BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg480599 Length=837 Score E Sequences producing significant alignments: (Bits) Value AT2G17170.1 | Symbols: | Protein kinase superfamily protein | ... 1238 0.0 AT4G35230.1 | Symbols: BSK1 | BR-signaling kinase 1 | chr4:1675... 165 6e-40 > AT2G17170.1 | Symbols: | Protein kinase superfamily protein | chr2:7474736-7476438 FORWARD LENGTH=987 Length=987 Score = 1238 bits (670), Expect = 0.0 Identities = 776/828 (94%), Gaps = 4/828 (0%) Strand=Plus/Plus Query 12 CAAGAACGACGGATTCGTCAACTGGCCTTTCATAGAGTTCTTCCTCTCCGATCTCACGAA 71 |||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||| | Sbjct 81 CAAGAACGACGGATTCGTCAACTGGCCTGTCACAGAGTTCTTCCTCTCCGATATCACCAC 140 Query 72 GGCGACCAAGAACTTCAGTACCGACGAGATCATATCAGAGAACGCAGAAGAATCCTCCAA 131 ||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||| Sbjct 141 GGCGACCAATAACTTCAGTTCCGACGAGATCATATCAGAGAACGCAGAAGAATCTTCCAA 200 Query 132 TTTTGTCTACAAGGGTCGTTTATCAGAGAATCTTGGTTTCGTCGCTGTCAAGAGATTCAA 191 | |||||||||| ||| |||||| |||||||||||| ||||| ||||||||||||||||| Sbjct 201 TGTTGTCTACAAAGGTTGTTTATTAGAGAATCTTGGCTTCGTAGCTGTCAAGAGATTCAA 260 Query 192 GAATACGCCTTGGCCTGATCATGAATACTTCACGGAAGACGCAAAAACAGCTGGAGAGCT 251 ||||||||||||| ||||| ||| ||||||||||||||||||||||||||||| ||||| Sbjct 261 GAATACGCCTTGGGATGATCCTGACTACTTCACGGAAGACGCAAAAACAGCTGGGGAGCT 320 Query 252 AAAACACAAGAGACTCGTCAAGTTGATGGGATATTGTTGTGATGAAGATGAAGGACTTCT 311 ||| ||||||||||| ||||||||| |||||||||| || || ||||||||||||||||| Sbjct 321 AAAGCACAAGAGACTTGTCAAGTTGTTGGGATATTGCTGCGAGGAAGATGAAGGACTTCT 380 Query 312 TGTTGCAGAGTTCATGCCTAATGATACTCTTGCTAAGCGTTTATTCCAGGAGAAGAACAT 371 |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 381 TGTTGCAGAGTTTATGCCAAATGATACTCTTGCTAAGCGTTTATTCCAGGAGAAGAACAT 440 Query 372 GGAATGGTCAATGAGGTTGCGAGTGGCTTATCATATAGCTGAAGCATTGGATTATTGCAA 431 ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| Sbjct 441 GGAATGGTCAATGAGGTTGCGAGTGGCGTATCATATAGTTGAAGCATTGGATTATTGCAA 500 Query 432 TAGTGTACGTTTTGACGAGTACCATAATCTAAGTGCTTACACTGTTCTGTTTGATAAGGA 491 | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 501 TTCTGTACGTTTTGACGAGTACGATAATCTAAGTGCTTACACTGTTCTGTTTGATAAGGA 560 Query 492 TGGTGATGCCTGTCTTTCTAGTTTCGGATTTGTGAAAGAGATCATCCGTTATAATCGAAG 551 ||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||| Sbjct 561 TGGTGATGCCTGTCTTTCTAGTTTCGGCTTGGTGAAAGAGATCATCCGTTACAATCGAAG 620 Query 552 AGAAGGAGGAAACGTGAGCACTGGGAATGTGACATACAGATTTGGTAAC-ATCCTTTTGA 610 ||||||||| |||||||| |||||||||||||||||||||||||||| | |||||| ||| Sbjct 621 AGAAGGAGGGAACGTGAGGACTGGGAATGTGACATACAGATTTGGTA-CTATCCTTGTGA 679 Query 611 ATCTGCTAACTGGAGTTG-AAATTCCTCCAAGCCATGCTCTTGAGATGATCAATGGAAAG 669 |||||||||||||| ||| ||||| |||| |||||||||| ||||||||||||||||||| Sbjct 680 ATCTGCTAACTGGA-TTGCAAATTTCTCCGAGCCATGCTCCTGAGATGATCAATGGAAAG 738 Query 670 GATGTTACTGAGCTGATGGATCCAAATCTGAAGGGAAAGTTCTCTACAGAAGAAGCTACT 729 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 739 GATGTCACTGAGCTCATGGATCCAAATCTGAAGGGAAAGTTCTCTACAGAAGAAGCTACT 798 Query 730 GTAGTTTTAAAACTCGCCTCTGAATGTTTGCAGTGGAAGGATTATATAGAGAATCGCATC 789 ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct 799 ATAGTTTTAAAACTCGCCTCTGAATGTTTGCAGTGGAAGGGTTATATAGAGAATGGCATC 858 Query 790 ACTAAAGAGCTTGTTGCAACACTTGAAGCCTTGCAGGCTAAAAAAGAA 837 |||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct 859 ACTAAAAAGCTTGTTGCAACACTTAAAGCCTTGCAGGCTAAAAAAGAA 906 > AT4G35230.1 | Symbols: BSK1 | BR-signaling kinase 1 | chr4:16755112-16758091 REVERSE LENGTH=1802 Length=1802 Score = 165 bits (89), Expect = 6e-40 Identities = 196/245 (80%), Gaps = 18/245 (7%) Strand=Plus/Plus Query 274 TTGATGGGATATTGTTGTGATGAAGATGA-AGGACTTCTTGTTGCAGAGTTCATGCCTAA 332 ||||| |||||||||||||||| |||||| ||| ||||||||||| |||||||||||||| Sbjct 453 TTGATTGGATATTGTTGTGATGGAGATGAGAGG-CTTCTTGTTGCTGAGTTCATGCCTAA 511 Query 333 TGATACTCTTGCTAAGCGTTTATTCCA--GG-AGAAG-A-ACA-TGGAATGGTCAATGAG 386 ||||||||||||||||| ||| ||||| || | || | ||| | || ||| | ||||| Sbjct 512 TGATACTCTTGCTAAGCATTTGTTCCATTGGGAAAATCAGACAATTGAGTGGGCTATGAG 571 Query 387 GTTGCGAGT-GGCTTATCATATAGCTGAAGCATTGGATTATTGCAATAGTGTACGTTTTG 445 ||||||||| || | || | |||||||| || ||||||||||| | || || | | | | Sbjct 572 GTTGCGAGTAGGAT-ATTACATAGCTGAGGCTTTGGATTATTGTAGTACTG-AGGGTC-G 628 Query 446 ACGA--GTACCATAATCT-AAGTGCTTACACTGTTCTGTTTGATAAGGATGGTGATGCCT 502 | | ||||||| || | || |||||| | ||||| |||||| ||||||||||| ||| Sbjct 629 TCCATTGTACCATGATTTGAA-TGCTTATAGGGTTCTCTTTGATGAGGATGGTGAT-CCT 686 Query 503 -GTCT 506 |||| Sbjct 687 CGTCT 691 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40790127364 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5