BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480587
Length=1968
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17033.2 | Symbols: | pentatricopeptide (PPR) repeat-contai... 2793 0.0
> AT2G17033.2 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:7401193-7403646 FORWARD LENGTH=1969
Length=1969
Score = 2793 bits (1512), Expect = 0.0
Identities = 1829/1980 (92%), Gaps = 29/1980 (1%)
Strand=Plus/Plus
Query 1 TTAAAAATGGCGGCTTTGATCCAGACCGTCCATGGTGTTCTGGTTTTTACCAGAACCTTG 60
||||||||||||||||||||||||||| ||||||||| | ||||| ||||||||||||||
Sbjct 7 TTAAAAATGGCGGCTTTGATCCAGACCATCCATGGTGGTGTGGTTGTTACCAGAACCTTG 66
Query 61 ACTCTTGTTTATCCTTCTACCTTTATGTCCAGACACAAAGCTCTGAACCAAATGATAAGC 120
||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||
Sbjct 67 ACTCTTGTTTATCCTTCTACCTTTACGTCCAGACACAAAGCTCTGAACCAGATGACAAGT 126
Query 121 AGCAGTAACAGTGGCTTGCAACGGTTCAAT-TTCACTCCGCCTCAGCGGCTAAGCCAAGG 179
||||||||||| ||||||| ||||||| | |||||||||||||||||||||||||||||
Sbjct 127 AGCAGTAACAGCGGCTTGCGACGGTTC-CTGTTCACTCCGCCTCAGCGGCTAAGCCAAGG 185
Query 180 TATCTGTTACTGGGGAGAAGAGTTAAG---CAATGTGTCATGCACTTACAGAACCAAACT 236
||||||||||||||||| |||| |||| |||||||||||| ||||||| ||| ||| |
Sbjct 186 TATCTGTTACTGGGGAGCAGAGCTAAGCAACAATGTGTCATGGACTTACAAAACGAAAAT 245
Query 237 GGTGGTTCGGTGCAAGGCCGGAGCAGTGCCTCTGATGAAGCAAGGCGACCGGTTTCTCTC 296
||| ||||| | |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 246 GGTTGTTCGATCCAAGGCCGGAGCAGTGCCTCTGATGAAGCATGGCGACCGGTTTCTCTC 305
Query 297 CTCTCTGTCGTCCCCAGCTTTAGCTGGTGATCCGTCAGCGACACACCGACACATTAAGAA 356
|||||| ||||| ||||| |||||||||||||||||||||| | ||||||||||||||||
Sbjct 306 CTCTCTCTCGTCTCCAGCCTTAGCTGGTGATCCGTCAGCGATAAACCGACACATTAAGAA 365
Query 357 GTTTGTGGCTGCTTCTCCCAAATCAG-TGACTCTAAATGtcctctctcatctcctctcgg 415
||||||||||||||| |||||||||| || |||| ||||||||||||||||||||||| |
Sbjct 366 GTTTGTGGCTGCTTCACCCAAATCAGTTG-CTCTCAATGTCCTCTCTCATCTCCTCTCTG 424
Query 416 atcaaacttcctatcctcatctctccttctttgctctctcttTGTATTCGGAAATTACCG 475
||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 425 ATCAAACTTCCCATCCTCATCTCTCCTTCTTTGCTCTGTCTTTGTATTCGGAAATTACTG 484
Query 476 AAGCATCGTGGTTTGATTGGAATCCTAAACTCATTGCTGAGCTTGTTGCTGTGCTCAATA 535
|||| ||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||
Sbjct 485 AAGCGTCGTGGTTTGATTGGAATCCTAAACTCATTGCTGAACTTATTGCTTTGCTCAATA 544
Query 536 AACAAGAGAGATTTGATGAATCAGAAACTCTACTTTCTACAGCGGTTTCGAGGCTGAAGT 595
||||||| |||||||||||||||||||| ||||||||||| ||||||||||| |||||||
Sbjct 545 AACAAGAAAGATTTGATGAATCAGAAACGCTACTTTCTACTGCGGTTTCGAGACTGAAGT 604
Query 596 CAAATGAACGAGACTTTGCTCTCTTCCTCTGCAATTTGGTTGAATCAAATTCTAAACAAG 655
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 CAAATGAAAGAGACTTTACTCTCTTCCTCTGCAATTTGGTTGAATCAAATTCTAAACAAG 664
Query 656 GGTCTATACAAGGTTTCAATGAAGCATGC-TTTCGTTTGAGAGAGAGAATCCAAAGATCG 714
|||||||||||||||||| |||||||| | |||||||||||||||| ||||||||||||
Sbjct 665 GGTCTATACAAGGTTTCAGTGAAGCAT-CTTTTCGTTTGAGAGAGATAATCCAAAGATCA 723
Query 715 TCATCAATTTATGTCAAAACCCAAGCTTACAAGTCTATGGTTGCTGGATTATGCAACATG 774
|||||| ||||||||||||| ||||||||||||||||||||| |||||||||| ||||||
Sbjct 724 TCATCAGTTTATGTCAAAACTCAAGCTTACAAGTCTATGGTTTCTGGATTATGTAACATG 783
Query 775 GACCAACCTCATGATGCAGAAAGAGTTATCGAGGAGATGAGAGTGGAAAAGATAAAGCCG 834
||||| ||||||||||| |||||||||||||||||||||||| ||||||| |||||||||
Sbjct 784 GACCAGCCTCATGATGCGGAAAGAGTTATCGAGGAGATGAGAATGGAAAAAATAAAGCCG 843
Query 835 GGATCGTTTGAACATAAGTCTGTTCTATACGGGTATGGAAGATTGGGATTGTTTGACGAC 894
|||| ||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 844 GGATTGTTTGAATATAAGTCTGTTCTATACGGCTATGGAAGATTAGGATTGTTTGACGAT 903
Query 895 ATGAACAGAGTAGTGCACAGAATGGAAACCGAAGGTCACAAAATCGACACAGTTTGTTCA 954
|||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 904 ATGAACAGAGTAGTACACAGAATGGGAACAGAAGGTCACAAAATCGACACAGTTTGTTCA 963
Query 955 AATATGGTTCTCTCTTCCTATGGAGCCCATGATGCACTT-CCCCAAATGGGTTCTTGGTT 1013
|||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||
Sbjct 964 AATATGGTTCTCTCTTCCTATGGAGCTCATGATGCA-TTGCCCCAAATGGGTTCTTGGTT 1022
Query 1014 ACAGAAATTGAAGGGTTTTAATGTTCCTTTCTCCATAAGGACGTATAACTCGGTCTTGAA 1073
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 ACAGAAGTTGAAGGGTTTTAATGTTCCTTTCTCCATAAGGACGTATAACTCGGTCTTGAA 1082
Query 1074 TTCTTGTCCTACAATCATGTCACTGTTGAAAGACTTGAATAGCTGTCCGGTTTCTCTTTC 1133
|||||||||||| ||||| ||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1083 TTCTTGTCCTACCATCATATCAATGTTGAAAGACTTGGATAGCTGTCCGGTTTCTCTTTC 1142
Query 1134 TGAACTGCGTACATTTCTGAATGAGGACGAAGCGCTTCTGGTCCATGAATTGACTCAGTC 1193
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1143 TGAACTGCGTACTTTTCTGAATGAGGACGAAGCACTTCTGGTCCATGAATTGACTCAGTC 1202
Query 1194 AACAGTTTTAGATGAAGCAATTGAGTGGACCCCGGCAGAGGGTAAGTTGGATTTACATGG 1253
| ||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||
Sbjct 1203 ATCAGTTTTAGATGAAGCAATTGAGTGGAACGCGGTAGAGGGTAAGTTGGATTTACATGG 1262
Query 1254 TATGCACTTGAGCTCATCGTATTTGATATTGCTGCAATGGATGGATGAGATCAGACTTAG 1313
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1263 TATGCACTTGAGCTCATCGTATTTGATATTGCTGCAATGGATGGATGAGACCAGACTTAG 1322
Query 1314 ATTTAGAGACCAAAAGTGTGTGATTCCTGCCGAGATAGTAGTTATTTCTGGATCCGGAAA 1373
|||||| || |||||||||| |||||||| ||||| |||||| |||||||||| |||||
Sbjct 1323 ATTTAGCGAAGAAAAGTGTGTAATTCCTGCAGAGATTGTAGTTGTTTCTGGATCTGGAAA 1382
Query 1374 GCACAGCAATGTAAGAGGAGAGTCACCGGTAAAAGCGCTGGTTAAAAAGATAATGGTGCG 1433
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1383 GCATAGCAATGTAAGAGGAGAGTCACCGGTGAAAGCGCTGGTTAAAAAGATAATGGTGCG 1442
Query 1434 TACTGGAAGCCCAATGAGAATTGACCGGAAGAATGTTGGTAGTTTTATTGCCAAGGGAAA 1493
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1443 TACTGGAAGCCCGATGAGAATTGACCGGAAGAATGTTGGTAGTTTTATTGCCAAGGGAAA 1502
Query 1494 AAATGTAAAAGAATGGCTCTGCAAATGAAGATTTATAACTGTATATTTTGATCATTATCT 1553
|| ||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1503 AACTGTTAAAGAATGGCTCTGCAAATGAAGATTTATAACTGTATATTTTGATCACAATTT 1562
Query 1554 GCTTAAGATGGTGTTGATTGGTGATTCGTTTTGCTTAGAATC-AAA-C---TCTTGGTGT 1608
||||||||| || | | || || ||||||||| ||||| ||| | |||||||||
Sbjct 1563 GCTTAAGAT--TGATCA--GGA-ATAAGTTTTGCTTGGAATCCAAATCAACTCTTGGTGT 1617
Query 1609 CAAATTTTCCACCAGAACTAATCAGGTGAGTCAAAATTTTCTCTTCACACTCTTAAAATT 1668
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 1618 CAAATTTTCCACCAGAACTAATCAGGTGAGTCGAAATTTTCTCTTTACACTCTTAAAATT 1677
Query 1669 ACCTGCGTGGGAGTAAAATTCTGAATAGCTGGTTTTAGAATAAGAGAAATTTGAACAAAA 1728
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1678 ACCTGCGTGGTAGTAAAATTCTGAATAGCTGGTTTTAGAATAAGAGAAATCTGAACAAAA 1737
Query 1729 ATGATTTCAAATTTCAAGTATATATTAATATATGTTAAACCCTAGAGTTCTGTGAAATTT 1788
|| |||||| |||||||||| ||| |||||||||||||| ||||||||||||
Sbjct 1738 ATCATTTCAGTTTTCAAGTATGTAT--------GTTAAACCCTAGAGCTCTGTGAAATTT 1789
Query 1789 GAACAATAGCTTGTTTGTCTCTGTTTCTGGTGTATCTTTAGCTCTATTCCATGAGGTTTC 1848
|||||||| |||||||| |||||||||||||||||||||||| |||||||||| |||||
Sbjct 1790 TAACAATAGTTTGTTTGTTTCTGTTTCTGGTGTATCTTTAGCTATATTCCATGAAGTTTC 1849
Query 1849 TAGTCTTGAATAATATGTTTAGtttttttCAAGCAATGGCTCTTTAGCTTTTGTTTGTTT 1908
|||||||||||||| ||| |||||| ||||||||||||||||| |||||| ||||||||
Sbjct 1850 TAGTCTTGAATAATGTGTATAGTTTATTTCAAGCAATGGCTCTGGAGCTTTAGTTTGTTT 1909
Query 1909 AAAATTGCAGCTGCTTTAGTCCCTTGATTTGGATACCAAATAAGTGAAAGGTCTTGTCCC 1968
|||| |||| ||||| |||||| |||||||||||| |||||||||||||| |||||||||
Sbjct 1910 AAAAGTGCATCTGCTCTAGTCCTTTGATTTGGATAGCAAATAAGTGAAAGTTCTTGTCCC 1969
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97489458390
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5