BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480593
Length=2623
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17110.1 | Symbols: | Protein of unknown function (DUF630 a... 3637 0.0
> AT2G17110.1 | Symbols: | Protein of unknown function (DUF630
and DUF632) | chr2:7442980-7446065 REVERSE LENGTH=2684
Length=2684
Score = 3637 bits (1969), Expect = 0.0
Identities = 2439/2652 (92%), Gaps = 88/2652 (3%)
Strand=Plus/Plus
Query 34 TTCTGATTCTTCGAATCT-GAAGAAATTTCAAAACTTTTTGATTTTGATGGGTTGTTCAA 92
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 50 TTCTGATTCTTCGAATCTCAAAGAAATTTCAAAACTTTTTGATTTTGATGGGTTGTTCAA 109
Query 93 CCTCAAAGCTCGACGATCTTCCAGCGGTGGCGCTTTGTCGTGACCGTTGTAGCTTCCTTG 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 110 CCTCAAAGCTCGACGATCTTCCAGCGGTGGCGCTTTGTCGTGACCGTTGTAGCTTCCTTG 169
Query 153 AAGCAGCGATTCATCAACGTTACGCTTTATCCGAAGCTCACGTATCCTACACACAATCCT 212
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 170 AAGCAGCGATTCATCAACGTTACGCTTTATCAGAAGCTCACGTATCCTACACACAATCCT 229
Query 213 TAAAAGCAATCGCTCACTCTCTTCACCAATTCATCAATCACCACGACCGTAACGACGACG 272
||||||||||| |||||||||||||||||||||||||||||||| ||||| || |
Sbjct 230 TAAAAGCAATCTCTCACTCTCTTCACCAATTCATCAATCACCACCACCGT---TAC-A-- 283
Query 273 ACGATTCGGATTCACCCAAGAAAGCTAAACCCAATATGGATCCTGGGTCGGGTCATCTCG 332
||||||| ||||||||||| |||||||||||||| |||||| ||||||||||||||||||
Sbjct 284 ACGATTCCGATTCACCCAAAAAAGCTAAACCCAAGATGGATTCTGGGTCGGGTCATCTCG 343
Query 333 ATTTCGATTCGGATTCTGA---T---GACGATGATGATATTGATTCGTTGCATTCGTCTC 386
||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||
Sbjct 344 ATTTCGATTCGGATTCTGACTCTGACGACGATGATGATATTGATTCGTTGCATTCATCTC 403
Query 387 CTCTGCATCATCAT-T--TAGACGATGACTCGAATTCGAAATCGTATTTGCATATGAATT 443
|||| ||||||||| | ||| |||||||||||| ||||||||||||||||||||||||
Sbjct 404 CTCTCCATCATCATCTAGAAGATGATGACTCGAATCCGAAATCGTATTTGCATATGAATT 463
Query 444 ATATGAAGAACAGTTCTATGCCTCCTTCTGTGGTTTATGAGCAGAGACCTTCGAGTCCTC 503
|||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 464 ATATGAAGAATAGTTATATGCCTCCTTCTTTGGTTTATGAGCAGAGACCTTCGAGTCCTC 523
Query 504 AGAGAGTTTATTTCGGTG----A--ATCATCATCAACCTCTGAGTATTACCATCCATATC 557
|||||||| ||||||||| | ||||||||||||||||||||| || |||||||||
Sbjct 524 AGAGAGTTCATTTCGGTGAATCATCATCATCATCAACCTCTGAGTA-TA--ATCCATATC 580
Query 558 TGAA-T-----T-C-GA--G--ATTGCCTCCGGCGCCACCATCGCCACCGAGGGAAAAGG 605
|||| | | | || | |||||||||| ||||||| ||||| |||||||||||||
Sbjct 581 TGAATTCGAACTACGGATCGAAATTGCCTCCGCCGCCACCGTCGCCGCCGAGGGAAAAGG 640
Query 606 TTTGGGATTTCTTAAACCCTTTTGATACGTATTATACTCCGTACACTCCTAGTCGTGATT 665
|||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 641 TTTGGGATTTCTTAGACCCTTTTGATACGTATTATACTCCGTATACTCCTAGTCGTGATA 700
Query 666 CGAGAGAGATAAGAGAGGAATTGGGTGTTCCGGATTTAGAGGATGATGATG-AGGTTGTC 724
|||||||| ||||||| |||||||||||||||||||||||||| ||||||| | |||||
Sbjct 701 CGAGAGAGTTAAGAGATGAATTGGGTGTTCCGGATTTAGAGGAAGATGATGTA-GTTGTT 759
Query 725 AAGGAAGTACATGGGAAACAGAAATTTGTGGCTGCAGTTTCTGTGGAAGAGCCGTTAGGT 784
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 760 AAGGAAGTACATGGGAAACAGAAATTTGTAGCTGCAGTTTCTGTGGAAGAGCCGTTAGGT 819
Query 785 AACTCCGGTGCTAGCACTAGCggaggaggaggaggaggagAAGGTCAGGCTTCTTTGTAT 844
|||||||||||||||||||||||||||||||||||| | | |||| ||||||||||||||
Sbjct 820 AACTCCGGTGCTAGCACTAGCGGAGGAGGAGGAGGA-G-G-AGGTAAGGCTTCTTTGTAT 876
Query 845 CAGACTAGGCCAAGTGTGTCAGTTGGGAAAGAAGAAATGGAGCATGAGGTTCATGTTGTG 904
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 877 CAGACTAGGCCAAGTGTGTCAGTTGAGAAAGAAGAAATGGAGCATGAGGTTCATATTGTG 936
Query 905 GAGAAGAAAGTTGTTGAGGATGGTGGAGGTGGGGATGAGGTGCGGAAGAGTAATGCTGCG 964
||||| ||| ||||||||||| || ||||||||||||||| |||||||||| ||||||
Sbjct 937 GAGAAAAAAATTGTTGAGGATAGT---GGTGGGGATGAGGTGAGGAAGAGTAAGGCTGCG 993
Query 965 GTCGCACGTGGTGGTGGCGATGTTC-GGCGTAGGGTGCCTGAGGTTGCGAAAGAGATAGA 1023
|| |||||||||||||||| || || | ||| |||| |||||||||||||||||||||||
Sbjct 994 GTGGCACGTGGTGGTGGCGGTG-TCAGACGTGGGGTTCCTGAGGTTGCGAAAGAGATAGA 1052
Query 1024 AGCTCAGTTCTTGAGAGCTGCAGAGTCAGGAAATGAGATTGCAGTGATGCTTGAAGTGGG 1083
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1053 AGCTCAGTTCTTGAGAGCTGCAGAGTCAGGAAATGAGATCGCAGTGATGCTTGAAGTGGG 1112
Query 1084 GAAGCATCCTTATGGTCGCAAACATGTTTCATCGAAGAAGCTGCATGAGGTTAACCCATC 1143
||| ||||| |||||||||||| ||||||| ||||||||||| |||||| | ||||||
Sbjct 1113 GAAACATCCATATGGTCGCAAAAATGTTTCTTCGAAGAAGCTATATGAGGGGACCCCATC 1172
Query 1144 ACCGTCTGTGGTTTCGTCAGCTCAATCATCAACCTCCAAGAAAGCTAAAGCTGAAGCCTC 1203
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1173 ACCGTCTGTGGTTTCGTCAGCTCAATCATCAACCTCCAAAAAAGCTAAAGCTGAAGCCTC 1232
Query 1204 TTCTTCAGTGGCTGCTCCTACTTACGCAGACATTGAGGCAGAGCTTGCTTTAAGGTCTCG 1263
|||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 1233 TTCTTCAGTGACTGCTCCTACTTATGCAGACATTGAGGCAGAGCTTGCTTTAAAGTCTCG 1292
Query 1264 TAATCTTTCTTCGACATTGCACAAGCTCCACCTTTGGGAGAAGAAGCTTTATGACGAAGT 1323
||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 1293 TAATCTTTCTTCGACATTGCACAAGCTCCACCTTTGGGAGAAGAAGCTTTACGATGAGGT 1352
Query 1324 CAAGGCTGAGGAAAAACTGCGTGTAAACCACGAGAAAAAGTTAAGGAAGCTGAAGCGTAT 1383
|||||| ||||||||| ||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1353 CAAGGCCGAGGAAAAAATGCGTGTAAACCATGAGAAAAAGTTAAGGAAGCTTAAGCGTAT 1412
Query 1384 GGATGAAAGAGGTGTCGAGGATCAAAAAGTAGATTCAACACGAAAATTAGTTAGAAGTAT 1443
|||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1413 GGATGAAAGAGGTGCCGAGAATCAAAAAGTAGATTCAACACGAAAATTAGTTAGAAGTTT 1472
Query 1444 GTCCTCAAAGATAAGGATTGCGATTCAAGTTGTTGACAAAATATCAATTACAATTAACAA 1503
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1473 GTCCACAAAGATAAGGATTGCGATTCAAGTTGTTGACAAAATATCAGTTACAATTAACAA 1532
Query 1504 GATAAGAGACGAAGAGCTATGGCTGCAACTCAATGAATTGATCCAAGGGCTTAGCAAAAT 1563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1533 GATAAGAGACGAAGAGCTATGGCTGCAACTCAATGAATTGATCCAAGGGCTTAGCAAAAT 1592
Query 1564 GTGGAAATCTATGCTCGAGTGCCATCAAAGTCAGTGTGAGGCTATTAAGGAAGCCAGAGG 1623
||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1593 GTGGAAATCCATGCTTGAGTGCCATAAAAGTCAGTGTGAGGCTATTAAGGAAGCCAGAGG 1652
Query 1624 TTTAGGCCCCATTAGAGCGAGTAAAAAACTTGGTGACAATCATCTCGAGGTTTCAAGGAC 1683
|||||||||||||||||| || ||||| |||||| | ||||||||||| |||||||
Sbjct 1653 TTTAGGCCCCATTAGAGCAAGCAAAAATTTTGGTGGGGAGCATCTCGAGGTAACAAGGAC 1712
Query 1684 GCTTGGGCT-TGATCTTATAAATTGGATTGTGGGATTCTCGAGTTGGGTTAGTGCGCAAA 1742
|||| || | ||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1713 GCTT-GGATATGAACTTATAAATTGGATTGTGGGATTTTCGAGTTGGGTTAGTGCGCAAA 1771
Query 1743 AGGGTTTTGTACGAGAGCTGAATAGTTGGCTTATGAAGTGTCTTTTCTATGAACCTGAGG 1802
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1772 AGGGTTTTGTAAGAGAGCTGAATAGTTGGCTTATGAAGTGTCTTTTCTATGAACCTGAGG 1831
Query 1803 AAACTCCCGATGGAATTGTTCCTTTTTCTCCTAGTCGTATTGGGGCTCCATTGATTTTCG 1862
||||||| |||||||| ||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1832 AAACTCCAGATGGAATCGTTCCTTTTTCTCCTGGTCGTATTGGGGCTCCAATGATTTTCG 1891
Query 1863 TGATCTGTAACCAGTGGGAACAAGCTCTGGATAGAATATCAGAAAAGGAAGTTATCGAGG 1922
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1892 TGATCTGTAACCAGTGGGAACAAGCTCTAGATAGAATATCAGAAAAGGAAGTTATCGAGG 1951
Query 1923 CTATACGCCGTTTCACAACGAGTGTGCTTCATCTTTGGGAACAAGATAGGTTAGCAACCC 1982
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1952 CTATACGCCGTTTCACAACGAGTGTGCTTCATCTTTGGGAACAAGATAGGTTAGCAACCC 2011
Query 1983 GGGATAGGATGATGGGGCATGGTGATCCAAGGAATATGGACCGAGAGGAACTGAGAATCC 2042
|||| ||||| || |||||||||||||| |||||||||||||||||||||| |||||| |
Sbjct 2012 GGGAGAGGATTATAGGGCATGGTGATCCTAGGAATATGGACCGAGAGGAACAGAGAATAC 2071
Query 2043 AGAAAGAGATTCAAGAATTGGAAATGAAAATGGTTCTGGTGGGTCC-GGCCGAGGATAAC 2101
|||||||||||||||||||||||||||||||||||||||| ||||| || || ||||||
Sbjct 2072 AGAAAGAGATTCAAGAATTGGAAATGAAAATGGTTCTGGTTGGTCCAGG-GGAAGATAAC 2130
Query 2102 ATTGTCTACCAAAGCGACACTAGTAACGAGAGTTTACAGGGTAGTCTTCAACGTATATTT 2161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2131 ATTGTCTACCAAAGCGACACTAGTAACGAGAGTTTACAGGGTAGTCTTCAACGTATATTT 2190
Query 2162 GAAGCTATGGAGAGATTTACAGAGGAATCTGTGAAAGCTTATGTAGATCTCTTGCATCGT 2221
|||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 2191 GAAGCTATGGAGAGGTTTACAGAGGAATCTCTGAAAGCTTATGTAGATCTCTTACATCGT 2250
Query 2222 GCTGAAGAAGATGAATGCGGCTCTCGGGAAACAGATGAAGAAGACTAATGGAAAACCGAG 2281
||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 2251 GCTGAAGAAGAAGAATGCGACTCTCGGGAAACAGATGAAGAAGACTAATGGAAAACCGTG 2310
Query 2282 GATGAAAGTATTGCATGACC-AAAAAACTCATCATAGAGTTGTGAGGCTTAAGACAGCTA 2340
|| |||||||| |||| ||| |||||||||||| |||||||||||||||||||||||||
Sbjct 2311 GAGGAAAGTATCGCATAACCAAAAAAACTCATC--AGAGTTGTGAGGCTTAAGACAGCTA 2368
Query 2341 A-TTTATGCTTGGCCATGGTTGCATGTTCAGCCATAACTCAGCTCTGCCCGGTCTATAGA 2399
| ||| |||||||||||||||||||| |||||||| |||||||||||| ||| ||||||
Sbjct 2369 ATTTTGTGCTTGGCCATGGTTGCATGATCAGCCATTACTCAGCTCTGCGTGGTTTATAGA 2428
Query 2400 CCGGAGTACCAGACCAGA-TT-CATAT-A-T-G-----ACT-GG-TGTT-----TAA--- 2439
|||||||||| | ||||| || |||| | | | | | || ||| |||
Sbjct 2429 CCGGAGTACCGGGCCAGATTTATATATGACTGGTATTTAATGGGAAGTTACACATAATCT 2488
Query 2440 ----T-GGCATGGGCACTAACTGCT-CC-GCGGAGACATTGGATAAAGAGATGGGTC-AA 2491
| |||| |||||||||||||| || ||||||||||||||||||||||||||| ||
Sbjct 2489 TCCCTAGGCACGGGCACTAACTGCTCCCTCCGGAGACATTGGATAAAGAGATGGGTCAAA 2548
Query 2492 TGCTCGGTTAACGGAAGAAGGTGCTTGCCCTATTGAAGAACTGGGTGTTTAGTTAAATAC 2551
|||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
Sbjct 2549 TGCTCGGTTAACGGAAGAAGGTGCTTGCCCTATTGAAGAACTGGATGGTTAGTTA----C 2604
Query 2552 CCATGGTTGGATAGAAATGTAAGATAATTTGCCACACATAATGCAAGTTACTGGTGTAGC 2611
| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 2605 C-ATGGTTGGATAGAAATGTAAGAGAATTTGCCACACATCATGCAAGTTACTGGTGTAGC 2663
Query 2612 TCAAGCTACGAT 2623
||||||||||||
Sbjct 2664 TCAAGCTACGAT 2675
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 130233384028
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5