BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480589
Length=1272
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17036.1 | Symbols: | F-box family protein with a domain of... 1797 0.0
AT2G17030.1 | Symbols: | F-box family protein with a domain of... 477 1e-133
> AT2G17036.1 | Symbols: | F-box family protein with a domain
of unknown function (DUF295) | chr2:7403856-7405219 FORWARD
LENGTH=1287
Length=1287
Score = 1797 bits (973), Expect = 0.0
Identities = 1162/1251 (93%), Gaps = 22/1251 (2%)
Strand=Plus/Plus
Query 1 ATGGATTGGGCAAAACTCCCGAAGGAACTCTTAGACCTGATCTCCAAATGTCTAGAATCT 60
||||||||||||| ||| || ||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATTGGGCAACACTGCCAAAGGATCTCTTAGACCTGATCTCCAAATGTCTAGAATCT 60
Query 61 TCCTTTGATCTCATCCAGTTCCGTTCTGTATGTTCTTCATGGCGATCCGCCGCGGGGCCA 120
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 TCCTTTGATCTCATACAGTTCCGTTCTGTATGTTCTTCATGGCGATCTGCCGCGGGGCCA 120
Query 121 AAGCGCCTTCTCTGGGCACATAACCTCCCGTTCTTCCCCTCC-ATTGACAAACCCTTTCT 179
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 121 AAGCGCCTTCTCTGGGCACATAACCTCCCGTTCTTCCCCTCTGAT-GACAAACCCTTTCT 179
Query 180 CTCCAATGTAATCCTCCGCGTCGCGCACGGGAGTATTTTACTTATCAAGCCTCATGAACC 239
|||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 180 CTCCAATGTAATCCTCCGCGTCGCGCACCAGAGTATTTTACTTATCAAGCCTAATGAACC 239
Query 240 GCGATGCGAGGCGGATCTGTTTGGATGGATTGTCAAGGTCTGGGATAACATATATGTATC 299
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 240 GCAATGCGAGGCGGATCTGTTTGGATGGATTGTCAAGGTTTGGGATAACATATATGTATC 299
Query 300 TCGTAAGATGACCCTTATCAAACCGATGAGTTTTTCAAGAAACTACATTCCTCGGAATTT 359
|||||||||||||||| |||||||| |||||| ||||||||||||| |||||| | ||||
Sbjct 300 TCGTAAGATGACCCTTCTCAAACCGTTGAGTTCTTCAAGAAACTACTTTCCTCAGCATTT 359
Query 360 ACCTCGAATTCTCGATATGTCTAAATTTAGGGTTCGTGAATTGTGTCGGGAAGTCAAGCT 419
|||||| ||| ||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 360 ACCTCGTATTTTCGATATGTCTAAGTTTACGGTTCGTGAATTGTGTCGGGAAGTCAAGCT 419
Query 420 CTATCATCCTGATTACAACTGTGACCCTGGACACCCACCTTTAGAGTTGGAGTTGGGGAA 479
|||||||||||||||| |||||| |||||||||| || ||||||||||||||||||||||
Sbjct 420 CTATCATCCTGATTACTACTGTGTCCCTGGACACACAGCTTTAGAGTTGGAGTTGGGGAA 479
Query 480 AACTGTTGTCAAGTACCTGGAGGATGACAAATTCGTGTTGCTTACGATTCTTGAATATGA 539
|||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||
Sbjct 480 AACTGTTGTCAAGTACCTAAATGATGACAAATTCGTGTTGCTTACAATTCTTGAATATGG 539
Query 540 AAAGTTAGCTGTGTTTAGGTCTTGGGATCGAGCATGGACTGTGATCAATGATTACATGCC 599
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 540 AAAGTTAGCTGTGTTTAGGTCTTGGGATCGAGAATGGACTGTGATCAATGATTACATACC 599
Query 600 TTTTCGTTGTCAAGATTTAATAATGTTCGATAGACGTTTCTTTGCTATCGACTACAATGG 659
|| ||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||
Sbjct 600 TTCTCGTTGTCAAGATTTGATTATGTTCGATGGACGTTTCTTTGCTATCGACTACAATGG 659
Query 660 GAGGACTGTAGTTGTTGATTACTCTTCGTTCAAATTGACATTGGCCGCTGATCCTTTGAT 719
|||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||
Sbjct 660 GAGGACTGTAGTTGTTGACTACTCTTCTTTCAAATTGACATTGGCCGCTAATCCTTTGAT 719
Query 720 TGGCGGTGGTGACAAGAAGTTTTTGATTGCATCTTGTGGTGAAATGTTTCTGGTGGATAT 779
|||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 720 TGGCGGCGGTGACAAGAAGTTTCTGATTGAATCTTGTGGTGAAATGTTTCTGGTGGATAT 779
Query 780 AGAGTTTTGCA-GAAACAGACCAAATGAGGATCCGGAAATCACCGGGGGTTTCTATTCGT 838
|||||||||| ||| || ||| | |||||| |||| ||||||||||||||||
Sbjct 780 AGAGTTTTGCCTGAAT--GA--AAA--A----CCGGAATTCACAGGGGGTTTCTATTCGT 829
Query 839 ATTTTTATGAGACCACAGTCAGTTACAAATTTAAATTCTTTAAATTAGTGGAAAGAGAGA 898
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 ATTTTAATGAGACCACGGTCAGTTACAAATTTAAATTCTTTAAATTAGTGGAAAGAGAGA 889
Query 899 AGAGATGGGTTGAGGTGGAGCATCTTGGGGATAAGATGTTTTTCCTTGGTGATGACTCCA 958
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 890 AGAGATGGGTTGAGGTTGAGGATCTTGGGGATAAGATGTTTTTCCTTGGTGATGACTCCA 949
Query 959 CATTTTCCGCTTCAGCTGCTGATATTATACCTCTCTGTGTGGGAACTGGAAGCTCCGTGT 1018
| |||||||||||| |||||||||||||||||| ||| |||||||||||||||| |||||
Sbjct 950 CCTTTTCCGCTTCAACTGCTGATATTATACCTCGCTGCGTGGGAACTGGAAGCTTCGTGT 1009
Query 1019 TCTTCTACACGCATGAGGAATCCTTGTTCGTGATGGATGATCGAAACTTGGCAGTGTTTG 1078
|||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||
Sbjct 1010 TCTTCTACACGCATGAGGAATCCTTGGTGGTGATGGATGATCGAAACTTGGGAGTGTTTG 1069
Query 1079 ATATCAGGAGTGGGAAAATAGAGCTGGTAAACAAACTCCCTGAATATGCCAAGTTGTTTT 1138
|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1070 ATTTCAGGAGTGGGAAAACAGAGCTGGTAAACAAACTCCCTGAATATGCCAAGTTGTTTT 1129
Query 1139 GGCCTCCACCTCCCTGGATTACTACTTCTCATGAGGTCAGTAGTTTCCAATCTCTCAACC 1198
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1130 GGCCTCCACCTCCATGGATTACTACTTCTCATGAGGTCAGTGGTTTCCAATCTCTCAACC 1189
Query 1199 ACC-GC---G--T-GT-T-GAAGATAATACTGGAGAAACATCATCCCAATC 1240
||| | | | || | ||| || ||||||||||||||||||| |||||
Sbjct 1190 ACCCGAATAGAGTAGTGTTGAAAATTATACTGGAGAAACATCATCACAATC 1240
> AT2G17030.1 | Symbols: | F-box family protein with a domain
of unknown function (DUF295) | chr2:7399103-7400932 FORWARD
LENGTH=1511
Length=1511
Score = 477 bits (258), Expect = 1e-133
Identities = 929/1234 (75%), Gaps = 122/1234 (10%)
Strand=Plus/Plus
Query 2 TGGATTGGGCAAAACTCCCGAAGGAACTCTTAGACCTGATCTCCAAATGTCTAGAATCTT 61
|||||||| | | ||| |||||||| || |||||||| || || |||| |||||||||||
Sbjct 10 TGGATTGGTCTACACTACCGAAGGATCTTTTAGACCTAATTTCAAAATCTCTAGAATCTT 69
Query 62 CCTTTGATCTCATCCAGTTCCGTTCTGTATGTTCTTCATGGCGATCCGCCGCGGGGCC-- 119
|||| ||||||||||| |||||||| || ||||||||||||||||||||||| | |||
Sbjct 70 CCTTCGATCTCATCCAATTCCGTTCCGTTTGTTCTTCATGGCGATCCGCCGCCGAGCCGA 129
Query 120 AAAGCGCCTTC-TCTGGGCACATAACCTCCCGTTCTTCCCC--T-CCATTGACAAACCCT 175
|||| || || || ||||| | |||||| || ||||| | | | | | ||
Sbjct 130 AAAG-TCC-TCTTC-CAACACATCATCTCCCGATCCTCCCCGATAACGGGGGGAGTCTCT 186
Query 176 T-TCT--CTCCAATG-TAATCCTCCG-CGTCGCGCACG-GGAGTATTTTACTTATCAAGC 229
| || ||| | | | |||| | || |||| | ||||||| |||||||||||||
Sbjct 187 TCCCTGATTCCGCCGTTGGT-TTCCGTC-TCTCGCA-GCGGAGTATCTTACTTATCAAGC 243
Query 230 CTCATGAACCGCG-ATGCGAGGCGGA-TCTGTTTGGATGGATTG-TCAAGGTCTG-GG-A 284
||||||||||| | || ||| |||| || |||||||||| ||| |||| ||| | || |
Sbjct 244 CTCATGAACCGTGTAT-CGAATCGGATTC-GTTTGGATGG-TTGATCAAAGTC-GAGGAA 299
Query 285 TAACATATATGTAT-CTCGTAAGATGACCCTTATCA-AACCGATGA-GTTTTTCAAGAAA 341
| | || |||| | |||||||| |||| ||| | | | ||| | | || | |||||||
Sbjct 300 GATCTTA-ATGT-TCCTCGTAAGGTGACTCTT-TTAGATCCG-TTATGTGATACAAGAAA 355
Query 342 CTAC-ATTCCTCG-GAATTTACCTCGAATTCTCGATATGTCTAAATTTAGGGTTCGTGAA 399
|| | |||||| | |||||| ||||| ||||||||||||| || |||| |||||| |||
Sbjct 356 CT-CAATTCCT-GAGAATTTCCCTCGTGTTCTCGATATGTCCAAGTTTAAGGTTCGAGAA 413
Query 400 TTGTGTCGGGAAGTCAAGCTCTATCATCCTGATTAC-A-ACTG-TGACCCTGGACACCCA 456
||| |||| ||| ||||| || |||| | ||| | | |||| || | || |
Sbjct 414 TTGGGTCGTGAATTCAAG--CT-TCAT--T-ATTTCAATACTGTTG---GT-GATA---T 460
Query 457 CCTTTAGAG-TTGGAGTTGGGGAAAACTGTTGTCAAGTA-C----CTG-GA--G-GATGA 506
| |||| ||| | |||| |||| ||||||| ||||| | || || | ||| |
Sbjct 461 TGTAGAGAGTTTGTATTTGGAGAAAGCTGTTGTTAAGTATCTAGATTGTGATGGAGATTA 520
Query 507 CAAATTCGTGTTGCTTACGATTCTTGAATATGAAAAGTTAGCTGTGTTTAGGTCTTGGGA 566
||||| |||||||||||||||| || | | ||||||||||||||||||||||||||
Sbjct 521 TAAATTTGTGTTGCTTACGATTCATGTTTCGGGGAAGTTAGCTGTGTTTAGGTCTTGGGA 580
Query 567 TCGAGCATGGACTGTGATCAATGATTACATGCCTTTTCGTTGTCAAGATTTAATAATGTT 626
|||||||||||||||||| ||||| |||||||| || || | | ||| | || ||||
Sbjct 581 TCGAGCATGGACTGTGATTAATGA---CATGCCTTCTCCTTATGATGATGTGATGTTGTT 637
Query 627 CGATAGACGTTTCTTTGCTATCGACTA-CAATGGGAGGACTGTAGTTGTTGATTACTCTT 685
|||| ||||||||||||| | || || ||| ||||||||||| ||||| |||||| ||
Sbjct 638 CGATGGACGTTTCTTTGCGGTTGA-TAACAACGGGAGGACTGTGGTTGTGGATTACAGTT 696
Query 686 CGTTCAAATTGACATTGGCCGCTGA-TCCTTTGATTGGCGGTGGTGACAAGAAGTTTTTG 744
| || || ||||| |||| || || |||| || |||| |||||| ||||||||||||
Sbjct 697 CCTTGAAGTTGACGTTGGTTGC-GAGTCCTGTGTTTGG---TGGTGATAAGAAGTTTTTG 752
Query 745 ATTGCATCTTGTGGTGAAATGTTTCTGGTGGATATAG-AGTTTTGC--AGAAACAGACCA 801
|||| |||||||||||||||||| || || ||||| | | || || ||| ||| |
Sbjct 753 ATTGAATCTTGTGGTGAAATGTTGCTTGTTGATAT-GTACTTGAGCTTAGAGGCAGTGGA 811
Query 802 AATGAGGATCC-GGAAATCACCGGGG-G-TTT-CTAT--TCGTA--TTTT-TATGAGACC 852
| | |||||| ||| | | || | ||| | | || | |||| ||||| |
Sbjct 812 AG-G-GGATCCTGGATTTGTT-GAGGAGATTTTCGAGCATCCTGCGTTTTATATGA-ATG 867
Query 853 ACAGT-CAGTTACAAATTTAAATTCTTTAAATTAGTGGAAAGAGAGAAGAGATGGGTTGA 911
| || |||| |||||||||| | | || ||| |||||||||||| |||| ||||||||
Sbjct 868 AGAGAACAGT--CAAATTTAAAGTGTATAGATTTGTGGAAAGAGAGGAGAGTTGGGTTGA 925
Query 912 GGTGGA-GCATCTTGGGGATAAGATGTTTTTCCTTGGTGATGACTCCACATTTTCCGCTT 970
|| | | |||||| |||||||||||| |||||||||||||| ||||| ||||| ||||
Sbjct 926 TGTTTACG-ATCTTGAGGATAAGATGTTGTTCCTTGGTGATGATTCCACCTTTTCTGCTT 984
Query 971 CAGCTGCTGATATTAT-ACCTCTCTGTGTGGGAACTGGAAGCTCCGTGTTCTTCTAC--- 1026
||||| | ||||| || |||||| |||| | ||||||||| ||||||||| ||
Sbjct 985 CAGCTTCCGATAT-ATTACCTCTATGTG----A--TGGAAGCTCTGTGTTCTTCAACGGT 1037
Query 1027 AC-G-C---A-TGAGGAATCCTTGT-TCGTGATGGATGATCGAAACTTGGCAGTGTTTGA 1079
| | | | || |||| |||| | | |||| | |||||| | |||| |||||||||
Sbjct 1038 AATGTCTTCAATGGGGAAGACTTGGGT-GCGATGCAAGATCGAGATTTGGGAGTGTTTGA 1096
Query 1080 -TATCAGGAGTGGGAAAATAGAGCTGGTA-AACAAACTCCCTGAATATGCCAAGTTGTTT 1137
| |||||||||||||||||||||| || || ||||||||||||||||| ||| |||||
Sbjct 1097 CT-TCAGGAGTGGGAAAATAGAGCTAGTGCAA-AAACTCCCTGAATATGCTAAGCTGTTT 1154
Query 1138 TGGCCTCCACCTCCCTGGATTACTACTTCTCATG 1171
|||||||||||||| ||||| | ||||||||||
Sbjct 1155 TGGCCTCCACCTCCTTGGAT-A--ACTTCTCATG 1185
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62549879070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5