BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480594
Length=1402
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17130.1 | Symbols: IDH2, IDH-II | isocitrate dehydrogenase ... 2152 0.0
AT4G35260.1 | Symbols: IDH1, IDH-I | isocitrate dehydrogenase 1... 1046 0.0
> AT2G17130.1 | Symbols: IDH2, IDH-II | isocitrate dehydrogenase
subunit 2 | chr2:7460814-7462554 REVERSE LENGTH=1440
Length=1440
Score = 2152 bits (1165), Expect = 0.0
Identities = 1327/1406 (94%), Gaps = 8/1406 (1%)
Strand=Plus/Plus
Query 1 TCTTCTTCCTCTGACGATCATCTTCTGAAGAATCTGATTCCGATCAAAATCACAGAAGAA 60
||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||
Sbjct 28 TCTTCTTCCTCTGACGATCATTTTCAGAAGAATCTGATTCCGATCAAAATTGCAGAAGAA 87
Query 61 GATGTCTCGCCAATCGATTTCACTACTGAAGAATCTTCGTAGTATCGCCACCGGTTCCAA 120
|||||||||||||||| |||| |||||||||||||||||||| ||||| ||||||||||
Sbjct 88 GATGTCTCGCCAATCGTTTTCTCTACTGAAGAATCTTCGTAGCATCGCTTCCGGTTCCAA 147
Query 121 AATTCAGACCCGATCCGTGACTTACATGCCCAGACCCGGCGACGGAAAACCACGACCGGT 180
||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||
Sbjct 148 AATCCAGACCCGATCCGTGACTTACATGCCCAGACCCGGTGACGGAAAACCAAGACCAGT 207
Query 181 AACGTTAATCCCCGGCGACGGAGTTGGTCCGTTGGTAACAAACGCGGTTGAACAAGTGAT 240
|||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 208 GACGTTAATCCCCGGAGACGGAGTTGGTCCGTTGGTAACAAACGCGGTTCAACAAGTGAT 267
Query 241 GAAAGCGATGCACGCACCGGTTTACTTCGAACCGTTCGAAGTTCATGGAGATATGAAGAG 300
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 268 GGAAGCGATGCACGCTCCGGTTTACTTCGAACCGTTCGAAGTTCATGGAGATATGAAGAG 327
Query 301 TTTACCTGAAGGATTATTGGAATCGATTAAGAAGAACAAAGTTTGTTTGAAAGGTGGGCT 360
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 328 TTTACCTGAAGGATTGTTGGAATCGATTAAGAAGAACAAAGTTTGTTTGAAAGGTGGTCT 387
Query 361 CAAGACTCCCGTCGGTGGTGGTGTGAGTTCTCTCAATGTTAATCTGAGAAAGGAGCTTGA 420
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 388 TAAGACTCCCGTCGGTGGTGGTGTGAGCTCTCTCAATGTTAATCTGAGAAAGGAGCTTGA 447
Query 421 TCTCTTCGCTTCTTTGGTCAACTGTTTCAATTTGCCTGGTTTAGCTTCGCGTCATGAGAA 480
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 448 TCTCTTTGCTTCTTTGGTCAACTGTTTCAATTTGCCTGGTTTAGCTTCTCGTCATGAGAA 507
Query 481 TGTTGATATTGTTGTGATTAGAGAGAACACTGAAGGTGAATATGCAGGTCTTGAACATGA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 508 TGTTGATATTGTTGTGATTAGAGAGAACACTGAAGGTGAATATGCAGGTCTTGAACATGA 567
Query 541 AGTTGTTCCTGGTGTTGTTGAGAGCCTTAAGGTGAATACAAAGTTCTGTTCGGAGCGTAT 600
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 568 AGTTGTTCCTGGTGTTGTTGAGAGCCTTAAGGTGATTACAAAGTTCTGTTCAGAGCGTAT 627
Query 601 TGCAAAGTATGCGTTTGAGTATGCTTACTTGAACAACAGGAAGAAAGTTACAGCAGTGCA 660
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 628 TGCAAAGTATGCGTTTGAGTATGCCTACTTGAACAACAGGAAGAAAGTTACAGCAGTGCA 687
Query 661 CAAGGCTAACATCATGAAACTGGCTGATGGTTTGTTCTTGGAATCTTGTCAAGAGGTTGC 720
||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 688 CAAGGCTAATATCATGAAATTGGCTGATGGTTTGTTCTTGGAGTCTTGTCAAGAGGTTGC 747
Query 721 TAAGAAGTATCCAAGCATTGCCTACAATGAAATCATTGTTGATAACTGTTGTATGCAACT 780
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 748 TAAGAAGTATCCAAGCATTGCTTACAATGAAATCATTGTTGATAATTGTTGTATGCAACT 807
Query 781 TGTAGCTAGACCAGAGCAATTCGATGTCATGGTGACGCCCAATCTCTATGGTAATCTTGT 840
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 808 TGTGGCTAGACCAGAGCAATTCGATGTCATGGTGACGCCTAATCTCTATGGTAATCTAGT 867
Query 841 TGCAAATACTGCTGCTGGTATTGCTGGAGGCACTGGAGTCATGCCTGGAGGGAATGTTGG 900
||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 868 GGCAAACACTGCTGCTGGTATTGCTGGAGGTACTGGAGTCATGCCTGGAGGAAATGTTGG 927
Query 901 GGCGGAGTATGCGGTCTTTGAGCAAGGTGCATCAGCGGGAAACGTGGGGAAGGATACAAC 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 928 GGCGGAGTATGCGGTCTTTGAGCAAGGTGCATCAGCGGGAAACGTGGGGAAGGATACAAC 987
Query 961 GGAAGAGCAAAAGAATGCAAACCCTGTGGCTTTGTTGCTGTCATCAGCCATGATGCTTAG 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 988 GGAAGAGCAAAAGAATGCAAACCCTGTGGCTTTGTTGCTGTCATCAGCCATGATGCTTAG 1047
Query 1021 ACACCTTCAGTTCCCTTCTTTTGCTGACAGGCTTGAAACCGCTGTGAAGCGTGTTATCGC 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1048 ACACCTTCAGTTCCCTTCTTTTGCTGACAGGCTTGAAACCGCTGTGAAGCGTGTTATCGC 1107
Query 1081 TGAAGGAAAGTGCCGGACTGAAGATCTTGGCGGAAACAGTACGACACAAGAGGTCGTTGA 1140
|||||| || || ||||||||||||||||| ||||||||||| || ||||||||||||||
Sbjct 1108 TGAAGGGAATTGTCGGACTGAAGATCTTGGTGGAAACAGTACCACTCAAGAGGTCGTTGA 1167
Query 1141 CGCTGTCATTGCAAATTTGGATTGACTTGACAATTCCAACTTCTCTTGCGTAAT-CATCA 1199
||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||
Sbjct 1168 CGCTGTCATTGCAAATTTGGATTGACTTGACAATTCCAACTTCGCTTGTGTAAAGCATCA 1227
Query 1200 ATCACACGTCGGTATGATTCACACTTACCGGAAA-TACTTGTCATTTTTCACATTCTTTC 1258
||||||||||||||||||||| ||||| ||||| ||||| | | || |||||||||||
Sbjct 1228 GTCACACGTCGGTATGATTCACGCTTACTGGAAAATACTTCT-AGTTCCCACATTCTTTC 1286
Query 1259 GAGATAACTCGAATTGGAATTTAAAATTTCGAGAAAAATAACATGGttttttattttgtt 1318
||||||||||||||||| |||| | ||||||||||||||||||| | ||| ||| |||
Sbjct 1287 GAGATAACTCGAATTGGGATTTCAGATTTCGAGAAAAATAACATA-TGGTTT-TTT-GTT 1343
Query 1319 ttgttttccttctttttGTTCATGTAGTATGCAAAGTGCAAA-TGCCT-CAGTTTCAGAG 1376
||||||| |||||||||||||||||| ||||||||||||||| || | | ||||||
Sbjct 1344 TTGTTTTTCTTCTTTTTGTTCATGTAATATGCAAAGTGCAAAGTGAAAACTGCCTCAGAG 1403
Query 1377 CAGTACTTTTTGAATAATGAAAATTA 1402
|| || ||||||||||||||||||||
Sbjct 1404 CATTATTTTTTGAATAATGAAAATTA 1429
> AT4G35260.1 | Symbols: IDH1, IDH-I | isocitrate dehydrogenase
1 | chr4:16774195-16776325 REVERSE LENGTH=1495
Length=1495
Score = 1046 bits (566), Expect = 0.0
Identities = 909/1071 (85%), Gaps = 37/1071 (3%)
Strand=Plus/Plus
Query 122 ATTCAGACCCGATCCGTGACTTACATGCCCAGACCCGGCGACGGAAAACCACGAC-CGGT 180
||||| |||||||||||||||||||||||||||||||| |||||| |||||| | | ||
Sbjct 153 ATTCAAACCCGATCCGTGACTTACATGCCCAGACCCGGTGACGGAGCACCACG-CGCAGT 211
Query 181 AACGTTAATCCCCGGCGACGGAGTTGGTCCGT-TGGTAACAAACGCGGTTGAACAAGTGA 239
||| | |||||||| || ||| | ||||| | |||| || ||||| || ||||| ||||
Sbjct 212 GACGCTGATCCCCGGAGATGGAATCGGTCC-TCTGGTGACGAACGCCGTGGAACAGGTGA 270
Query 240 TGAAAGCGATGCACGCACCGGT-TTACTTCGA-ACCGTTCGAAGTTCATGGAGATATGAA 297
|| ||||||||||||| ||| | || |||||| | || ||| ||||| ||||| ||| |
Sbjct 271 TGGAAGCGATGCACGCTCCGATCTT-CTTCGAGA-AGTACGATGTTCACGGAGAAATG-A 327
Query 298 G-AGTTTACCTGAAGG-A-TTATTGGAATCGATTAA-GAAGAACAAAGTTTGTTTGAAAG 353
| || | || | || | | | |||| |||| ||| |||||| || |||||||||||||
Sbjct 328 GCCGTGTGCC-GCCGGAAGTGA-TGGAGTCGA-TAAGGAAGAATAAGGTTTGTTTGAAAG 384
Query 354 GTGGGCTCAAGACTCCCGTCGGTGGTGGTGTGAGTTCTCTCAATGTTAATCTGA-GAAAG 412
||||||| |||||||| || ||||||||||| |||||||| || || | || | ||||
Sbjct 385 GTGGGCTTAAGACTCCTGTTGGTGGTGGTGTTAGTTCTCTTAACGTCCAGCTTAGGAAA- 443
Query 413 GAGCTTGATCTCTTCGCTTCTTTGGTCAACTGTTTCAATTTGCCTGGTTTAGCTTCGCGT 472
|||||||| ||||| |||||| ||||||||||||| ||||||||||||||| || | ||
Sbjct 444 GAGCTTGACCTCTTTGCTTCTCTGGTCAACTGTTTTAATTTGCCTGGTTTACCTACTCGC 503
Query 473 CATGAGAATGTTGATATTGTTGTGATTAGAGAGAACACTGAAGGTGAATATGCAGGTCTT 532
|||||||||||||| || ||||| || |||||||||||||||||||| || || || |||
Sbjct 504 CATGAGAATGTTGACATCGTTGTCATCAGAGAGAACACTGAAGGTGAGTACGCGGGGCTT 563
Query 533 GAACATGAAGTTGTTCCTGGTGTTGTTGAGAGCCTTAAGGTGAAT-ACAAAGTTCTGTTC 591
|| || || |||||||||||||| |||||||| || |||||| || || |||||||||||
Sbjct 564 GAGCACGAGGTTGTTCCTGGTGTCGTTGAGAGTCTGAAGGTG-ATCACGAAGTTCTGTTC 622
Query 592 GGAGCGTATTGCAAAGTATGCGTTTGAGTATGCTTACTTGAACAACAGGAAGAAAGTTAC 651
||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||
Sbjct 623 GGAGCGTATTGCAAAGTATGCTTTTGAGTATGCCTACCTGAACAACAGGAAGAAAGTTAC 682
Query 652 AGCAGTGCACAAGGCTAACATCATGAAACTGGCTGATGGTTTGTTCTTGGAATCTTGTCA 711
||| ||||| |||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 683 AGCGGTGCATAAGGCTAACATCATGAAACTTGCGGATGGTTTGTTCTTGGAATCTTGTCG 742
Query 712 AGAGGTTGCTAAGAAGTATCCAAGCATTGCCTACAATGAAATCATTGTTGATAACTGTTG 771
|||||||| || |||||||| ||||| |||||||||||||||||||||||||||| ||
Sbjct 743 CGAGGTTGCGAAAAAGTATCCCAGCATCACCTACAATGAAATCATTGTTGATAACTGCTG 802
Query 772 TATGCAACTTGTAGCTAGACCAGAGCAATTCGATGTCATGGTGACGCCCAATCTCTATGG 831
||||||||||||||| | |||||||||||||||||||||||| ||||| |||||||||||
Sbjct 803 TATGCAACTTGTAGCCAAACCAGAGCAATTCGATGTCATGGTAACGCCGAATCTCTATGG 862
Query 832 TAATCTT-GTTGCAAATACTGCTGCTGGTATTGCTGGAGGCACTGGAGTCATGCCTGGAG 890
||| || |||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 863 GAAT-TTAGTTGCAAACACTGCTGCTGGTATTGCTGGAGGCACAGGAGTCATGCCTGGAG 921
Query 891 GGAATGTTGGGGCGGAGTATGCGGTCTTTGAGCAAGGTGCATCAGCGGGAAACGTGGGGA 950
| ||||||||||| || ||||||| || ||||||||||||||||| ||||| || ||||
Sbjct 922 GAAATGTTGGGGCTGACCATGCGGTATTCGAGCAAGGTGCATCAGCAGGAAATGTTGGGA 981
Query 951 AGGATACAACGGA-AG-A--GCAAAAGAATGCAAACCCTGTGGCTTTG-TTGCTGTCATC 1005
| || ||| | | || | | |||| || |||||||| ||||| ||| || || |||||
Sbjct 982 AAGA--CAA-G-ATAGTATTGGAAAACAAAGCAAACCCAGTGGCATTGCTT-CTCTCATC 1036
Query 1006 AGCCATGATGCTTAGACACCTTCAGTTCCCTTCTTTTGCTGACAGGCTTGAAACCGCTGT 1065
||| ||||||||||||||||||||||| ||||| ||||||||| |||| ||||| || ||
Sbjct 1037 AGCGATGATGCTTAGACACCTTCAGTTTCCTTCATTTGCTGACCGGCTCGAAACAGCAGT 1096
Query 1066 GAAGCGTGTTATCGCTGAAGGAAAGTGCCGGACTGAA-GATCTTGGCGGAAACA-GTACG 1123
|||| || ||||||||||||||||||||||| ||| |||||||| |||| || | |||
Sbjct 1097 GAAGAAAGTCATCGCTGAAGGAAAGTGCCGGAC-GAAAGATCTTGGTGGAA-CAAGCACG 1154
Query 1124 ACACAAGAGGTCGTTGACGCTGTCATTGCAAATTTGGATTGACTT-GACAA 1173
|| |||||||||||||| || ||||||||||| | || |||||| |||||
Sbjct 1155 ACTCAAGAGGTCGTTGATGCGGTCATTGCAAAACTAGACTGACTTTGACAA 1205
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69075949920
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5