGAATCCTTGGTG-GTGATGGATGATCGAAACTTGGGAGTGTTTGAT 1071
Query 1098 TTCAGGACTGGCAAAATAGAGCTGGTGCAA-AAACTCCCTGAATATGCTAAGCTGTTTTG 1156
||||||| ||| |||| ||||||||| || ||||||||||||||||| ||| |||||||
Sbjct 1072 TTCAGGAGTGGGAAAACAGAGCTGGTA-AACAAACTCCCTGAATATGCCAAGTTGTTTTG 1130
Query 1157 GCCTCCACCTCCCTGGATTACT 1178
|||||||||||| |||||||||
Sbjct 1131 GCCTCCACCTCCATGGATTACT 1152
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70180361910
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5