BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480599
Length=837
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17170.1 | Symbols: | Protein kinase superfamily protein | ... 1238 0.0
AT4G35230.1 | Symbols: BSK1 | BR-signaling kinase 1 | chr4:1675... 165 6e-40
> AT2G17170.1 | Symbols: | Protein kinase superfamily protein
| chr2:7474736-7476438 FORWARD LENGTH=987
Length=987
Score = 1238 bits (670), Expect = 0.0
Identities = 776/828 (94%), Gaps = 4/828 (0%)
Strand=Plus/Plus
Query 12 CAAGAACGACGGATTCGTCAACTGGCCTTTCATAGAGTTCTTCCTCTCCGATCTCACGAA 71
|||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||| |
Sbjct 81 CAAGAACGACGGATTCGTCAACTGGCCTGTCACAGAGTTCTTCCTCTCCGATATCACCAC 140
Query 72 GGCGACCAAGAACTTCAGTACCGACGAGATCATATCAGAGAACGCAGAAGAATCCTCCAA 131
||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 141 GGCGACCAATAACTTCAGTTCCGACGAGATCATATCAGAGAACGCAGAAGAATCTTCCAA 200
Query 132 TTTTGTCTACAAGGGTCGTTTATCAGAGAATCTTGGTTTCGTCGCTGTCAAGAGATTCAA 191
| |||||||||| ||| |||||| |||||||||||| ||||| |||||||||||||||||
Sbjct 201 TGTTGTCTACAAAGGTTGTTTATTAGAGAATCTTGGCTTCGTAGCTGTCAAGAGATTCAA 260
Query 192 GAATACGCCTTGGCCTGATCATGAATACTTCACGGAAGACGCAAAAACAGCTGGAGAGCT 251
||||||||||||| ||||| ||| ||||||||||||||||||||||||||||| |||||
Sbjct 261 GAATACGCCTTGGGATGATCCTGACTACTTCACGGAAGACGCAAAAACAGCTGGGGAGCT 320
Query 252 AAAACACAAGAGACTCGTCAAGTTGATGGGATATTGTTGTGATGAAGATGAAGGACTTCT 311
||| ||||||||||| ||||||||| |||||||||| || || |||||||||||||||||
Sbjct 321 AAAGCACAAGAGACTTGTCAAGTTGTTGGGATATTGCTGCGAGGAAGATGAAGGACTTCT 380
Query 312 TGTTGCAGAGTTCATGCCTAATGATACTCTTGCTAAGCGTTTATTCCAGGAGAAGAACAT 371
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 381 TGTTGCAGAGTTTATGCCAAATGATACTCTTGCTAAGCGTTTATTCCAGGAGAAGAACAT 440
Query 372 GGAATGGTCAATGAGGTTGCGAGTGGCTTATCATATAGCTGAAGCATTGGATTATTGCAA 431
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 441 GGAATGGTCAATGAGGTTGCGAGTGGCGTATCATATAGTTGAAGCATTGGATTATTGCAA 500
Query 432 TAGTGTACGTTTTGACGAGTACCATAATCTAAGTGCTTACACTGTTCTGTTTGATAAGGA 491
| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 501 TTCTGTACGTTTTGACGAGTACGATAATCTAAGTGCTTACACTGTTCTGTTTGATAAGGA 560
Query 492 TGGTGATGCCTGTCTTTCTAGTTTCGGATTTGTGAAAGAGATCATCCGTTATAATCGAAG 551
||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||
Sbjct 561 TGGTGATGCCTGTCTTTCTAGTTTCGGCTTGGTGAAAGAGATCATCCGTTACAATCGAAG 620
Query 552 AGAAGGAGGAAACGTGAGCACTGGGAATGTGACATACAGATTTGGTAAC-ATCCTTTTGA 610
||||||||| |||||||| |||||||||||||||||||||||||||| | |||||| |||
Sbjct 621 AGAAGGAGGGAACGTGAGGACTGGGAATGTGACATACAGATTTGGTA-CTATCCTTGTGA 679
Query 611 ATCTGCTAACTGGAGTTG-AAATTCCTCCAAGCCATGCTCTTGAGATGATCAATGGAAAG 669
|||||||||||||| ||| ||||| |||| |||||||||| |||||||||||||||||||
Sbjct 680 ATCTGCTAACTGGA-TTGCAAATTTCTCCGAGCCATGCTCCTGAGATGATCAATGGAAAG 738
Query 670 GATGTTACTGAGCTGATGGATCCAAATCTGAAGGGAAAGTTCTCTACAGAAGAAGCTACT 729
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 739 GATGTCACTGAGCTCATGGATCCAAATCTGAAGGGAAAGTTCTCTACAGAAGAAGCTACT 798
Query 730 GTAGTTTTAAAACTCGCCTCTGAATGTTTGCAGTGGAAGGATTATATAGAGAATCGCATC 789
||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 799 ATAGTTTTAAAACTCGCCTCTGAATGTTTGCAGTGGAAGGGTTATATAGAGAATGGCATC 858
Query 790 ACTAAAGAGCTTGTTGCAACACTTGAAGCCTTGCAGGCTAAAAAAGAA 837
|||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 859 ACTAAAAAGCTTGTTGCAACACTTAAAGCCTTGCAGGCTAAAAAAGAA 906
> AT4G35230.1 | Symbols: BSK1 | BR-signaling kinase 1 | chr4:16755112-16758091
REVERSE LENGTH=1802
Length=1802
Score = 165 bits (89), Expect = 6e-40
Identities = 196/245 (80%), Gaps = 18/245 (7%)
Strand=Plus/Plus
Query 274 TTGATGGGATATTGTTGTGATGAAGATGA-AGGACTTCTTGTTGCAGAGTTCATGCCTAA 332
||||| |||||||||||||||| |||||| ||| ||||||||||| ||||||||||||||
Sbjct 453 TTGATTGGATATTGTTGTGATGGAGATGAGAGG-CTTCTTGTTGCTGAGTTCATGCCTAA 511
Query 333 TGATACTCTTGCTAAGCGTTTATTCCA--GG-AGAAG-A-ACA-TGGAATGGTCAATGAG 386
||||||||||||||||| ||| ||||| || | || | ||| | || ||| | |||||
Sbjct 512 TGATACTCTTGCTAAGCATTTGTTCCATTGGGAAAATCAGACAATTGAGTGGGCTATGAG 571
Query 387 GTTGCGAGT-GGCTTATCATATAGCTGAAGCATTGGATTATTGCAATAGTGTACGTTTTG 445
||||||||| || | || | |||||||| || ||||||||||| | || || | | | |
Sbjct 572 GTTGCGAGTAGGAT-ATTACATAGCTGAGGCTTTGGATTATTGTAGTACTG-AGGGTC-G 628
Query 446 ACGA--GTACCATAATCT-AAGTGCTTACACTGTTCTGTTTGATAAGGATGGTGATGCCT 502
| | ||||||| || | || |||||| | ||||| |||||| ||||||||||| |||
Sbjct 629 TCCATTGTACCATGATTTGAA-TGCTTATAGGGTTCTCTTTGATGAGGATGGTGAT-CCT 686
Query 503 -GTCT 506
||||
Sbjct 687 CGTCT 691
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40790127364
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5