BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg480589 Length=1272 Score E Sequences producing significant alignments: (Bits) Value AT2G17036.1 | Symbols: | F-box family protein with a domain of... 1797 0.0 AT2G17030.1 | Symbols: | F-box family protein with a domain of... 477 1e-133 > AT2G17036.1 | Symbols: | F-box family protein with a domain of unknown function (DUF295) | chr2:7403856-7405219 FORWARD LENGTH=1287 Length=1287 Score = 1797 bits (973), Expect = 0.0 Identities = 1162/1251 (93%), Gaps = 22/1251 (2%) Strand=Plus/Plus Query 1 ATGGATTGGGCAAAACTCCCGAAGGAACTCTTAGACCTGATCTCCAAATGTCTAGAATCT 60 ||||||||||||| ||| || ||||| ||||||||||||||||||||||||||||||||| Sbjct 1 ATGGATTGGGCAACACTGCCAAAGGATCTCTTAGACCTGATCTCCAAATGTCTAGAATCT 60 Query 61 TCCTTTGATCTCATCCAGTTCCGTTCTGTATGTTCTTCATGGCGATCCGCCGCGGGGCCA 120 |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 61 TCCTTTGATCTCATACAGTTCCGTTCTGTATGTTCTTCATGGCGATCTGCCGCGGGGCCA 120 Query 121 AAGCGCCTTCTCTGGGCACATAACCTCCCGTTCTTCCCCTCC-ATTGACAAACCCTTTCT 179 ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 121 AAGCGCCTTCTCTGGGCACATAACCTCCCGTTCTTCCCCTCTGAT-GACAAACCCTTTCT 179 Query 180 CTCCAATGTAATCCTCCGCGTCGCGCACGGGAGTATTTTACTTATCAAGCCTCATGAACC 239 |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| Sbjct 180 CTCCAATGTAATCCTCCGCGTCGCGCACCAGAGTATTTTACTTATCAAGCCTAATGAACC 239 Query 240 GCGATGCGAGGCGGATCTGTTTGGATGGATTGTCAAGGTCTGGGATAACATATATGTATC 299 || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 240 GCAATGCGAGGCGGATCTGTTTGGATGGATTGTCAAGGTTTGGGATAACATATATGTATC 299 Query 300 TCGTAAGATGACCCTTATCAAACCGATGAGTTTTTCAAGAAACTACATTCCTCGGAATTT 359 |||||||||||||||| |||||||| |||||| ||||||||||||| |||||| | |||| Sbjct 300 TCGTAAGATGACCCTTCTCAAACCGTTGAGTTCTTCAAGAAACTACTTTCCTCAGCATTT 359 Query 360 ACCTCGAATTCTCGATATGTCTAAATTTAGGGTTCGTGAATTGTGTCGGGAAGTCAAGCT 419 |||||| ||| ||||||||||||| |||| |||||||||||||||||||||||||||||| Sbjct 360 ACCTCGTATTTTCGATATGTCTAAGTTTACGGTTCGTGAATTGTGTCGGGAAGTCAAGCT 419 Query 420 CTATCATCCTGATTACAACTGTGACCCTGGACACCCACCTTTAGAGTTGGAGTTGGGGAA 479 |||||||||||||||| |||||| |||||||||| || |||||||||||||||||||||| Sbjct 420 CTATCATCCTGATTACTACTGTGTCCCTGGACACACAGCTTTAGAGTTGGAGTTGGGGAA 479 Query 480 AACTGTTGTCAAGTACCTGGAGGATGACAAATTCGTGTTGCTTACGATTCTTGAATATGA 539 |||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||| Sbjct 480 AACTGTTGTCAAGTACCTAAATGATGACAAATTCGTGTTGCTTACAATTCTTGAATATGG 539 Query 540 AAAGTTAGCTGTGTTTAGGTCTTGGGATCGAGCATGGACTGTGATCAATGATTACATGCC 599 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || Sbjct 540 AAAGTTAGCTGTGTTTAGGTCTTGGGATCGAGAATGGACTGTGATCAATGATTACATACC 599 Query 600 TTTTCGTTGTCAAGATTTAATAATGTTCGATAGACGTTTCTTTGCTATCGACTACAATGG 659 || ||||||||||||||| || ||||||||| |||||||||||||||||||||||||||| Sbjct 600 TTCTCGTTGTCAAGATTTGATTATGTTCGATGGACGTTTCTTTGCTATCGACTACAATGG 659 Query 660 GAGGACTGTAGTTGTTGATTACTCTTCGTTCAAATTGACATTGGCCGCTGATCCTTTGAT 719 |||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||| Sbjct 660 GAGGACTGTAGTTGTTGACTACTCTTCTTTCAAATTGACATTGGCCGCTAATCCTTTGAT 719 Query 720 TGGCGGTGGTGACAAGAAGTTTTTGATTGCATCTTGTGGTGAAATGTTTCTGGTGGATAT 779 |||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||| Sbjct 720 TGGCGGCGGTGACAAGAAGTTTCTGATTGAATCTTGTGGTGAAATGTTTCTGGTGGATAT 779 Query 780 AGAGTTTTGCA-GAAACAGACCAAATGAGGATCCGGAAATCACCGGGGGTTTCTATTCGT 838 |||||||||| ||| || ||| | |||||| |||| |||||||||||||||| Sbjct 780 AGAGTTTTGCCTGAAT--GA--AAA--A----CCGGAATTCACAGGGGGTTTCTATTCGT 829 Query 839 ATTTTTATGAGACCACAGTCAGTTACAAATTTAAATTCTTTAAATTAGTGGAAAGAGAGA 898 ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 830 ATTTTAATGAGACCACGGTCAGTTACAAATTTAAATTCTTTAAATTAGTGGAAAGAGAGA 889 Query 899 AGAGATGGGTTGAGGTGGAGCATCTTGGGGATAAGATGTTTTTCCTTGGTGATGACTCCA 958 |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| Sbjct 890 AGAGATGGGTTGAGGTTGAGGATCTTGGGGATAAGATGTTTTTCCTTGGTGATGACTCCA 949 Query 959 CATTTTCCGCTTCAGCTGCTGATATTATACCTCTCTGTGTGGGAACTGGAAGCTCCGTGT 1018 | |||||||||||| |||||||||||||||||| ||| |||||||||||||||| ||||| Sbjct 950 CCTTTTCCGCTTCAACTGCTGATATTATACCTCGCTGCGTGGGAACTGGAAGCTTCGTGT 1009 Query 1019 TCTTCTACACGCATGAGGAATCCTTGTTCGTGATGGATGATCGAAACTTGGCAGTGTTTG 1078 |||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||| Sbjct 1010 TCTTCTACACGCATGAGGAATCCTTGGTGGTGATGGATGATCGAAACTTGGGAGTGTTTG 1069 Query 1079 ATATCAGGAGTGGGAAAATAGAGCTGGTAAACAAACTCCCTGAATATGCCAAGTTGTTTT 1138 || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1070 ATTTCAGGAGTGGGAAAACAGAGCTGGTAAACAAACTCCCTGAATATGCCAAGTTGTTTT 1129 Query 1139 GGCCTCCACCTCCCTGGATTACTACTTCTCATGAGGTCAGTAGTTTCCAATCTCTCAACC 1198 ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1130 GGCCTCCACCTCCATGGATTACTACTTCTCATGAGGTCAGTGGTTTCCAATCTCTCAACC 1189 Query 1199 ACC-GC---G--T-GT-T-GAAGATAATACTGGAGAAACATCATCCCAATC 1240 ||| | | | || | ||| || ||||||||||||||||||| ||||| Sbjct 1190 ACCCGAATAGAGTAGTGTTGAAAATTATACTGGAGAAACATCATCACAATC 1240 > AT2G17030.1 | Symbols: | F-box family protein with a domain of unknown function (DUF295) | chr2:7399103-7400932 FORWARD LENGTH=1511 Length=1511 Score = 477 bits (258), Expect = 1e-133 Identities = 929/1234 (75%), Gaps = 122/1234 (10%) Strand=Plus/Plus Query 2 TGGATTGGGCAAAACTCCCGAAGGAACTCTTAGACCTGATCTCCAAATGTCTAGAATCTT 61 |||||||| | | ||| |||||||| || |||||||| || || |||| ||||||||||| Sbjct 10 TGGATTGGTCTACACTACCGAAGGATCTTTTAGACCTAATTTCAAAATCTCTAGAATCTT 69 Query 62 CCTTTGATCTCATCCAGTTCCGTTCTGTATGTTCTTCATGGCGATCCGCCGCGGGGCC-- 119 |||| ||||||||||| |||||||| || ||||||||||||||||||||||| | ||| Sbjct 70 CCTTCGATCTCATCCAATTCCGTTCCGTTTGTTCTTCATGGCGATCCGCCGCCGAGCCGA 129 Query 120 AAAGCGCCTTC-TCTGGGCACATAACCTCCCGTTCTTCCCC--T-CCATTGACAAACCCT 175 |||| || || || ||||| | |||||| || ||||| | | | | | || Sbjct 130 AAAG-TCC-TCTTC-CAACACATCATCTCCCGATCCTCCCCGATAACGGGGGGAGTCTCT 186 Query 176 T-TCT--CTCCAATG-TAATCCTCCG-CGTCGCGCACG-GGAGTATTTTACTTATCAAGC 229 | || ||| | | | |||| | || |||| | ||||||| ||||||||||||| Sbjct 187 TCCCTGATTCCGCCGTTGGT-TTCCGTC-TCTCGCA-GCGGAGTATCTTACTTATCAAGC 243 Query 230 CTCATGAACCGCG-ATGCGAGGCGGA-TCTGTTTGGATGGATTG-TCAAGGTCTG-GG-A 284 ||||||||||| | || ||| |||| || |||||||||| ||| |||| ||| | || | Sbjct 244 CTCATGAACCGTGTAT-CGAATCGGATTC-GTTTGGATGG-TTGATCAAAGTC-GAGGAA 299 Query 285 TAACATATATGTAT-CTCGTAAGATGACCCTTATCA-AACCGATGA-GTTTTTCAAGAAA 341 | | || |||| | |||||||| |||| ||| | | | ||| | | || | ||||||| Sbjct 300 GATCTTA-ATGT-TCCTCGTAAGGTGACTCTT-TTAGATCCG-TTATGTGATACAAGAAA 355 Query 342 CTAC-ATTCCTCG-GAATTTACCTCGAATTCTCGATATGTCTAAATTTAGGGTTCGTGAA 399 || | |||||| | |||||| ||||| ||||||||||||| || |||| |||||| ||| Sbjct 356 CT-CAATTCCT-GAGAATTTCCCTCGTGTTCTCGATATGTCCAAGTTTAAGGTTCGAGAA 413 Query 400 TTGTGTCGGGAAGTCAAGCTCTATCATCCTGATTAC-A-ACTG-TGACCCTGGACACCCA 456 ||| |||| ||| ||||| || |||| | ||| | | |||| || | || | Sbjct 414 TTGGGTCGTGAATTCAAG--CT-TCAT--T-ATTTCAATACTGTTG---GT-GATA---T 460 Query 457 CCTTTAGAG-TTGGAGTTGGGGAAAACTGTTGTCAAGTA-C----CTG-GA--G-GATGA 506 | |||| ||| | |||| |||| ||||||| ||||| | || || | ||| | Sbjct 461 TGTAGAGAGTTTGTATTTGGAGAAAGCTGTTGTTAAGTATCTAGATTGTGATGGAGATTA 520 Query 507 CAAATTCGTGTTGCTTACGATTCTTGAATATGAAAAGTTAGCTGTGTTTAGGTCTTGGGA 566 ||||| |||||||||||||||| || | | |||||||||||||||||||||||||| Sbjct 521 TAAATTTGTGTTGCTTACGATTCATGTTTCGGGGAAGTTAGCTGTGTTTAGGTCTTGGGA 580 Query 567 TCGAGCATGGACTGTGATCAATGATTACATGCCTTTTCGTTGTCAAGATTTAATAATGTT 626 |||||||||||||||||| ||||| |||||||| || || | | ||| | || |||| Sbjct 581 TCGAGCATGGACTGTGATTAATGA---CATGCCTTCTCCTTATGATGATGTGATGTTGTT 637 Query 627 CGATAGACGTTTCTTTGCTATCGACTA-CAATGGGAGGACTGTAGTTGTTGATTACTCTT 685 |||| ||||||||||||| | || || ||| ||||||||||| ||||| |||||| || Sbjct 638 CGATGGACGTTTCTTTGCGGTTGA-TAACAACGGGAGGACTGTGGTTGTGGATTACAGTT 696 Query 686 CGTTCAAATTGACATTGGCCGCTGA-TCCTTTGATTGGCGGTGGTGACAAGAAGTTTTTG 744 | || || ||||| |||| || || |||| || |||| |||||| |||||||||||| Sbjct 697 CCTTGAAGTTGACGTTGGTTGC-GAGTCCTGTGTTTGG---TGGTGATAAGAAGTTTTTG 752 Query 745 ATTGCATCTTGTGGTGAAATGTTTCTGGTGGATATAG-AGTTTTGC--AGAAACAGACCA 801 |||| |||||||||||||||||| || || ||||| | | || || ||| ||| | Sbjct 753 ATTGAATCTTGTGGTGAAATGTTGCTTGTTGATAT-GTACTTGAGCTTAGAGGCAGTGGA 811 Query 802 AATGAGGATCC-GGAAATCACCGGGG-G-TTT-CTAT--TCGTA--TTTT-TATGAGACC 852 | | |||||| ||| | | || | ||| | | || | |||| ||||| | Sbjct 812 AG-G-GGATCCTGGATTTGTT-GAGGAGATTTTCGAGCATCCTGCGTTTTATATGA-ATG 867 Query 853 ACAGT-CAGTTACAAATTTAAATTCTTTAAATTAGTGGAAAGAGAGAAGAGATGGGTTGA 911 | || |||| |||||||||| | | || ||| |||||||||||| |||| |||||||| Sbjct 868 AGAGAACAGT--CAAATTTAAAGTGTATAGATTTGTGGAAAGAGAGGAGAGTTGGGTTGA 925 Query 912 GGTGGA-GCATCTTGGGGATAAGATGTTTTTCCTTGGTGATGACTCCACATTTTCCGCTT 970 || | | |||||| |||||||||||| |||||||||||||| ||||| ||||| |||| Sbjct 926 TGTTTACG-ATCTTGAGGATAAGATGTTGTTCCTTGGTGATGATTCCACCTTTTCTGCTT 984 Query 971 CAGCTGCTGATATTAT-ACCTCTCTGTGTGGGAACTGGAAGCTCCGTGTTCTTCTAC--- 1026 ||||| | ||||| || |||||| |||| | ||||||||| ||||||||| || Sbjct 985 CAGCTTCCGATAT-ATTACCTCTATGTG----A--TGGAAGCTCTGTGTTCTTCAACGGT 1037 Query 1027 AC-G-C---A-TGAGGAATCCTTGT-TCGTGATGGATGATCGAAACTTGGCAGTGTTTGA 1079 | | | | || |||| |||| | | |||| | |||||| | |||| ||||||||| Sbjct 1038 AATGTCTTCAATGGGGAAGACTTGGGT-GCGATGCAAGATCGAGATTTGGGAGTGTTTGA 1096 Query 1080 -TATCAGGAGTGGGAAAATAGAGCTGGTA-AACAAACTCCCTGAATATGCCAAGTTGTTT 1137 | |||||||||||||||||||||| || || ||||||||||||||||| ||| ||||| Sbjct 1097 CT-TCAGGAGTGGGAAAATAGAGCTAGTGCAA-AAACTCCCTGAATATGCTAAGCTGTTT 1154 Query 1138 TGGCCTCCACCTCCCTGGATTACTACTTCTCATG 1171 |||||||||||||| ||||| | |||||||||| Sbjct 1155 TGGCCTCCACCTCCTTGGAT-A--ACTTCTCATG 1185 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62549879070 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5