BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480590
Length=989
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17040.1 | Symbols: anac036, NAC036 | NAC domain containing ... 1434 0.0
> AT2G17040.1 | Symbols: anac036, NAC036 | NAC domain containing
protein 36 | chr2:7407123-7408270 FORWARD LENGTH=981
Length=981
Score = 1434 bits (776), Expect = 0.0
Identities = 924/993 (93%), Gaps = 20/993 (2%)
Strand=Plus/Plus
Query 1 ATGGGAAAAGAGATTGAGCTCCCGGGTTTTAGGTTCCACCCAACCGAGGAAGAGCTTCTT 60
||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1 ATGGGAAAAGATATTGAGCTCCCGGGTTTTAGGTTCCACCCGACTGAGGAAGAGCTTCTT 60
Query 61 GATTTCTACCTCAAGAACATGGTTTACGGTAAAAGATCGAGTGTTGAAGTCATTGGTTTC 120
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 61 GATTTCTACCTCAAGAACATGGTTTACGGTAAGAGATCGAGTGTCGAAGTCATTGGTTTC 120
Query 121 CTCAACATCTATCGTCATGATCCATGGGACTTACCTGGTTTATCGAGAATCGGGGAGAGG 180
|| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTTAACATATACCGTCATGATCCATGGGACTTACCTGGTTTATCGAGAATCGGGGAGAGG 180
Query 181 GAGTGGTACTTCTTTGTGCCAAGGGAAAGGAAGCATGGGAATGGTGGGAGGCCGAGCAGG 240
|| |||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 181 GAATGGTACTTCTTTGTACCAAGGGAAAGGAAGCATGGGAACGGTGGGAGGCCAAGCAGG 240
Query 241 ACAACGGAAAAAGGATATTGGAAAGCAACGGGATCGGATCGTAAAATCATAAGCTTGTCT 300
||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 241 ACAACTGAAAAAGGATATTGGAAAGCAACTGGATCCGATCGTAAAATCATAAGCTTGTCT 300
Query 301 GAGCCAAAACGTGTGATTGGGCTAAAGAAGACGCTTGTGTTCTATAGAGGAAGAGCACCA 360
|||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 301 GAGCCAAAACGTGTTATAGGGCTCAAGAAGACGCTTGTGTTCTATAGAGGAAGAGCACCA 360
Query 361 GGAGGAAGCAAGACTGATTGGGTGATGAACGAGTTTCGGATGCCCGATAATTGCTCCTTA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GGAGGAAGCAAGACTGATTGGGTGATGAACGAGTTTCGGATGCCCGATAATTGCTCCTTA 420
Query 421 CCAAAGGATGTTGTGCTGTGTAAGATATATAGAAAGGCAACTTCATTGAAAGTATTGGAG 480
||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||
Sbjct 421 CCAAAGGATGTTGTGCTTTGTAAGATATATAGAAAAGCTACTTCATTGAAAGTATTGGAG 480
Query 481 CAAAGAGCAGAGATGGAAGCTAAGATGAATCAAACATGTCCAAACTCTCCTCTCTCGTCT 540
||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 481 CAAAGGGCAGAGATGGAAGCTAAGATGAATCAAACATGTCCTAACTCTCCTCTTTCGTCT 540
Query 541 TCCGAGACAATCTCATTCGTTGGAAAAGAAGAAAACATGATGACTTCTTTCCGTGTTCCT 600
|||||||| || || |||||||| ||||||||||||||||||||||| ||||||| ||||
Sbjct 541 TCCGAGACGATTTCTTTCGTTGGTAAAGAAGAAAACATGATGACTTCGTTCCGTGCTCCT 600
Query 601 CAAGTGATAGCCATGGAAGATGCAAACAAGATCCTAA--CACTCCAAGAAAACGCGAAAA 658
||||| ||||| |||||||| ||||||||||||| || || || |||||||||||||||
Sbjct 601 CAAGTAATAGCTATGGAAGAAGCAAACAAGATCCAAATGCA-TC-AAGAAAACGCGAAAA 658
Query 659 CCGAAGAGAAACAAAGAGAAACAGAGACCAAAGAACCTTCTTCATCACTGAAGCTACCGT 718
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 659 CCGAAGAGAAACAAAGAGAAGCAGAGACCAAAGAACCTTCTTCATCACTGAAGCTACCGT 718
Query 719 TTGGAAGCTTACCAGAGCTACAATTACCAAAAGCAGGAGGT-GAATGGGGAGACCAATTG 777
||||||| |||||||||||||||||||||||| |||||| | ||||||| | ||| |||
Sbjct 719 TTGGAAGTTTACCAGAGCTACAATTACCAAAACCAGGAG-TAGAATGGG-A--CCAGTTG 774
Query 778 TTGAGTATAAGCCCATGGCTACAGAATCTTACACCAATAGTTAACCTATTAAATTGGTAG 837
|||||||||||||||||||| |||||||||||||||||||||||| ||| | |||||||
Sbjct 775 TTGAGTATAAGCCCATGGCTCCAGAATCTTACACCAATAGTTAACATAT-A--TTGGTAG 831
Query 838 GATATGTAAAGAACAAATACATT-AACCTATTCTTACTCTTAAGAAAAAACAGAGCTTGT 896
||||||||||||||||||||||| || |||||||||||| ||||||||||||||||
Sbjct 832 GATATGTAAAGAACAAATACATTTAAA-TATTCTTACTCTCGT-AAAAAACAGAGCTTGT 889
Query 897 ACCAAATAGTATTTACTCAACTTATATGTATCTTTTGTAAGTTTGTAACATAATAAGAAA 956
||||||||||||||||| ||||| |||||||||||||||| |||||||||||| || ||
Sbjct 890 ACCAAATAGTATTTACTAAACTTTTATGTATCTTTTGTAATTTTGTAACATAAGAA-AA- 947
Query 957 TTACATGTAACACTGTTTATAGTCATATTTGAC 989
|| ||||||||| ||||||||||||||||||
Sbjct 948 TT---TGTAACACTATTTATAGTCATATTTGAC 977
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48425717708
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5